Query         gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 448
No_of_seqs    148 out of 5530
Neff          8.2 
Searched_HMMs 39220
Date          Sun May 29 22:59:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780544.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01455 glmM phosphoglucosam 100.0       0       0  819.3  31.7  440    6-445     1-450 (450)
  2 cd05802 GlmM GlmM is a bacteri 100.0       0       0  778.9  35.2  433    5-440     1-434 (434)
  3 PRK10887 glmM phosphoglucosami 100.0       0       0  773.0  35.5  441    2-446     3-445 (445)
  4 cd05805 MPG1_transferase GTP-m 100.0       0       0  735.8  33.1  428    5-443     1-441 (441)
  5 cd05803 PGM_like4 This PGM-lik 100.0       0       0  735.4  33.2  429    5-439     1-444 (445)
  6 cd05800 PGM_like2 This PGM-lik 100.0       0       0  732.9  34.9  430    6-442     3-460 (461)
  7 cd03087 PGM_like1 This archaea 100.0       0       0  724.7  32.2  424    5-443     1-439 (439)
  8 cd03089 PMM_PGM The phosphoman 100.0       0       0  717.8  34.8  425    5-443     1-443 (443)
  9 COG1109 {ManB} Phosphomannomut 100.0       0       0  711.5  35.2  441    2-447     6-461 (464)
 10 PRK09542 manB phosphomannomuta 100.0       0       0  702.0  31.9  428    6-444     1-443 (445)
 11 cd05799 PGM2 This CD includes  100.0       0       0  696.8  30.9  438    6-443     4-486 (487)
 12 cd05801 PGM_like3 This bacteri 100.0       0       0  690.2  30.2  439    3-443    19-522 (522)
 13 PRK07564 phosphoglucomutase; V 100.0       0       0  656.3  32.6  436    5-446    41-541 (544)
 14 cd03088 ManB ManB is a bacteri 100.0       0       0  643.2  32.0  416    6-438     2-457 (459)
 15 PTZ00150 phosphoglucomutase; P 100.0       0       0  612.0  30.3  439    3-443    47-578 (593)
 16 cd03084 phosphohexomutase The  100.0       0       0  617.0  24.3  351    5-443     1-355 (355)
 17 cd03085 PGM1 Phosphoglucomutas 100.0       0       0  608.3  30.8  423    5-430    12-512 (548)
 18 TIGR01132 pgm phosphoglucomuta 100.0       0       0  538.8  21.3  445    2-446    38-551 (553)
 19 KOG1220 consensus              100.0       0       0  508.6  23.9  426    1-426    56-568 (607)
 20 cd03086 PGM3 PGM3 (phosphogluc 100.0       0       0  459.2  22.6  349   94-443    36-513 (513)
 21 COG0033 Pgm Phosphoglucomutase 100.0       0       0  447.4  21.0  440    3-447    15-520 (524)
 22 KOG0625 consensus              100.0       0       0  370.5  26.9  419    6-426    18-516 (558)
 23 PTZ00302 N-acetylglucosamine-p 100.0       0       0  374.3  20.5  271  176-446   246-600 (604)
 24 pfam02878 PGM_PMM_I Phosphoglu 100.0 2.1E-42       0  281.2  15.9  137    3-139     1-137 (138)
 25 KOG2537 consensus              100.0 1.9E-37 4.8E-42  250.6  20.3  353   40-446   122-538 (539)
 26 pfam02880 PGM_PMM_III Phosphog  99.9 7.4E-25 1.9E-29  172.8   5.9  110  260-372     1-110 (111)
 27 pfam02879 PGM_PMM_II Phosphogl  99.8 7.5E-22 1.9E-26  154.3   4.9   99  158-256     1-103 (103)
 28 cd03086 PGM3 PGM3 (phosphogluc  99.2 2.6E-11 6.7E-16   89.2   5.6   62   42-104   102-163 (513)
 29 PTZ00302 N-acetylglucosamine-p  99.2 2.9E-11 7.5E-16   88.9   4.4   44   92-135    72-115 (604)
 30 pfam00408 PGM_PMM_IV Phosphogl  99.0 2.1E-09 5.4E-14   77.4   8.0   59  386-444    12-71  (71)
 31 KOG2537 consensus               97.9 7.2E-06 1.8E-10   55.6   3.1   40   90-129    56-95  (539)
 32 COG0426 FpaA Uncharacterized f  93.7    0.51 1.3E-05   25.6   8.5   19  106-124    34-52  (388)
 33 PRK12615 galactose-6-phosphate  93.2    0.24 6.2E-06   27.6   5.4   57   44-102     2-67  (171)
 34 PRK08622 galactose-6-phosphate  92.6    0.74 1.9E-05   24.6   7.3   57   44-102     2-67  (171)
 35 PRK12613 galactose-6-phosphate  87.7       2   5E-05   22.0   5.9   57   44-102     2-64  (141)
 36 cd02071 MM_CoA_mut_B12_BD meth  87.7     1.7 4.2E-05   22.5   5.5   52   46-101     6-58  (122)
 37 TIGR01501 MthylAspMutase methy  87.6     1.3 3.4E-05   23.0   5.0   55   43-101     2-60  (134)
 38 PRK09426 methylmalonyl-CoA mut  87.1     2.2 5.6E-05   21.7   7.9   22  357-378   525-547 (715)
 39 pfam02502 LacAB_rpiB Ribose/Ga  86.4     2.4 6.1E-05   21.5   7.6   57   44-102     1-66  (140)
 40 cd02067 B12-binding B12 bindin  86.1     2.5 6.3E-05   21.4   8.0   52   47-102     7-59  (119)
 41 PRK05571 ribose-5-phosphate is  82.6     3.5   9E-05   20.4   7.5   57   44-102     2-68  (149)
 42 TIGR02707 butyr_kinase butyrat  81.9     3.6 9.3E-05   20.4   5.1   75  291-370   159-241 (353)
 43 cd02070 corrinoid_protein_B12-  81.0       4  0.0001   20.1  10.5   60   42-102    82-142 (201)
 44 TIGR00689 rpiB_lacA_lacB sugar  79.5     4.5 0.00012   19.8   4.9   57   45-103     1-67  (146)
 45 KOG0061 consensus               79.0     4.7 0.00012   19.7   5.7   79   20-109   201-279 (613)
 46 cd02069 methionine_synthase_B1  78.9     4.7 0.00012   19.7   7.9   56   42-101    88-147 (213)
 47 PTZ00215 ribose 5-phosphate is  78.4     4.9 0.00012   19.6   7.2   58   43-102     3-71  (156)
 48 COG2185 Sbm Methylmalonyl-CoA   76.4     5.6 0.00014   19.2   6.8   57   40-100    10-70  (143)
 49 PRK05569 flavodoxin; Provision  76.2     5.6 0.00014   19.2   5.2   40   43-82      2-42  (141)
 50 PRK00148 Maf-like protein; Rev  75.9     4.9 0.00012   19.6   4.2  167  186-365     7-193 (195)
 51 COG5012 Predicted cobalamin bi  75.5     5.9 0.00015   19.1   7.0   52   43-94    105-157 (227)
 52 TIGR02370 pyl_corrinoid methyl  75.4     3.1   8E-05   20.8   3.1   52   47-102    94-146 (201)
 53 COG1732 OpuBC Periplasmic glyc  74.9     6.1 0.00016   19.0  11.2  208   40-276    30-256 (300)
 54 PRK09414 glutamate dehydrogena  74.8     6.1 0.00016   19.0   5.3  149   19-209    97-261 (446)
 55 TIGR01120 rpiB ribose 5-phosph  73.7     4.2 0.00011   20.0   3.4   57   44-102     1-66  (143)
 56 COG0698 RpiB Ribose 5-phosphat  72.7     6.9 0.00018   18.6   6.2   57   44-102     2-68  (151)
 57 PRK03692 putative UDP-N-acetyl  66.9     9.2 0.00023   17.9   8.7  127   51-202    89-216 (246)
 58 PRK05568 flavodoxin; Provision  65.4     9.8 0.00025   17.7   6.9   40   43-82      2-42  (142)
 59 PRK08621 galactose-6-phosphate  65.1      10 0.00025   17.7   7.2   57   44-102     2-65  (142)
 60 pfam04069 OpuAC Substrate bind  64.8      10 0.00026   17.6   8.7   51   43-93      1-51  (256)
 61 TIGR01163 rpe ribulose-phospha  61.1     5.4 0.00014   19.3   1.9   39  196-244    77-115 (216)
 62 TIGR00863 P2X cation transport  61.0     7.2 0.00018   18.6   2.5   13   40-52     16-28  (377)
 63 cd02072 Glm_B12_BD B12 binding  60.7      12 0.00031   17.2   7.4   51   47-101     7-58  (128)
 64 PRK02261 methylaspartate mutas  56.5      14 0.00036   16.7   7.8   56   42-101     3-62  (137)
 65 PRK05452 anaerobic nitric oxid  56.1      14 0.00037   16.7   9.2  133   72-209   128-291 (479)
 66 cd05313 NAD_bind_2_Glu_DH NAD(  54.2      15 0.00039   16.5   5.4   29  176-204   146-174 (254)
 67 pfam03141 DUF248 Putative meth  53.0      16 0.00041   16.4   3.3   33  157-189    98-130 (506)
 68 COG2081 Predicted flavoprotein  52.7      16 0.00042   16.3   3.6   96  247-353   142-252 (408)
 69 TIGR01361 DAHP_synth_Bsub phos  52.6     4.8 0.00012   19.6   0.5   38   40-77     22-59  (262)
 70 TIGR00959 ffh signal recogniti  52.1      17 0.00042   16.3   7.4   88   32-134   122-217 (439)
 71 PRK10834 hypothetical protein;  52.1      17 0.00042   16.3   7.6   96    5-105    50-151 (239)
 72 PRK02676 consensus              51.7      17 0.00043   16.3   3.2   27  186-212     8-34  (196)
 73 TIGR03335 F390_ftsA coenzyme F  51.4      17 0.00043   16.2  10.8   50   43-93    100-157 (445)
 74 PRK03525 crotonobetainyl-CoA:c  50.4     7.1 0.00018   18.6   1.0   26   69-94     13-39  (405)
 75 PRK04338 N(2),N(2)-dimethylgua  49.6      18 0.00046   16.0   7.6   80    6-102    59-154 (376)
 76 pfam06574 FAD_syn FAD syntheta  48.9      19 0.00048   16.0   3.5   30  179-208   113-146 (158)
 77 PRK11466 hybrid sensory histid  48.6      19 0.00048   15.9   5.6   89   44-135   511-618 (912)
 78 COG1867 TRM1 N2,N2-dimethylgua  45.8      21 0.00053   15.7   5.5   82    6-102    60-155 (380)
 79 PRK03098 consensus              42.4      24  0.0006   15.4   3.1   27  187-213     4-30  (185)
 80 PRK02289 4-oxalocrotonate taut  41.5      24 0.00062   15.3   4.4   27  418-444     2-29  (60)
 81 PRK05627 bifunctional riboflav  39.3      26 0.00067   15.1   3.6   34  175-208   114-151 (303)
 82 PRK05788 cobalamin biosynthesi  38.6      23 0.00059   15.4   2.2   12  293-304   136-147 (338)
 83 cd01534 4RHOD_Repeat_3 Member   38.5      12 0.00032   17.1   0.8   43  164-206    44-86  (95)
 84 TIGR00222 panB 3-methyl-2-oxob  38.4      18 0.00045   16.1   1.5   47   45-100    19-83  (267)
 85 TIGR00700 GABAtrnsam 4-aminobu  38.3      14 0.00036   16.8   1.0   97  247-367   187-285 (427)
 86 COG0196 RibF FAD synthase [Coe  38.1      27  0.0007   14.9   2.8   46  158-207   104-152 (304)
 87 PRK13055 putative lipid kinase  38.0      23  0.0006   15.4   2.1   33  334-372   210-242 (334)
 88 pfam01474 DAHP_synth_2 Class-I  38.0      28  0.0007   14.9   4.5   30   20-52     38-67  (437)
 89 COG1004 Ugd Predicted UDP-gluc  37.8      28 0.00071   14.9   4.9   15  293-307   223-237 (414)
 90 KOG2451 consensus               37.7      28 0.00071   14.9   3.6   35   53-88    171-205 (503)
 91 PRK06696 uridine kinase; Valid  37.6      28 0.00071   14.9   6.7   51   22-76      8-60  (227)
 92 pfam02706 Wzz Chain length det  37.6      28 0.00071   14.9   4.1   35  407-441   104-138 (139)
 93 pfam08886 GshA Glutamate-cyste  36.3      29 0.00075   14.8   9.6  275   19-334    53-341 (404)
 94 PRK08114 cystathionine beta-ly  34.9      12 0.00031   17.1   0.3   37   43-79     52-88  (395)
 95 TIGR01368 CPSaseIIsmall carbam  34.7      31 0.00079   14.6   6.6  224   32-305    72-323 (383)
 96 TIGR00512 aIF-2BI_fam translat  34.6      31  0.0008   14.6   3.5   23  246-271   208-232 (306)
 97 TIGR01702 CO_DH_cata carbon-mo  32.9      33 0.00085   14.4   5.6   76   45-128   295-381 (647)
 98 TIGR01137 cysta_beta cystathio  32.8      30 0.00077   14.7   2.0   53   27-88     77-132 (527)
 99 PRK00238 consensus              32.6      34 0.00086   14.4   4.2   27  186-212     7-33  (198)
100 TIGR01780 SSADH succinic semia  30.7      36 0.00092   14.2   3.4   62   52-114   129-196 (454)
101 TIGR01879 hydantase amidase, h  30.6      16 0.00042   16.3   0.3   57   56-118    31-90  (406)
102 TIGR02408 ectoine_ThpD ectoine  30.0      25 0.00064   15.2   1.2   44  179-226   221-270 (278)
103 TIGR02877 spore_yhbH sporulati  29.7      37 0.00094   14.2   2.0   28  331-358   308-335 (392)
104 PRK08185 hypothetical protein;  29.6      38 0.00097   14.1   9.2   87   14-109    17-107 (283)
105 TIGR02546 III_secr_ATP type II  29.2      38 0.00098   14.0   5.1   24  229-260   172-195 (430)
106 COG2085 Predicted dinucleotide  28.9      39 0.00099   14.0   8.5  159   27-208    11-180 (211)
107 PRK11679 lipoprotein; Provisio  28.9      25 0.00065   15.1   1.1   37  408-444   304-343 (345)
108 PRK07580 Mg-protoporphyrin IX   28.8      38 0.00096   14.1   1.9   50  157-209    45-94  (230)
109 TIGR01330 bisphos_HAL2 3'(2'),  28.3      40   0.001   13.9   3.4   78  210-300   109-192 (382)
110 cd06395 PB1_Map2k5 PB1 domain   27.9      30 0.00076   14.7   1.3   26  242-274    47-72  (91)
111 cd05566 PTS_IIB_galactitol PTS  27.6      41   0.001   13.9   6.7   66   43-114     1-67  (89)
112 COG0124 HisS Histidyl-tRNA syn  27.5       5 0.00013   19.5  -2.7   59   77-135    81-153 (429)
113 PRK02102 ornithine carbamoyltr  25.8      44  0.0011   13.7   6.9  191   15-244    11-218 (331)
114 PRK00979 tetrahydromethanopter  25.6      45  0.0011   13.6   3.9   88  153-254    80-171 (310)
115 TIGR00381 cdhD CO dehydrogenas  25.5      38 0.00098   14.1   1.5   76  189-264   146-222 (401)
116 PRK05134 3-demethylubiquinone-  25.4      45  0.0011   13.6   4.3   61  143-209    19-79  (233)
117 pfam06804 Lipoprotein_18 NlpB/  25.2      30 0.00076   14.7   0.9   91  179-269   202-296 (303)
118 TIGR02401 trehalose_TreY malto  24.8      46  0.0012   13.5   2.2   36  406-441   402-439 (971)
119 PRK11921 metallo-beta-lactamas  24.7      46  0.0012   13.5   9.4   21  427-447   374-394 (395)
120 TIGR02128 G6PI_arch bifunction  24.3      47  0.0012   13.5   2.5   99  178-311    29-129 (338)
121 TIGR01122 ilvE_I branched-chai  24.2      47  0.0012   13.5   2.2   85  209-311   144-238 (302)
122 COG0424 Maf Nucleotide-binding  24.0      48  0.0012   13.5   3.8  119  186-317     8-134 (193)
123 cd02064 Flavokinase_C Riboflav  23.8      48  0.0012   13.4   4.0   27  181-207   106-136 (179)
124 PRK07952 DNA replication prote  23.7      48  0.0012   13.4   7.0   32   44-75     98-129 (242)
125 TIGR02075 pyrH_bact uridylate   23.6      37 0.00094   14.1   1.1   68   11-88     13-84  (236)
126 PRK13233 nifH nitrogenase redu  23.5      49  0.0012   13.4   1.8   43    1-56      1-46  (275)
127 pfam03900 Porphobil_deamC Porp  23.5      46  0.0012   13.5   1.6   37  239-275    37-73  (74)
128 PRK01215 competence damage-ind  22.9      50  0.0013   13.3   8.8   56  390-446   192-252 (264)
129 TIGR01328 met_gam_lyase methio  22.9      41   0.001   13.9   1.2   19  314-332   298-316 (392)
130 TIGR03577 EF_0830 conserved hy  22.6      51  0.0013   13.3   2.4   22  225-246    36-57  (115)
131 pfam03808 Glyco_tran_WecB Glyc  22.4      51  0.0013   13.3   7.2  128   51-202    29-157 (172)
132 pfam01116 F_bP_aldolase Fructo  22.2      52  0.0013   13.2   6.9   86   15-109    21-111 (283)
133 cd06533 Glyco_transf_WecG_TagA  21.6      53  0.0014   13.2   5.5   56   50-106    26-82  (171)
134 PRK03442 consensus              21.4      54  0.0014   13.1   3.6   42  324-365   163-206 (213)
135 TIGR03576 pyridox_MJ0158 pyrid  21.2      27 0.00068   15.0  -0.0   21    9-29     27-47  (346)
136 PTZ00079 NADP-specific glutama  21.0      55  0.0014   13.1  11.6   16  120-135    20-35  (469)
137 pfam00864 P2X_receptor ATP P2X  20.7      56  0.0014   13.0   2.2   15   41-55      4-18  (374)
138 TIGR01850 argC N-acetyl-gamma-  20.4      51  0.0013   13.3   1.3   19   58-76     86-104 (361)
139 PRK12681 cysB transcriptional   20.2      57  0.0015   13.0   4.2  196   79-325    28-240 (324)
140 pfam03668 ATP_bind_2 P-loop AT  20.2      57  0.0015   13.0   2.2   65   20-88     32-101 (284)
141 COG3317 NlpB Uncharacterized l  20.1      57  0.0015   13.0   2.1   15  428-442   326-340 (342)
142 COG1817 Uncharacterized protei  20.0      51  0.0013   13.3   1.2   35  290-324   260-295 (346)
143 PRK06702 O-acetylhomoserine am  20.0      53  0.0014   13.2   1.3   35   43-79     51-87  (432)

No 1  
>TIGR01455 glmM phosphoglucosamine mutase; InterPro: IPR006352   This family describes GlmM, phosphoglucosamine mutase, also designated MrsA and YhbF in Escherichia coli , UreC in Helicobacter pylori , and femR315 or FemD in Staphlococcus aureus . It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides..
Probab=100.00  E-value=0  Score=819.25  Aligned_cols=440  Identities=53%  Similarity=0.903  Sum_probs=423.0

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             3358601550687788999999999999999723799---8389996687797999999999999789879996267808
Q gi|254780544|r    6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKH---RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSP   82 (448)
Q Consensus         6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~---~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP   82 (448)
                      |||+||||.+|..+|||++|.+||.|.|.+|+++...   ++||||+|||.||.||..|++.||.|.|++|+.+|++|||
T Consensus         1 FGTDGvRG~An~~~lTae~al~LG~AaG~VL~~~~~~~~~~~VviGkDTR~SG~MlE~Al~AGL~s~G~~v~~lG~~PTP   80 (450)
T TIGR01455         1 FGTDGVRGRANQEPLTAELALKLGAAAGRVLRRRGSRKSAPRVVIGKDTRLSGYMLENALVAGLTSAGVDVLLLGPLPTP   80 (450)
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf             99874031108876788999999899999974068889885689833788658899999998674078416885577861


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             9999998719925898865477752012564036545678357899999961566---4334454332221113542566
Q gi|254780544|r   83 AVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDL---TSYLSCYDSIGHAKRVDGVHDR  159 (448)
Q Consensus        83 ~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  159 (448)
                      .++|.++++.|++||||+|||||++|||||||+++|.+++.+.|.+||..+++..   +-.......+|+..+.++..++
T Consensus        81 aVAyLT~~~~AdaGvmISASHNP~~DNGIKfFg~~G~KL~D~~E~~IEa~l~~~~r~~~~~~~~~~~lG~~~~~~da~~r  160 (450)
T TIGR01455        81 AVAYLTRTLRADAGVMISASHNPYEDNGIKFFGPEGFKLDDETEAAIEALLDEAAREDTLLLVESEGLGRVKRVPDAVGR  160 (450)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHH
T ss_conf             68887664077333686046774877774441767987988999999876314321677788561246101166416899


Q ss_pred             HHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf             68877632631021189669998446654333322212333222222232223557744221013777642002343036
Q gi|254780544|r  160 YIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIG  239 (448)
Q Consensus       160 Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~G  239 (448)
                      |++++++.++....+++||||+||+||+++.++|++|++||++|+.+|++|||.++|.+|+++++..|++.|++++||+|
T Consensus       161 Y~~F~~~t~P~~~~L~GLk~VlDCAnGAay~~AP~~F~~LGAeViAi~~~PdG~NIN~~cGSTH~~~Lq~~V~E~~AdLG  240 (450)
T TIGR01455       161 YIEFLKSTLPRGLSLSGLKVVLDCANGAAYKVAPKVFRELGAEVIAIGVEPDGLNINDGCGSTHLEALQKAVRESGADLG  240 (450)
T ss_pred             HHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             99999984689988787568764104236899999999719869998068886322445686777889988402034401


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             75315521000133223755331135677776553200223433322113600444320012111112332110111110
Q gi|254780544|r  240 IALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMK  319 (448)
Q Consensus       240 ia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~  319 (448)
                      |||||||||+.+||++|++++||+++.|+|+++.++...+++.||.|+.||-.+++..++.|++++||+||++|+.+.|.
T Consensus       241 iAfDGDaDR~~~VD~~G~~VDGD~Il~~~A~~~~~~g~L~~N~vV~TvMsNlGle~~L~~~G~~~~rtaVGDRYV~e~l~  320 (450)
T TIGR01455       241 IAFDGDADRVLAVDENGDIVDGDQILYIIARALKESGELAGNTVVATVMSNLGLEKALEKLGIQLIRTAVGDRYVLEELR  320 (450)
T ss_pred             EEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf             00128845289880665954756899999999996057888856067888699999998479828983776878999998


Q ss_pred             CCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCC---C-CCCCHHHHHHH
Q ss_conf             2897001346623653010001444233202466777558888999986564230000000567---6-51155899999
Q gi|254780544|r  320 NNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKD---T-SILNSSSIVQA  395 (448)
Q Consensus       320 ~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~---~-~~~~~~~i~~~  395 (448)
                      +.++.+|||.|||++|.++.+++||++++|++|++|.+++++||+|.+.+..|||...||++.+   + .+.+...+.+.
T Consensus       321 ~~G~~LGGEQSGH~i~~D~~tTGDGivsALqvl~~m~~~G~~LSeL~~~~~~~PQ~L~NVrv~~r~~k~~~~e~P~v~~A  400 (450)
T TIGR01455       321 EKGLNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKKSGSSLSELASELTKYPQVLVNVRVEDRVGKEAAAEAPAVKAA  400 (450)
T ss_pred             HCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             76975520136615550568860799999999999986289789995187427820788887265024740123489999


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf             87655430788659996779822799996159989999999999999875
Q gi|254780544|r  396 IADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPM  445 (448)
Q Consensus       396 ~~~~~~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~  445 (448)
                      +.+.+.++.+.+|++||||||||+|||++|+.|++.++.+.+.+.+.|+.
T Consensus       401 ~~~a~~~lg~~GRillRpSGTEPliRVMVEa~d~~~v~~~~~~~a~vV~~  450 (450)
T TIGR01455       401 IEDAEAELGGKGRILLRPSGTEPLIRVMVEAADEELVQQLADAIADVVSE  450 (450)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             99999984379808970789978316886448879999999999998439


No 2  
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope.  In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate.  Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00  E-value=0  Score=778.94  Aligned_cols=433  Identities=54%  Similarity=0.896  Sum_probs=403.7

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV   84 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l   84 (448)
                      ||||+||||++|. +|||+++.++|+|+|++++.....++|+||||+|.+|++|++++++||+++|++|+++|.+|||++
T Consensus         1 lFGT~GiRG~~~~-~lt~~~~~~ig~a~~~~~~~~~~~~~Vvvg~D~R~~s~~~~~~~~~gl~s~G~~V~~~g~~pTP~~   79 (434)
T cd05802           1 LFGTDGIRGVANE-PLTPELALKLGRAAGKVLGKGGGRPKVLIGKDTRISGYMLESALAAGLTSAGVDVLLLGVIPTPAV   79 (434)
T ss_pred             CCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf             9899971003699-999999999999999999846999869999799988799999999999986996999188885999


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r   85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV  164 (448)
Q Consensus        85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l  164 (448)
                      +|++++++++|||||||||||++||||||++++|.+++++.+++||+++........ ....++......++.+.|++++
T Consensus        80 ~~~v~~~~~~~Gi~ITASHNP~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~-~~~~~~~~~~~~d~~~~Y~~~l  158 (434)
T cd05802          80 AYLTRKLRADAGVVISASHNPFEDNGIKFFSSDGYKLPDEVEEEIEALIDKELELPP-TGEKIGRVYRIDDARGRYIEFL  158 (434)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCEEECCCHHHHHHHHH
T ss_conf             999996499813896368897402848963467875798999999999837876568-6013761688500699999999


Q ss_pred             HHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             63263102118966999844665433332221233322222223222355774422101377764200234303675315
Q gi|254780544|r  165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDG  244 (448)
Q Consensus       165 ~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~Dg  244 (448)
                      ++.++.+. .+++||++||+||+++.+++++|++|||+++.+|++||+.++|++|++.+++.|++.|++.++|+|++|||
T Consensus       159 ~~~~~~~~-~~~lkvvvD~~~Ga~~~~~~~il~~lG~~v~~~~~~pdg~~~n~~~~~~~p~~l~~~v~~~~aDlgia~Dg  237 (434)
T cd05802         159 KSTFPKDL-LSGLKIVLDCANGAAYKVAPEVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQKAVLENGADLGIAFDG  237 (434)
T ss_pred             HHHCCHHH-HCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf             87588144-15988999899861245699999872984477425788776789989899799999998559967888869


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCE
Q ss_conf             52100013322375533113567777655320022343332211360044432001211111233211011111028970
Q gi|254780544|r  245 DGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFN  324 (448)
Q Consensus       245 D~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~  324 (448)
                      ||||+++||++|++++||++++|++.++++++..++..||.++.||..++++++++|+++++||||||||.++|++.++.
T Consensus       238 D~DR~~~vd~~G~~i~~d~l~~l~a~~~l~~~~~~~~~vv~tv~ss~~l~~~~~~~g~~~~~t~vG~k~i~~~m~~~~~~  317 (434)
T cd05802         238 DADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGNTVVGTVMSNLGLEKALKELGIKLVRTKVGDRYVLEEMLKHGAN  317 (434)
T ss_pred             CCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCE
T ss_conf             98769999899978588999999999999850468987999734427899999976998999437249999999966977


Q ss_pred             ECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCC-CHHHHHHHHHHHHHHC
Q ss_conf             013466236530100014442332024667775588889999865642300000005676511-5589999987655430
Q gi|254780544|r  325 VGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSIL-NSSSIVQAIADAESEL  403 (448)
Q Consensus       325 ~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~  403 (448)
                      ||||+|||++|++|.+++||++++++++++|+.+++++++|++++|.||+...+++++++... ....+.+.+.+.+..+
T Consensus       318 ~ggE~sG~~~f~~~~~~~Dgi~aal~ile~l~~~~~~ls~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (434)
T cd05802         318 LGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKRSGKSLSELASDMKLYPQVLVNVRVKDKKALLENPRVQAAIAEAEKEL  397 (434)
T ss_pred             EEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             97415475774588868989999999999999839999999987544102014604376421120288999999999861


Q ss_pred             CCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             7886599967798227999961599899999999999
Q gi|254780544|r  404 RGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLA  440 (448)
Q Consensus       404 ~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~  440 (448)
                      ++.+|++||||||||++|||+||+|++.+++|+++++
T Consensus       398 ~d~~wvlvRpSgTEP~lriy~Ea~~~~~~~~L~~~ia  434 (434)
T cd05802         398 GGEGRVLVRPSGTEPLIRVMVEGEDEELVEKLAEELA  434 (434)
T ss_pred             CCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHC
T ss_conf             7977999981598416899997699999999999759


No 3  
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00  E-value=0  Score=772.99  Aligned_cols=441  Identities=47%  Similarity=0.825  Sum_probs=400.5

Q ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             65203358601550687788999999999999999723799838999668779799999999999978987999626780
Q gi|254780544|r    2 KRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPS   81 (448)
Q Consensus         2 ~r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~pt   81 (448)
                      ||++|||+||||+++..+|||+++.++|.|+|++++.+ ..++|+||||+|.+|++|++++++||+++|++|+++|.+||
T Consensus         3 ~~~~FGT~GiRG~ig~~~~t~e~~~~~g~A~~~~l~~~-~~~~VvVg~D~R~ss~~~~~a~~~gL~s~G~~V~~~g~~pT   81 (445)
T PRK10887          3 NRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARH-GSRKIIIGKDTRISGYMLESALEAGLAAAGLSALFTGPMPT   81 (445)
T ss_pred             CCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCH
T ss_conf             66775788810575898989999999999999999876-99969999589988899999999999977990998787887


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             89999998719925898865477752012564036545678357899999961566433445433222111354256668
Q gi|254780544|r   82 PAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYI  161 (448)
Q Consensus        82 P~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi  161 (448)
                      |+++|+++.+++++||||||||||++||||||++++|.+++++.++.|+..+++.... . .....+......+..+.|+
T Consensus        82 P~~~~a~~~~~~~~GImITASHNP~~~NGiK~~~~~G~~~~~~~~~~ie~~~~~~~~~-~-~~~~~~~~~~~~d~~~~yi  159 (445)
T PRK10887         82 PAVAYLTRTFRAEAGIVISASHNPFYDNGIKFFSIDGTKLPDDVEEAIEAEMEKEITC-V-DSAELGKASRIVDAAGRYI  159 (445)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCHHHCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC-C-CHHHCCCCEEECCHHHHHH
T ss_conf             9999999845998589999578961317757744889738688999999987166666-7-6221475101065499999


Q ss_pred             HHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf             87763263102118966999844665433332221233322222223222355774422101377764200234303675
Q gi|254780544|r  162 EHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIA  241 (448)
Q Consensus       162 ~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia  241 (448)
                      ++++..++..+..+++||++||+||+++.+++++|++|||+++.+|++|||.+++++|.++++..|++.|++.++|+|++
T Consensus       160 ~~~~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~lg~~v~~i~~~pdg~~~~~~~~~~~l~~l~~~v~~~~aDlGia  239 (445)
T PRK10887        160 EFCKGTFPNELSLNELKIVVDCANGATYHIAPNVLRELGATVIAIGCEPNGVNINEEVGATDVRALQARVLAEKADLGIA  239 (445)
T ss_pred             HHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             99987464311457998999899887999999999986990999614668888898988758899999998406777999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             31552100013322375533113567777655320022343332211360044432001211111233211011111028
Q gi|254780544|r  242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNN  321 (448)
Q Consensus       242 ~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~  321 (448)
                      |||||||++++|++|+++++|++++|++++++++...++ .||.++.||..++++++++|++++||||||+||+++|++.
T Consensus       240 ~DgDaDR~~~vDe~G~~i~~d~il~lla~~~l~~~~~~~-~vV~~~~ss~~~~~~~~~~G~~~~~t~vG~~~I~~~m~e~  318 (445)
T PRK10887        240 FDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQLRG-GAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEK  318 (445)
T ss_pred             ECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCCC-CEEEEECCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHH
T ss_conf             869987589997999788878999999999998489988-5787522651799999966991577784549999999972


Q ss_pred             CCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCC--CCHHHHHHHHHHH
Q ss_conf             97001346623653010001444233202466777558888999986564230000000567651--1558999998765
Q gi|254780544|r  322 GFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSI--LNSSSIVQAIADA  399 (448)
Q Consensus       322 ~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~  399 (448)
                      ++++|||+|||++|++|.+++||+++++++|++++++++++++|.+.++.+|++..++++.....  .....+.+...+.
T Consensus       319 ~a~~GgE~SG~~~~~~~~~~~Dgi~a~l~ile~l~~~~~~l~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~  398 (445)
T PRK10887        319 GWRIGAENSGHVILLDKTTTGDGIVAGLQVLAAMVRNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVKAVTAEV  398 (445)
T ss_pred             CCEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             98899768698614345889989999999999999749999999864131162130211035656502218999999999


Q ss_pred             HHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             54307886599967798227999961599899999999999998752
Q gi|254780544|r  400 ESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMI  446 (448)
Q Consensus       400 ~~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~i  446 (448)
                      +..+++.+|+|||||||||++|||+||+|++.++++++++.+.|+.|
T Consensus       399 ~~~~~~~~wvLiR~SgTEP~iRi~~Ea~s~e~~~~l~~~~~~~Ik~i  445 (445)
T PRK10887        399 EAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV  445 (445)
T ss_pred             HHHHCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             99717983999973699507999994399999999999999998439


No 4  
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity.  The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily.  This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional 
Probab=100.00  E-value=0  Score=735.76  Aligned_cols=428  Identities=23%  Similarity=0.387  Sum_probs=385.7

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV   84 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l   84 (448)
                      ||||+||||++|. +|||++|.++|.|++++++   .+++|+||||+|.+|++|++++++||+++|++|+++|.+|||++
T Consensus         1 iFgt~GiRG~~~~-~lt~e~~~~ig~a~~~~~~---~~~~V~VG~D~R~ss~~l~~a~~~gl~~~G~~V~~~g~~pTP~~   76 (441)
T cd05805           1 LFGGRGVSGLINV-DITPEFATRLGAAYGSTLP---PGSTVTVSRDASRASRMLKRALISGLLSTGVNVRDLGALPLPVA   76 (441)
T ss_pred             CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf             9588743355289-9799999999999999827---99989999689855899999999999986994999078771899


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r   85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV  164 (448)
Q Consensus        85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l  164 (448)
                      +|+++++++++||||||||||++||||||++++|.+++++.+++||+.+..+..... ..++++.....+++.+.|++++
T Consensus        77 ~~a~~~~~~~~GI~ITASHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~-~~~~~g~~~~~~d~~~~Y~~~l  155 (441)
T cd05805          77 RYAIRFLGASGGIHVRTSPDDPDKVEIEFFDSRGLNISRAMERKIENAFFREDFRRA-HVDEIGDITEPPDFVEYYIRGL  155 (441)
T ss_pred             HHHHHHCCCCEEEEEECCCCCHHCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC-CHHHCCCEEECCCHHHHHHHHH
T ss_conf             999985599838998447897200435202567886898999999999834322347-8644676366441799999999


Q ss_pred             HHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf             6326310-211896699984466543333222123332222222322235577-44221013777642002343036753
Q gi|254780544|r  165 KRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ-LDCGSTNVLSLQRKVHEVRADIGIAL  242 (448)
Q Consensus       165 ~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~-~~~~~~~~~~l~~~v~~~~ad~Gia~  242 (448)
                      .+.++.. +..+++||++||+||+++.+++++|+++||+++.+|+.||+.++. ++|.++++..+.+.|++.++|+|++|
T Consensus       156 ~~~i~~~~i~~~~~kVvvD~~nGa~~~~~~~il~~lg~~v~~i~~~~d~~~~~~~~~~~~~l~~l~~~v~~~~aDlGia~  235 (441)
T cd05805         156 LRALDTSGLKKSGLKVVIDYAYGVAGIVLPGLLSRLGCDVVILNARLDEDAPRTDTERQRSLDRLGRIVKALGADFGVII  235 (441)
T ss_pred             HHHCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             98649776731597899989997478899999998298279952567899998998660129999999983588768888


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             15521000133223755331135677776553200223433322113600444320012111112332110111110289
Q gi|254780544|r  243 DGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNG  322 (448)
Q Consensus       243 DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~  322 (448)
                      ||||||++++|++|+++++|++++|++.++++++  ++..||.|+.||.+++++++++|++++||+|||+|+.++|.+ +
T Consensus       236 DgDgDR~~~vD~~G~~i~~d~l~~l~a~~~~~~~--~~~~vv~~v~ss~~~~~i~~~~g~~~~~t~vG~~~i~~~m~~-~  312 (441)
T cd05805         236 DPNGERLILVDEAGRVISDDLLTALVSLLVLKSE--PGGTVVVPVTAPSVIEQLAERYGGRVIRTKTSPQALMEAALE-N  312 (441)
T ss_pred             CCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHC--CCCCEEEEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-C
T ss_conf             6998779999799968687899999999999846--899779987574799999998199669963638999999974-7


Q ss_pred             CEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-
Q ss_conf             7001346623653010001444233202466777558888999986564230000000567651155899999876554-
Q gi|254780544|r  323 FNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAES-  401 (448)
Q Consensus       323 ~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  401 (448)
                      +++|||+|||++|++|.+++||++++++++++++.++++|+++++++|++++...+++|+..   .+.++++.+.+... 
T Consensus       313 ~~~gge~sg~~~~~~~~~~~Dgi~~~l~lle~l~~~~~~ls~l~~~l~~~~~~~~~i~~~~~---~k~~~~~~l~~~~~~  389 (441)
T cd05805         313 VVLAGDGDGGFIFPEFHPGFDAIAALVKILEMLARTNISLSQIVDELPRFYVLHKEVPCPWE---AKGRVMRRLIEEAPD  389 (441)
T ss_pred             CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCHH---HHHHHHHHHHHHCCC
T ss_conf             76445666516944778883599999999999997199899999855564155511038788---999999999875723


Q ss_pred             ----HCC------CCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             ----307------886599967798227999961599899999999999998
Q gi|254780544|r  402 ----ELR------GIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI  443 (448)
Q Consensus       402 ----~~~------~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i  443 (448)
                          .+|      +.+|++||||||||++|||+||+|++.++++++++.+.|
T Consensus       390 ~~~~~~DGik~~~~~gwiliRpSgTEP~lriy~Ea~~~e~~~~l~~~~~~~i  441 (441)
T cd05805         390 KSIELIDGVKIYEDDGWVLVLPDADEPLCHIYAEGSDQERAEELTEFYVEKV  441 (441)
T ss_pred             CCEEECCEEEEECCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             5720112279971988999975188426899995199999999999998359


No 5  
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00  E-value=0  Score=735.44  Aligned_cols=429  Identities=29%  Similarity=0.432  Sum_probs=387.7

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV   84 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l   84 (448)
                      +|||+||||++|. +|||+++.++|+|||+++..+..+++|+||||+|.+|++|++++++||+++|++|+++|.+|||++
T Consensus         1 ~f~t~GiRG~~~~-~lt~~~~~~~g~a~~~~l~~~~~~~~VvVg~D~R~~s~~~~~~~a~gl~s~G~~V~~~g~~pTP~~   79 (445)
T cd05803           1 IISISGIRGIVGE-GLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVIDLGIAPTPTV   79 (445)
T ss_pred             CCCCCEECCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf             9873625301899-979999999999999999974899849999699866899999999999977984998898873899


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r   85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV  164 (448)
Q Consensus        85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l  164 (448)
                      +|++++++++|||||||||||++||||||++++|.++.++++++|+++++....... ..+.++......+..+.|++.+
T Consensus        80 ~~~v~~~~~~~GI~ITASHNP~~~NGiK~~~~~G~~i~~~~~~~I~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~yi~~~  158 (445)
T cd05803          80 QVLVRQSQASGGIIITASHNPPQWNGLKFIGPDGEFLTPDEGEEVLSCAEAGSAQKA-GYDQLGEVTFSEDAIAEHIDKV  158 (445)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCCCCEECCCCCEECCHHHHHHHHHHHHCCCCCCC-CCCCCCCEEECCCHHHHHHHHH
T ss_conf             999985599858999957888422442203788806788999999999867776666-5023674563441799999999


Q ss_pred             HHCCCCH---HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf             6326310---21189669998446654333322212333222222232223557-7442210137776420023430367
Q gi|254780544|r  165 KRTLPRD---VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGINI-NLDCGSTNVLSLQRKVHEVRADIGI  240 (448)
Q Consensus       165 ~~~~~~~---~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~-~~~~~~~~~~~l~~~v~~~~ad~Gi  240 (448)
                      .+.+..+   +..+++|||+||+||+++.+++++|++|||+++.+|++||+.|| +|+|.++++..+.+.+++.++|+|+
T Consensus       159 ~~~~~~~~~~~~~~~~kIvvd~~~G~~~~~~~~il~~lG~~vi~~~~~pdg~Fp~~p~p~~e~l~~l~~~v~~~~adlgi  238 (445)
T cd05803         159 LALVDVDVIKIRERNFKVAVDSVNGAGGLLIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQLCAAVKESGADVGF  238 (445)
T ss_pred             HHCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             83066333442348988999899887999999999973980798055589988789978889999999999856986799


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             53155210001332237553311356777765532002234333221136004443200121111123321101111102
Q gi|254780544|r  241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN  320 (448)
Q Consensus       241 a~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~  320 (448)
                      +|||||||++++|++|+++++|++++|+++++++....+ ..||.|++||.+++++++++|++++||+|||||+.+.|++
T Consensus       239 a~DgDaDR~~ivd~~G~~~~~d~~~~l~~~~l~~~~~~~-~~vv~t~~ss~~~~~ia~~~g~~~~~t~vG~k~i~~~m~~  317 (445)
T cd05803         239 AVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGGRK-GPVVVNLSTSRALEDIARKHGVPVFRSAVGEANVVEKMKE  317 (445)
T ss_pred             EECCCCCEEEEECCCCCEECCHHHHHHHHHHHHHHCCCC-CCEEECHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             987988768999799967781399999999999638888-8446337887579999998407669984444999999996


Q ss_pred             CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             89700134662365301000144423320246677755888899998656423000000056765115589999987655
Q gi|254780544|r  321 NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAE  400 (448)
Q Consensus       321 ~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  400 (448)
                      .++++|||+|||++|+++.+++||++++++++++++.++++|++|.+.+|+|+....++.|++..   ...+++.+.+..
T Consensus       318 ~~~~~ggE~sgg~~~~~~~~~~Dgi~~~~~ile~la~~~~~l~~l~~~~p~~~~~~~~~~~~~~~---~~~i~~~l~~~~  394 (445)
T cd05803         318 VDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAASGKPLSEIVDELPQYYISKTKVTIAGEA---LERLLKKLEAYF  394 (445)
T ss_pred             CCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCHHH---HHHHHHHHHHHH
T ss_conf             69878871658786256431888899999999999984999999998614432211244156201---999999998751


Q ss_pred             -----HHCCC------CCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
Q ss_conf             -----43078------8659996779822799996159989999999999
Q gi|254780544|r  401 -----SELRG------IDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDL  439 (448)
Q Consensus       401 -----~~~~~------~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~  439 (448)
                           ..+||      .+|++||||||||++|||+||+|++.+++|++++
T Consensus       395 ~~~~~~~~DGik~~~~dgwiliRpSgTEP~iriy~Ea~~~e~a~~l~~~~  444 (445)
T cd05803         395 KDAEASTLDGLRLDSEDSWVHVRPSNTEPIVRIIAEAPTQDEAEALADRF  444 (445)
T ss_pred             HCCCCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf             01563014638997598899998119811689999759999999998754


No 6  
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00  E-value=0  Score=732.85  Aligned_cols=430  Identities=30%  Similarity=0.425  Sum_probs=380.1

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE-CCCCHHH
Q ss_conf             3358601550687788999999999999999723-7998389996687797999999999999789879996-2678089
Q gi|254780544|r    6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGK-KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL-GPIPSPA   83 (448)
Q Consensus         6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~-~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~-g~~ptP~   83 (448)
                      |||+||||++|+ +|||+++.++|+|||+++++. ..+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+
T Consensus         3 FGT~GiRG~~~~-~lt~~~v~~ig~a~~~~l~~~~~~~~~Vvvg~D~R~ss~~~~~a~~~gl~s~G~~V~~~~g~~pTP~   81 (461)
T cd05800           3 FGTDGWRGIIAE-DFTFENVRRVAQAIADYLKEEGGGGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLSDRPVPTPA   81 (461)
T ss_pred             CCCCCCCEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
T ss_conf             389973214799-9899999999999999999747999979999789825899999999999977997998899887599


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999871992589886547775201256403654567835789999996156643344543322211135425666887
Q gi|254780544|r   84 VAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEH  163 (448)
Q Consensus        84 l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~  163 (448)
                      ++|++++++++|||||||||||++||||||++++|.++.++.+++||+.++........ ....+.....+ +.+.|+++
T Consensus        82 ~~~~~~~~~a~~GImITASHNP~~~NGiK~~~~~G~~~~~~~~~~ie~~~~~~~~~~~~-~~~~~~~~~~d-~~~~Y~~~  159 (461)
T cd05800          82 VSWAVKKLGAAGGVMITASHNPPEYNGVKVKPAFGGSALPEITAAIEARLASGEPPGLE-ARAEGLIETID-PKPDYLEA  159 (461)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEC-CHHHHHHH
T ss_conf             99999964998699998378986454299978999838999999999997167755554-35798379817-58999999


Q ss_pred             HHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf             76326310-211896699984466543333222123332222222322235577--442210137776420023430367
Q gi|254780544|r  164 VKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ--LDCGSTNVLSLQRKVHEVRADIGI  240 (448)
Q Consensus       164 l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~--~~~~~~~~~~l~~~v~~~~ad~Gi  240 (448)
                      +++.++.+ ++.+++|||+||+||+++.+++++|+.+||+++.+|+.||+.|++  |+|.++++..|.+.+++.++|+|+
T Consensus       160 l~~~i~~~~i~~~~lkIvid~~~G~~~~~~~~ll~~lg~~v~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~adlgi  239 (461)
T cd05800         160 LRSLVDLEAIREAGLKVVVDPMYGAGAGYLEELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLGELAEAVKEGGADLGL  239 (461)
T ss_pred             HHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             98754955551269779998899656655899998609749997771479999879998768999999999833988346


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             53155210001332237553311356777765532002234333221136004443200121111123321101111102
Q gi|254780544|r  241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN  320 (448)
Q Consensus       241 a~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~  320 (448)
                      +|||||||++++|++|++++||++++|+++++++++..++ .||.|++||.+++++++++|++++||+|||||+.++|++
T Consensus       240 a~DgDaDR~~~vd~~G~~i~gd~l~alla~~l~~~~~~~~-~vv~tv~ss~~i~~i~~~~g~~~~rt~vG~k~i~~~m~~  318 (461)
T cd05800         240 ATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLRG-PVVKTVSTTHLIDRIAEKHGLPVYETPVGFKYIAEKMLE  318 (461)
T ss_pred             EECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCCC-CEEEEECCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf             7649976799995899579898999999999997078888-736861583799999997798899964873899988764


Q ss_pred             CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH-C---CCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             897001346623653010001444233202466777558888999986564-2---300000005676511558999998
Q gi|254780544|r  321 NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE-Y---PQFLRSVSVKDTSILNSSSIVQAI  396 (448)
Q Consensus       321 ~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~-~---~~~~~~~~~~~~~~~~~~~i~~~~  396 (448)
                      .+++||||+|||++|++|.+++||+++++++|+++++++++++++++.+++ |   +....++.++   +.++..+++.+
T Consensus       319 ~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~~le~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~k~~~~~~l  395 (461)
T cd05800         319 EDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVAELEEEYGPSYYDRIDLRLT---PAQKEAILEKL  395 (461)
T ss_pred             HCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECC---HHHHHHHHHHH
T ss_conf             201357445587612676879988999999999999849999999999899748775225642169---89999999998


Q ss_pred             HHHHH------------HCC-------CCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             76554------------307-------88659996779822799996159989999999999999
Q gi|254780544|r  397 ADAES------------ELR-------GIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKV  442 (448)
Q Consensus       397 ~~~~~------------~~~-------~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~  442 (448)
                      .+...            .+|       +.+|++||||||||++|||+||+|++.+++++++++++
T Consensus       396 ~~~~~~~~~~~~~~~~~~iDGlk~~~~dg~w~lvRpSgTEP~iriy~Ea~~~e~~~~ll~e~~~l  460 (461)
T cd05800         396 KNEPPLSIAGGKVDEVNTIDGVKLVLEDGSWLLIRPSGTEPLLRIYAEAPSPEKVEALLDAGKKL  460 (461)
T ss_pred             HHCCCHHHCCCCCEEEEECCCEEEEECCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             71442233477511688136379994698399998649801699999979999999999999855


No 7  
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00  E-value=0  Score=724.71  Aligned_cols=424  Identities=35%  Similarity=0.592  Sum_probs=385.4

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV   84 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l   84 (448)
                      ||||+||||++|. +|||++|.++|+|+|++++    .++|+||||+|++|++|++++++||+++|++|+++|.+|||++
T Consensus         1 iFGt~GiRG~~~~-~~t~~~~~~l~~a~~~~~~----~~~vvIg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~pTP~~   75 (439)
T cd03087           1 LFGTSGIRGVVGE-ELTPELALKVGKALGTYLG----GGTVVVGRDTRTSGPMLKNAVIAGLLSAGCDVIDIGIVPTPAL   75 (439)
T ss_pred             CCCCCCCEEECCC-CCCHHHHHHHHHHHHHHCC----CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf             9488851003799-9899999999999998808----9859999589845899999999999977996999588883999


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r   85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV  164 (448)
Q Consensus        85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l  164 (448)
                      +|++++++ ++||||||||||++||||||++++|.+++++.+++||+++....+++ ..+++++.....+++.+.|++.+
T Consensus        76 ~~~v~~~~-~~Gi~ITASHNP~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~-~~~~~~g~~~~~~~~~~~Y~~~l  153 (439)
T cd03087          76 QYAVRKLG-DAGVMITASHNPPEYNGIKLVNPDGTEFSREQEEEIEEIIFSERFRR-VAWDEVGSVRREDSAIDEYIEAI  153 (439)
T ss_pred             HHHHHHHC-CCEEEEEECCCCHHHCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC-CCHHHCCCEEECCHHHHHHHHHH
T ss_conf             99999718-81699994589711180898568885679999999999984699876-78644583586412799999999


Q ss_pred             HHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf             6326310211896699984466543333222123332222222322235577--44221013777642002343036753
Q gi|254780544|r  165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ--LDCGSTNVLSLQRKVHEVRADIGIAL  242 (448)
Q Consensus       165 ~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~--~~~~~~~~~~l~~~v~~~~ad~Gia~  242 (448)
                      ++.++... .+++||++||+||+++.+++++|+++||+++.+|+.||+.||+  |+|.++++..+++.+++.++|+|+++
T Consensus       154 ~~~i~~~~-~~~~kvvvD~~~G~~~~~~~~ll~~lg~~v~~~~~~~d~~fp~~~p~p~~~~l~~~~~~v~~~~ad~gia~  232 (439)
T cd03087         154 LDKVDIDG-GKGLKVVVDCGNGAGSLTTPYLLRELGCKVITLNANPDGFFPGRPPEPTPENLSELMELVRATGADLGIAH  232 (439)
T ss_pred             HHHCCHHH-CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             86458233-27988999899870788999999981996799842208976887998768899999999984399879997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             15521000133223755331135677776553200223433322113600444320012111112332110111110289
Q gi|254780544|r  243 DGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNG  322 (448)
Q Consensus       243 DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~  322 (448)
                      ||||||++++|++|++++||++++|++++++++.   .+.||.|++||..++++++++|+++++|+||+||+.++|++.+
T Consensus       233 DgD~DR~~~vd~~G~~i~gd~i~~Lla~~ll~~~---~~~vv~~v~ts~~~~~ia~~~g~~~~~t~~G~k~i~~~~~~~~  309 (439)
T cd03087         233 DGDADRAVFVDEKGRFIDGDKLLALLAKYLLEEG---GGKVVTPVDASMLVEDVVEEAGGEVIRTPVGDVHVAEEMIENG  309 (439)
T ss_pred             CCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHC
T ss_conf             5987478998589759889999999999999768---9989994632789999999819863011567499999998508


Q ss_pred             CEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH--
Q ss_conf             700134662365301000144423320246677755888899998656423000000056765115589999987655--
Q gi|254780544|r  323 FNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAE--  400 (448)
Q Consensus       323 ~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  400 (448)
                      +.||||+|||++|++|.+++||+++++++++++++. ++|+++++.+|+|+....++++++   ..+..+++.+.+..  
T Consensus       310 ~~~g~E~sg~~~f~~~~~~~Dgi~a~~~~lel~~~~-~~Ls~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~~~~  385 (439)
T cd03087         310 AVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAEE-KPLSELLDELPKYPLLREKVECPD---EKKEEVMEAVEEELSD  385 (439)
T ss_pred             CEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHCEEEEEEECCH---HHHHHHHHHHHHHHHH
T ss_conf             259983667886268677886999999999999838-999999987476462237898677---7699999999986231


Q ss_pred             --HH---CCC------CCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             --43---078------86599967798227999961599899999999999998
Q gi|254780544|r  401 --SE---LRG------IDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI  443 (448)
Q Consensus       401 --~~---~~~------~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i  443 (448)
                        .+   +||      .+|++||||||||++|||+||+|++.+++++++++++|
T Consensus       386 ~~~~~~~iDGik~~~~dgw~liRpSgTEp~iriy~Ea~~~e~a~~l~~e~~~~i  439 (439)
T cd03087         386 ADEDVDTIDGVRIEYEDGWVLIRPSGTEPKIRITAEAKTEERAKELLEEGRSKV  439 (439)
T ss_pred             CCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             226623565089983898999981198126899998499999999999999659


No 8  
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00  E-value=0  Score=717.83  Aligned_cols=425  Identities=32%  Similarity=0.466  Sum_probs=372.8

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV   84 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l   84 (448)
                      |||++||||++|+ +|||+++.++|+|||++++.+ .+++|+||||+|++|++|++++++||+++|++|+++|.+|||++
T Consensus         1 iF~~~~IRG~~~~-~~t~e~~~~l~~A~a~~l~~~-~~~~Vvig~DtR~ss~~~~~a~~~gl~s~G~~V~~~g~~pTP~~   78 (443)
T cd03089           1 IFRAYDIRGIAGE-ELTEEIAYAIGRAFGSWLLEK-GAKKVVVGRDGRLSSPELAAALIEGLLAAGCDVIDIGLVPTPVL   78 (443)
T ss_pred             CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf             9887764236799-969999999999999999874-99979999699967899999999999977996999798874999


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r   85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV  164 (448)
Q Consensus        85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l  164 (448)
                      +|+++++++++||||||||||++|||+||++++| ++.++..++|++.+++.....   ....+..... ++.+.|++++
T Consensus        79 ~~~v~~~~~~~GI~ITASHNP~e~NGiK~~~~~g-~~~~~~i~~i~~~~~~~~~~~---~~~~g~~~~~-d~~~~Y~~~l  153 (443)
T cd03089          79 YFATFHLDADGGVMITASHNPPEYNGFKIVIGGG-PLSGEDIQALRERAEKGDFAA---ATGRGSVEKV-DILPDYIDRL  153 (443)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCCCCC---CCCCCEEEEC-CHHHHHHHHH
T ss_conf             9999852897589997168987667579988999-969899999999985678655---5789818975-6499999999


Q ss_pred             HHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCCCCCCEEEE
Q ss_conf             632631021189669998446654333322212333222222232223557744221---01377764200234303675
Q gi|254780544|r  165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS---TNVLSLQRKVHEVRADIGIA  241 (448)
Q Consensus       165 ~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~---~~~~~l~~~v~~~~ad~Gia  241 (448)
                      .+.++.  ..+++||++||+||+++.+++++|++|||+++.+|+.||+.||+..|+|   .++..+.+.+++.++|+|++
T Consensus       154 ~~~i~~--~~~~~kivvD~~~Ga~~~~~~~il~~lG~~v~~i~~~~Dg~f~~~~p~p~~~~~l~~l~~~v~~~~adlGia  231 (443)
T cd03089         154 LSDIKL--GKRPLKVVVDAGNGAAGPIAPQLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLEDLIAAVKENGADLGIA  231 (443)
T ss_pred             HHHCCC--CCCCCEEEEECCCCCCHHEHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             875474--557868999889985313438789875993643366657888988989886678999999986404426788


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             31552100013322375533113567777655320022343332211360044432001211111233211011111028
Q gi|254780544|r  242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNN  321 (448)
Q Consensus       242 ~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~  321 (448)
                      |||||||++++|++|++++||++++|+++++++++  ++..||.++.||..++++++++|+++++|+||||||.+.|++.
T Consensus       232 ~DgDgDR~~~vd~~G~~l~~d~i~~ll~~~~l~~~--~~~~vV~~~~ss~~l~~~~~~~g~~~~~t~vG~k~i~~~m~~~  309 (443)
T cd03089         232 FDGDGDRLGVVDEKGEIIWGDRLLALFARDILKRN--PGATIVYDVKCSRNLYDFIEEAGGKPIMWKTGHSFIKAKMKET  309 (443)
T ss_pred             ECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             75998779999799858189999999999999858--9995112543127799999984894760277879999999851


Q ss_pred             CCEECCCCCCEEEEEC-CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEE-EEEECCCCCCCCHHHHHHHHHH-
Q ss_conf             9700134662365301-000144423320246677755888899998656423000-0000567651155899999876-
Q gi|254780544|r  322 GFNVGGEQSGHIILSD-YGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFL-RSVSVKDTSILNSSSIVQAIAD-  398 (448)
Q Consensus       322 ~~~~g~E~sg~~~~~~-~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~-  398 (448)
                      ++.+|||+|||++|++ |...+||+++++++|++++.++++++++++.+|+|++.. .++.|++   .++..+++.+.+ 
T Consensus       310 ~~~~ggE~SGh~~~~e~~~~~~Dgi~a~l~ile~l~~~~~~l~~i~~~lp~~~~~~~i~~~~~~---~~k~~~~~~l~~~  386 (443)
T cd03089         310 GALLAGEMSGHIFFKDRWYGFDDGIYAALRLLELLSKSGKTLSELLADLPKYFSTPEIRIPVTE---EDKFAVIERLKEH  386 (443)
T ss_pred             CCEEEEEEECEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCH---HHHHHHHHHHHHH
T ss_conf             5079987313188646567787299999999999997399999999860550587557430783---7699999999997


Q ss_pred             ---HHHH---CCC------CCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             ---5543---078------86599967798227999961599899999999999998
Q gi|254780544|r  399 ---AESE---LRG------IDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI  443 (448)
Q Consensus       399 ---~~~~---~~~------~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i  443 (448)
                         ...+   +||      .+|++||||||||++|||+||+|++.+++|+++++++|
T Consensus       387 ~~~~~~~~~~~DGik~~~~dgwvliRpSgTEP~lriy~Ea~~~e~ae~l~~~~~~~i  443 (443)
T cd03089         387 FEFPGAEIIDIDGVRVDFEDGWGLVRASNTEPVLVLRFEADTEEGLEEIKAELRKLL  443 (443)
T ss_pred             HHHCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             651225611456379974998999984298637899996599999999999999559


No 9  
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=711.46  Aligned_cols=441  Identities=44%  Similarity=0.718  Sum_probs=385.4

Q ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             65203358601550687788999999999999999723799838999668779799999999999978987999626780
Q gi|254780544|r    2 KRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPS   81 (448)
Q Consensus         2 ~r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~pt   81 (448)
                      .+.+|||+||||+++. +|||+++.++|+|+|++++. ...++|+||||+|.+|++|++++++||+++|++|+++|.+||
T Consensus         6 ~~~~FGT~GiRG~~~~-~lt~~~~~~~g~a~~~~l~~-~~~~~VvVG~D~R~ss~~~~~a~~~gl~~~G~~v~~~g~~pT   83 (464)
T COG1109           6 KKLLFGTDGIRGVAGE-ELTPEFALKLGRALGSVLRK-KGAPKVVVGRDTRLSSEMLAAALAAGLTSAGIDVYDLGLVPT   83 (464)
T ss_pred             CCCEECCCCEEEECCC-CCCHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             4651678763220056-67999999999999998402-589749999279878099999999999988986999588784


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             89999998719925898865477752012564036545678357899999961566-43344543322211135425666
Q gi|254780544|r   82 PAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDL-TSYLSCYDSIGHAKRVDGVHDRY  160 (448)
Q Consensus        82 P~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y  160 (448)
                      |+++|+++++++++||||||||||++||||||++++|.+++++.+++|+..+.... ... ..+...|.+...+...+.|
T Consensus        84 P~v~f~~~~~~~~~gimITASHNP~~yNGiK~~~~~G~~i~~~~e~~Ie~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~Y  162 (464)
T COG1109          84 PAVAFATRKLGADAGVMITASHNPPEYNGIKFFGSDGGKISDDIEEEIEAILAEEVDLPR-PSWGELGRLKRIPDALDRY  162 (464)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCHHCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCCEECHHHHHHH
T ss_conf             899999986499736999568999334769998699868988999999998715544555-5412367401126689999


Q ss_pred             HHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHCCCCCCE
Q ss_conf             8877632631021189669998446654333322212333222222232223557--74422101377764200234303
Q gi|254780544|r  161 IEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGINI--NLDCGSTNVLSLQRKVHEVRADI  238 (448)
Q Consensus       161 i~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~--~~~~~~~~~~~l~~~v~~~~ad~  238 (448)
                      ++++++.++.+...+++|||+||+||+++.+++++|++|||+++.+++.||+.||  +|+|.++++..|++.+++.++|+
T Consensus       163 ~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~~~v~~~~aDl  242 (464)
T COG1109         163 IEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELGAEVVSINCDPDGLFPNINPNPGETELLDLAKAVKEHGADL  242 (464)
T ss_pred             HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf             99999864542244687799978987236779999997698699854636886788898998403999999997179978


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             67531552100013322375533113567777655320022343332211360044432001211111233211011111
Q gi|254780544|r  239 GIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYM  318 (448)
Q Consensus       239 Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~  318 (448)
                      |++|||||||++++|++|++++||++++|++.|++++...+  .||.|+.||.+++.+++.+|++++||+|||+||.++|
T Consensus       243 gia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~ll~~~~~~--~vV~tv~ss~~~~~i~~~~g~~~~~t~vG~k~i~~~~  320 (464)
T COG1109         243 GIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEKGKLP--TVVTTVMSSLALEKIAKKLGGKVVRTKVGDKYIAEKM  320 (464)
T ss_pred             EEEECCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf             99976998669999589978772799999999999657887--4999524757899999984991899556669999999


Q ss_pred             HCCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHH-HHHCCC-EEEEEECCCCCCC-CHHHHHHH
Q ss_conf             02897001346623653010001444233202466777558888999986-564230-0000005676511-55899999
Q gi|254780544|r  319 KNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHC-FEEYPQ-FLRSVSVKDTSIL-NSSSIVQA  395 (448)
Q Consensus       319 ~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~-l~~~~~-~~~~~~~~~~~~~-~~~~i~~~  395 (448)
                      ++.+++||||+|||++|++|.+++||+++++++++++++.+++++++... ++.+++ ...++++.+.... .....++.
T Consensus       321 ~~~~~~~ggE~sg~~~~~~~~~~~Dgi~aal~ilel~~~~~~~lsel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (464)
T COG1109         321 RENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGKSLSELLAELLPKYPQSVEINVRVTDEGKAEVLEKLLEE  400 (464)
T ss_pred             HHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf             85497786147563886788899519999999999999858987799997644422663577875574204689999985


Q ss_pred             HHH--HHHHCCC------CCEE-EEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             876--5543078------8659-99677982279999615998999999999999987520
Q gi|254780544|r  396 IAD--AESELRG------IDRL-IVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMID  447 (448)
Q Consensus       396 ~~~--~~~~~~~------~~w~-liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~i~  447 (448)
                      ...  ....+++      .+|+ +||||||||++|||+|+.+.+.++++.+++.++|+...
T Consensus       401 ~~~~~~~~~idgv~~~~~~g~~~lvRpSGTEP~lrvy~Ea~~~~~~~~~~~~~~~~v~~~~  461 (464)
T COG1109         401 LREAKKVDTIDGVKVELEDGGRVLVRPSGTEPLIRVYVEAKDEELAEELAEEIAELVREAL  461 (464)
T ss_pred             CCCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             6233403003339999079958999837998089999983898999999999999998754


No 10 
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00  E-value=0  Score=701.96  Aligned_cols=428  Identities=27%  Similarity=0.412  Sum_probs=364.9

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf             33586015506877889999999999999997237998389996687797999999999999789879996267808999
Q gi|254780544|r    6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVA   85 (448)
Q Consensus         6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~   85 (448)
                      |..+||||++|. +|||+++.++|+|||++++.. .+++|+||||+|.+|++|++++++||+++|++|+++|.+|||+++
T Consensus         1 f~~ydIRGi~~~-~lt~e~~~~~g~A~~~~l~~~-~~~~Vvvg~D~R~ss~~~~~~~a~gl~~~Gi~V~~~g~~pTP~l~   78 (445)
T PRK09542          1 IKAYDVRGLVGE-ELDEDFVRDVGAAFARLMRAE-GATQVVIGHDMRDSSPELAAAFAEGVTAQGLDVVRIGLASTDQLY   78 (445)
T ss_pred             CCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH
T ss_conf             977442210599-809999999999999998766-998799997998568999999999999879909989989878999


Q ss_pred             HHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99987199258988654777520125640365456783578-99999961566433445433222111354256668877
Q gi|254780544|r   86 MLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIE-DRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV  164 (448)
Q Consensus        86 ~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~-~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l  164 (448)
                      |++++++++ |+||||||||++||||||+.++|.++..+.. .++++.+......   .....+.+.. .++.+.|++++
T Consensus        79 ~~~~~~~~~-GimITASHNP~~~NGiK~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~i~~-~d~~~~Y~~~l  153 (445)
T PRK09542         79 FASGLLDCP-GAMFTASHNPAAYNGIKLCRAGAKPVGQDTGLAAIRDDLIAGVPA---YDGPPGTVTE-RDVLADYAAFL  153 (445)
T ss_pred             HHHCCCCCC-EEEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC---CCCCCCEEEE-CCHHHHHHHHH
T ss_conf             985115887-699966889876775997679998688207999999998669965---4568970452-34599999999


Q ss_pred             HHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCCCCCCEEEE
Q ss_conf             632631021189669998446654333322212333222222232223557744221---01377764200234303675
Q gi|254780544|r  165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS---TNVLSLQRKVHEVRADIGIA  241 (448)
Q Consensus       165 ~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~---~~~~~l~~~v~~~~ad~Gia  241 (448)
                      .+.++... .+++|||+||+||+++.+++.+|+.|||+++.+|++||+.||+.+|+|   +++..|++.|++.++|+|++
T Consensus       154 ~~~vd~~~-~~~lkIvvD~~~Ga~~~~~~~il~~lg~~v~~l~~~~dg~fp~~~p~P~~~~~l~~l~~~v~~~~adlGia  232 (445)
T PRK09542        154 RSLVDLSG-IRPLKVAVDAGNGMGGHTVPAVLGGLPITLLPLYFELDGTFPNHEANPLDPANLVDLQAFVRETGADIGLA  232 (445)
T ss_pred             HHHCCHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             86579121-47887999888847889999987346975524566789999998989899999999999998649987401


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             31552100013322375533113567777655320022343332211360044432001211111233211011111028
Q gi|254780544|r  242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNN  321 (448)
Q Consensus       242 ~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~  321 (448)
                      |||||||++++|++|+++++|++++|+++++++++  ++..||.++.||..++++++++|++++||+||||||.++|.+.
T Consensus       233 ~DgD~DR~~~vd~~G~~i~~d~~~al~~~~~l~~~--~~~~vv~~v~ts~~~~~~~~~~g~~~~~t~vG~k~i~~~m~~~  310 (445)
T PRK09542        233 FDGDADRCFVVDERGQPVSPSAVTALVAARELARE--PGATIIHNLITSRAVPELVAERGGTPVRTRVGHSFIKALMAET  310 (445)
T ss_pred             ECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHC--CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHC
T ss_conf             56998758999899968578899999999998636--6877234420667899999975998999378479999999864


Q ss_pred             CCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEE-EEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             97001346623653010001444233202466777558888999986564230000-00056765115589999987655
Q gi|254780544|r  322 GFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLR-SVSVKDTSILNSSSIVQAIADAE  400 (448)
Q Consensus       322 ~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~  400 (448)
                      +++||||+|||++|++|.+++||+++++++|++++.+++++++|++.+++|+.... +.+..+.. .....+++.+.+..
T Consensus       311 ~~~~GgE~Sg~~~~~~~~~~~Dgi~aal~~l~~l~~~~~~lsel~~~~~~y~~~~~i~~~~~~~~-~~~~~~~~~~~~~~  389 (445)
T PRK09542        311 GAIFGGEHSAHYYFRDFWGADSGMLAALHVLAALGEQDRPLSELMADYQRYAASGEINSTVADAP-ARMEAVLKAFGGRI  389 (445)
T ss_pred             CCEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCHH-HHHHHHHHHHHHCC
T ss_conf             93899968456875687889859999999999999759978999875400367644544248989-99999998734012


Q ss_pred             HH----------CCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf             43----------078865999677982279999615998999999999999987
Q gi|254780544|r  401 SE----------LRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIP  444 (448)
Q Consensus       401 ~~----------~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~  444 (448)
                      .+          +.+.+|++||||||||++|||+||+|++.++++++++.++|+
T Consensus       390 ~~i~~~DGvki~~~d~~wvlvRpSgTEP~iRi~~Ea~~~e~~~~l~~~~~~~vk  443 (445)
T PRK09542        390 VSVDHLDGVTVDLGDGSWFNLRASNTEPLLRLNVEARTEEEVDAVVDEVLAIIR  443 (445)
T ss_pred             CCEECCCCEEEEECCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             454403638999479838999224990059999972999999999999999973


No 11 
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00  E-value=0  Score=696.78  Aligned_cols=438  Identities=24%  Similarity=0.315  Sum_probs=353.6

Q ss_pred             CCCCCEEEEECC--CCCCHHHHHHHHHHHHHHHHHCC---CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE-CCC
Q ss_conf             335860155068--77889999999999999997237---998389996687797999999999999789879996-267
Q gi|254780544|r    6 FGTDGIRGKSNT--FPITPNFMMRIGIAVGYLFRGKK---KHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL-GPI   79 (448)
Q Consensus         6 FGt~GiRG~~~~--~~~t~~~v~~i~~a~~~~~~~~~---~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~-g~~   79 (448)
                      |||+||||+++.  ..+|++++.++++|++.|+++..   .+++|+||||+|++|++|+++++++|+++|++|+++ |.+
T Consensus         4 FGT~GiRG~vg~~~~~~n~~~v~~~~~a~~~~l~~~~~~~~~~~VvVG~DtR~ss~~~a~~~a~~l~~~G~~V~~~~g~~   83 (487)
T cd05799           4 FGTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAANGIKVYLFDDLR   83 (487)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             55885252368998868899999999999999998567678986999978986789999999999997799799889978


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCCCCCCC-CC
Q ss_conf             8089999998719925898865477752012564036545678357899999961566433445---4332221113-54
Q gi|254780544|r   80 PSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSC---YDSIGHAKRV-DG  155 (448)
Q Consensus        80 ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~---~~~~~~~~~~-~~  155 (448)
                      |||+++|++++++++|||||||||||++||||||++++|.++.++.+++|++.+++........   ....+..+.. ++
T Consensus        84 PTP~~~~~~~~~~a~~GImITASHNP~~~NGiK~~~~~G~~l~~~~~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (487)
T cd05799          84 PTPLLSFAVRHLGADAGIMITASHNPKEYNGYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIKFEEALDSGLIKYIGEE  163 (487)
T ss_pred             CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHH
T ss_conf             85799999996199857999348997522777987799984786688999999984335211553100247852776487


Q ss_pred             HHHHHHHHHHHCCC-CH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCC-CCCCCCH---HHH
Q ss_conf             25666887763263-10-21189669998446654333322212333222222---2322235577-4422101---377
Q gi|254780544|r  156 VHDRYIEHVKRTLP-RD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVI---GDKPNGININ-LDCGSTN---VLS  226 (448)
Q Consensus       156 ~~~~Yi~~l~~~~~-~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i---~~~pd~~~~~-~~~~~~~---~~~  226 (448)
                      +.+.|++++++.+. .. ...+++||++||+||+++.+++++|++|||+++.+   ++.|||.||+ +.|+|+.   +..
T Consensus       164 ~~~~Y~~~l~~~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~lG~~~v~~v~~~~~pDg~Fp~~~~pnPe~~~~l~~  243 (487)
T cd05799         164 IDDAYLEAVKKLLVNPELNEGKDLKIVYTPLHGVGGKFVPRALKEAGFTNVIVVEEQAEPDPDFPTVKFPNPEEPGALDL  243 (487)
T ss_pred             HHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             89999999987568844640389779995798738999999999769972699333434799989999989652567999


Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCC--CCCC--CCCCCCHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHHH
Q ss_conf             76420023430367531552100013--3223--75533113567777655320022-----343332211360044432
Q gi|254780544|r  227 LQRKVHEVRADIGIALDGDGDRVIIV--DEKG--AIVNGDQIMALIAREWMSHSLLR-----GNGIVTTVMSNIGLERFI  297 (448)
Q Consensus       227 l~~~v~~~~ad~Gia~DgD~DR~~iv--d~~G--~~i~~d~~~~lla~~ll~~~~~~-----~~~vv~~v~ss~~i~~~a  297 (448)
                      +.+.+++.++|+|++|||||||++++  |++|  ++++||++++|+++|+++..+.+     +..||.|+.||.++++++
T Consensus       244 ~~~~v~~~~aD~Gia~DGDaDR~~vv~~d~~g~~~~i~GD~i~al~a~~ll~~~~~~~~~~~~~~vv~t~~ss~~~~~ia  323 (487)
T cd05799         244 AIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGKLPKNPVIVKTIVSSELLRKIA  323 (487)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHH
T ss_conf             99999852898899977888746899985899779706589999999999999887166789977999840627999999


Q ss_pred             HCCCCCCCCCCCCCCCHHHHHHC-----CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHH---HCCCCHHHHHHHH
Q ss_conf             00121111123321101111102-----897001346623653010001444233202466777---5588889999865
Q gi|254780544|r  298 AGLGLSLKRTEVGDRYIMEYMKN-----NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIK---QYDKPVSTICHCF  369 (448)
Q Consensus       298 ~~~g~~v~~t~vG~k~i~~~~~~-----~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~---~~~~~l~~l~~~l  369 (448)
                      +++|++++||+|||||+.+.|.+     .+++||||+|||+++++|.+++||++++++++++++   .++++++++++++
T Consensus       324 ~~~g~~~~~t~VG~k~v~~~m~~~~~~~~~~~~ggEeS~G~~~~~~~~~~Dgi~aal~~lei~~~~~~~~~~l~e~l~~i  403 (487)
T cd05799         324 KKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKAQGKTLLDRLDEL  403 (487)
T ss_pred             HHCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             98799799927870999999998655587537886110474557865578679999999999999987599899999999


Q ss_pred             -HHCC---CEEEEEECCCCCC-CCHHHHHHHHHHHH----HHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             -6423---0000000567651-15589999987655----4307886599967798227999961599899999999999
Q gi|254780544|r  370 -EEYP---QFLRSVSVKDTSI-LNSSSIVQAIADAE----SELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLA  440 (448)
Q Consensus       370 -~~~~---~~~~~~~~~~~~~-~~~~~i~~~~~~~~----~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~  440 (448)
                       ++|+   +...++.+++... .....+++.+.+..    ..+++.+|++||||||||++|||+||.|++.++++.+++.
T Consensus       404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~~~~~~dg~w~lvR~SGTEP~iRvy~Ea~~~~~~e~~~~~~~  483 (487)
T cd05799         404 YEKYGYYKEKTISITFEGKEGPEKIKAIMDRLRNNPNVLTFYLEDGSRVTVRPSGTEPKIKFYIEVVGKKTLEEAEKKLD  483 (487)
T ss_pred             HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCHHHEEEEEEECCHHHHHHHHHHHH
T ss_conf             99828775405889836867699999999998635785999978984999976388423379997689999999999999


Q ss_pred             HHH
Q ss_conf             998
Q gi|254780544|r  441 KVI  443 (448)
Q Consensus       441 ~~i  443 (448)
                      ++.
T Consensus       484 ~~~  486 (487)
T cd05799         484 ALK  486 (487)
T ss_pred             HHH
T ss_conf             853


No 12 
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00  E-value=0  Score=690.24  Aligned_cols=439  Identities=22%  Similarity=0.326  Sum_probs=352.6

Q ss_pred             CCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CC
Q ss_conf             520-33586015506877889999999999999997237998389996687797999999999999789879996---26
Q gi|254780544|r    3 RRF-FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL---GP   78 (448)
Q Consensus         3 r~l-FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~---g~   78 (448)
                      ++| |||+||||.++..+||.+++.++++|+|.|++.++..++|+||||+|++|+.++..++++|+++|++|+.+   |.
T Consensus        19 ~ri~FGT~G~RG~~g~~~~n~~~v~~~~~al~~~~~~~~~~~~vvIG~D~R~~S~~~a~~aa~vl~a~Gi~V~l~~~~~~   98 (522)
T cd05801          19 QRVAFGTSGHRGSSLKGSFNEAHILAISQAICDYRKSQGITGPLFLGKDTHALSEPAFISALEVLAANGVEVIIQQNDGY   98 (522)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             57665685126776899988999999999999999972999878999689867699999999999978987999379984


Q ss_pred             CCHHHHHHHH------HHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-------
Q ss_conf             7808999999------871992589886547775201256403654567835789999996156643344543-------
Q gi|254780544|r   79 IPSPAVAMLT------RSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYD-------  145 (448)
Q Consensus        79 ~ptP~l~~a~------~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~-------  145 (448)
                      +|||+++|++      +++++++||||||||||++|||||+|+++|.+++.+.+++||+..+...........       
T Consensus        99 ~PTP~vsfaV~~~~~~~~~~~a~GImITASHNP~eyNGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~v~~~~~~~~  178 (522)
T cd05801          99 TPTPVISHAILTYNRGRTEGLADGIVITPSHNPPEDGGFKYNPPHGGPADTDITRWIEKRANALLANGLKGVKRIPLEAA  178 (522)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             78608999999876655317673499815889805686887568899699789999999998765403366676886575


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC--
Q ss_conf             -32221113542566688776326310-2118966999844665433332221233322222223222355--77442--
Q gi|254780544|r  146 -SIGHAKRVDGVHDRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGIN--INLDC--  219 (448)
Q Consensus       146 -~~~~~~~~~~~~~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~--~~~~~--  219 (448)
                       ..+... ..++.+.|++.+.+.++.+ ++.+++||++||+||++..+++++|+.+|++++.+++++||.|  +++++  
T Consensus       179 ~~~~~~~-~~d~~~~Y~~~l~~~vd~~~i~~~~lkIv~d~~~Gag~~~~~~ll~~~g~~v~~v~~~~dp~f~f~~~~~~g  257 (522)
T cd05801         179 LASGYTH-RHDFVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPYWQPIAEKYGLNLTVVNPKVDPTFRFMTLDHDG  257 (522)
T ss_pred             HCCCEEE-EEECHHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             0168379-864089999999876596555016976999668987411589999882998799898257999988989986


Q ss_pred             ----CCCHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCH
Q ss_conf             ----210137776420-02343036753155210001332237553311356777765532002--23433322113600
Q gi|254780544|r  220 ----GSTNVLSLQRKV-HEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLL--RGNGIVTTVMSNIG  292 (448)
Q Consensus       220 ----~~~~~~~l~~~v-~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~--~~~~vv~~v~ss~~  292 (448)
                          ++++...++..+ .+.++|+|+|+||||||++++|++|++++||++++|+++|+++++..  ++..|+.|++||.+
T Consensus       258 ~i~~np~~p~~l~~l~~~~~~~dlgiA~DgDaDR~~vvd~~g~~l~gd~i~~ll~~~ll~~r~~~~~~~~v~~Tvvss~~  337 (522)
T cd05801         258 KIRMDCSSPYAMAGLLKLKDKFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNKSAGVGKTLVSSSM  337 (522)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHH
T ss_conf             65789988899999997421567466127877714899789828878999999999999715015888616887237599


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEEC-----CCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf             444320012111112332110111110289700134662365301-----000144423320246677755888899998
Q gi|254780544|r  293 LERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSD-----YGSTGDGLVAALQVLRYIKQYDKPVSTICH  367 (448)
Q Consensus       293 i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~  367 (448)
                      ++++++++|+++++|+||||||.++|.+.++.||||+|||++|..     |.+++||+++++++++++++++++++++++
T Consensus       338 l~~ia~~~G~~~~~t~vGfK~i~~~m~~~~~~fGgEeS~G~~f~~~~g~~~~~dkDGi~aall~~e~~a~~gk~l~~ll~  417 (522)
T cd05801         338 IDRVAAALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEILAVTGKDPGQLYQ  417 (522)
T ss_pred             HHHHHHHCCCCEEECCCCHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999986994798048279999999868945887143686774168851003673899999999999986969999999


Q ss_pred             HHHH-CCCE-EEEEECCCCCCCCHHHH------------------HHHHHHHH---HHCC------CCCEEEEECCCCCC
Q ss_conf             6564-2300-00000567651155899------------------99987655---4307------88659996779822
Q gi|254780544|r  368 CFEE-YPQF-LRSVSVKDTSILNSSSI------------------VQAIADAE---SELR------GIDRLIVRASGTES  418 (448)
Q Consensus       368 ~l~~-~~~~-~~~~~~~~~~~~~~~~i------------------~~~~~~~~---~~~~------~~~w~liRpSgTEp  418 (448)
                      ++.+ |+.+ +..+..+... ..+..+                  .+......   ..++      +.+|++||||||||
T Consensus       418 el~~~~G~~~y~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~idG~ki~~~dgw~liRpSGTEP  496 (522)
T cd05801         418 ELTERFGEPYYARIDAPATP-EQKARLKKLSPEQVTATELAGDPILAKLTRAPGNGASIGGLKVTTANGWFAARPSGTED  496 (522)
T ss_pred             HHHHHHCCCCCEEECCCCCH-HHHHHHHHCCHHHCCCCHHCCCCCEEEEECCCCCCCCCCCEEEEECCEEEEEECCCCHH
T ss_conf             99998588753130156898-99999985584325841205854012341155665556877998088589997647261


Q ss_pred             EEEEEEEC-CCHHHHHHHHHHHHHHH
Q ss_conf             79999615-99899999999999998
Q gi|254780544|r  419 LIRIMAEG-DDLSRIKRIVDDLAKVI  443 (448)
Q Consensus       419 ~iriy~Ea-~~~~~~~~l~~~~~~~i  443 (448)
                      +||||+|| .++++++++++++.++|
T Consensus       497 kiRiy~Ea~~~ee~~~~l~~~~~~~v  522 (522)
T cd05801         497 VYKIYAESFLSEEHLKKIQKEAQEIV  522 (522)
T ss_pred             HHEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             01425724889899999999998559


No 13 
>PRK07564 phosphoglucomutase; Validated
Probab=100.00  E-value=0  Score=656.27  Aligned_cols=436  Identities=24%  Similarity=0.328  Sum_probs=350.7

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEC---CCCH
Q ss_conf             0335860155068778899999999999999972379983899966877979999999999997898799962---6780
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILG---PIPS   81 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g---~~pt   81 (448)
                      -|||+||||.++...+|..++..++++++.|++.++..++|+||||+|+.|+.|++.++++|.++|+.|+.++   .+||
T Consensus        41 ~FGT~G~RG~~~~~~~n~~~v~~~tq~la~y~~~~~~~~~vvIg~D~R~~S~~fa~~aa~VlaanGi~v~l~~~~~~~PT  120 (544)
T PRK07564         41 KFGTSGHRGSSLQPSFNENHILAIFQAICEYRGKQGITGPLFVGGDTHALSEPAIQSALEVLAANGVGVVIVGNGGYTPT  120 (544)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             88687567877899833999999999999999835999988998478867999999999999878988999489997887


Q ss_pred             HHHHHHHHHH----CCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--------CC
Q ss_conf             8999999871----99258988654777520125640365456783578999999615664334454332--------22
Q gi|254780544|r   82 PAVAMLTRSL----RADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSI--------GH  149 (448)
Q Consensus        82 P~l~~a~~~~----~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~--------~~  149 (448)
                      |++||+|+++    ++.||||||||||||+|||||+++++|+|.+++.++.||+..++...........+        +.
T Consensus       121 P~lS~aVr~~~~~~~a~~GImITASHNPpeyNGyKv~~~~Ggpa~~~it~~Ie~~~~~i~~~~~~~v~~~~~~~~~~~~~  200 (544)
T PRK07564        121 PAVSHAILKYNRGGGLADGIVITPSHNPPEDGGIKYNPPNGGPADEDVTDAIEARANALLAYGLKGVKRIDLDRALGSMT  200 (544)
T ss_pred             CHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCC
T ss_conf             29999999853365756218973688996448189767888979889999999999776432446766578778731584


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC--------CC
Q ss_conf             1113542566688776326310-21189669998446654333322212333222222232223--5577--------44
Q gi|254780544|r  150 AKRVDGVHDRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNG--ININ--------LD  218 (448)
Q Consensus       150 ~~~~~~~~~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~--~~~~--------~~  218 (448)
                      +. ..+..+.|++.+++.++.+ ++.+++|||+|||||++..+++++|+++|+++..+++.+|+  .|++        |+
T Consensus       201 v~-~~D~~~~Y~~~l~~~id~~~i~~~~lkIv~dplhGag~~~~~~il~~~g~~v~~v~~~~dp~f~f~~~~~~G~~~Pn  279 (544)
T PRK07564        201 VE-VIDLVADYVEDLENVFDFDAIRKAGLRLGVDPLGGVTGPYWKAIAERYGLDLTVVNAPVDPTFNFMPLDDDGGIRMD  279 (544)
T ss_pred             EE-EECCHHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             58-85658999999987438555325897599826877647889999998199829968878898888768644675899


Q ss_pred             CCCCHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCHHHH
Q ss_conf             221013777642-002343036753155210001332237553311356777765532002--23433322113600444
Q gi|254780544|r  219 CGSTNVLSLQRK-VHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLL--RGNGIVTTVMSNIGLER  295 (448)
Q Consensus       219 ~~~~~~~~l~~~-v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~--~~~~vv~~v~ss~~i~~  295 (448)
                      |++++  .|+.. ..+.++|+|+|+||||||++++++.| +++|+++++++++|+++..+.  .+..|+.|++||.++++
T Consensus       280 P~~~~--ala~~l~~~~~aDlgiA~DpDADR~giv~~~g-~l~~n~~~alL~~yl~~~r~~~~~~~~V~kTivTS~lld~  356 (544)
T PRK07564        280 CSSPY--AMAGLLALKDAFDLAFANDPDGDRHGIVTPGG-LMNPNHYLAVAIAYLFHHRPGWSKGAGVGKTLVSSAMIDR  356 (544)
T ss_pred             CCCHH--HHHHHHHHCCCCCEEEEECCCCCEEEEEECCC-EECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
T ss_conf             98688--99998741358767998658876144763472-2255589999999999736024788727998057189999


Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEE-----CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             32001211111233211011111028970013466236530-----1000144423320246677755888899998656
Q gi|254780544|r  296 FIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILS-----DYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFE  370 (448)
Q Consensus       296 ~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~-----~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~  370 (448)
                      +|+++|+++++|+||||||.+.|.+.++.||||||+|+.|.     .|.++|||++++++++|+++.++++++++++++.
T Consensus       357 iA~~~G~~~~et~tGFK~I~~~m~~~~~~fGgEES~G~~~l~~~g~~~vrDKDGi~aaLl~~Ei~A~~gktl~~~l~~l~  436 (544)
T PRK07564        357 VAAKLGRKLYEVPVGFKWFVNGLDAGSIGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAVTGKSPAEIYQELW  436 (544)
T ss_pred             HHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99984982799146289999887327804631254561421467777688852999999999999987949999999999


Q ss_pred             H-CCC-EEEEEECCCCCCCCHHHHHHHHH-------------------HHHHH---CC------CCCEEEEECCCCCCEE
Q ss_conf             4-230-00000056765115589999987-------------------65543---07------8865999677982279
Q gi|254780544|r  371 E-YPQ-FLRSVSVKDTSILNSSSIVQAIA-------------------DAESE---LR------GIDRLIVRASGTESLI  420 (448)
Q Consensus       371 ~-~~~-~~~~~~~~~~~~~~~~~i~~~~~-------------------~~~~~---~~------~~~w~liRpSgTEp~i  420 (448)
                      + |.. ++..+..+..  ....++++.+.                   +...+   ++      ..+|++||||||||++
T Consensus       437 ~~~G~~~y~r~d~~~~--~~~k~~~~~l~~~~~~~~~laG~~v~~~~~~~~~~~~~~dGlk~~~edGwv~vRpSGTEPki  514 (544)
T PRK07564        437 ARFGRPYYSRHDAEAT--PEQKALLSKLSPEQVSATELAGEPITASLTDAPGNGAAIGGLKVVTENGWFAARPSGTETTY  514 (544)
T ss_pred             HHHCCCCEEECCCCCC--HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCEEEEEECCCCCCEE
T ss_conf             9868772342255567--78999999611134776432784224676047777577784799977989999714877389


Q ss_pred             EEEEEC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf             999615-99899999999999998752
Q gi|254780544|r  421 RIMAEG-DDLSRIKRIVDDLAKVIPMI  446 (448)
Q Consensus       421 riy~Ea-~~~~~~~~l~~~~~~~i~~i  446 (448)
                      |+|+|| .+.+++++++++...++...
T Consensus       515 RiY~Es~~~~~~~~~~~~~~~~~~~~~  541 (544)
T PRK07564        515 KIYAESFEGEEHLKQIQPEAALIVLIA  541 (544)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             999975488899987889899876787


No 14 
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00  E-value=0  Score=643.24  Aligned_cols=416  Identities=25%  Similarity=0.339  Sum_probs=337.0

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf             33586015506877889999999999999997237998389996687797999999999999789879996267808999
Q gi|254780544|r    6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVA   85 (448)
Q Consensus         6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~   85 (448)
                      |||+||||+++  +||++++.++++||+.++.++..+++|+||||+|++|++|+++++++|+++|++|+++|.+|||+++
T Consensus         2 FGT~GiRGi~~--~~t~~~v~~~~~a~a~~l~~~~~~~~VvVG~D~R~~S~~~a~~~a~~l~s~Gi~V~~~g~~pTP~l~   79 (459)
T cd03088           2 FGTSGLRGLVT--DLTDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDAGFRVVDCGAVPTPALA   79 (459)
T ss_pred             CCCCCCCEECC--CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH
T ss_conf             89987075858--8999999999999999999758998699996899787999999999999779979978989858999


Q ss_pred             HHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99987199258988654777520125640365456783578999999615664334454332221113542566688776
Q gi|254780544|r   86 MLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVK  165 (448)
Q Consensus        86 ~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~  165 (448)
                      |+++++++ +||||||||||++|||||||+++| ++.+..+..|+............  ..........+..+.|++.+.
T Consensus        80 ~~v~~~~~-~gImITASHNP~eyNG~K~~~~~G-~i~~~~e~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Yi~~~~  155 (459)
T cd03088          80 LYAMKRGA-PAIMVTGSHIPADRNGLKFYRPDG-EITKADEAAILAALVELPEALFD--PAGALLPPDTDAADAYIARYT  155 (459)
T ss_pred             HHHHHCCC-CEEEEECCCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCHHHHHHHHHHHHH
T ss_conf             99985468-639996578997543899988999-68868899999997420034555--445774001447999999999


Q ss_pred             HCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             326310211896699984466543333222123332222222322235577442-2101377764200234303675315
Q gi|254780544|r  166 RTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDC-GSTNVLSLQRKVHEVRADIGIALDG  244 (448)
Q Consensus       166 ~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~-~~~~~~~l~~~v~~~~ad~Gia~Dg  244 (448)
                      +.++... .+++||++||+||+++.+++++|+.+||+++.++..+++...+++| .++++..+.+.+++.++|+|++|||
T Consensus       156 ~~~~~~~-~~~~~i~vd~~~g~g~~~~~~il~~lG~~vi~l~~~~~f~p~~~e~~~~e~~~~~~~~v~~~~aD~giA~Dg  234 (459)
T cd03088         156 DFFGAGA-LKGLRIGVYQHSSVGRDLLVRILEALGAEVVPLGRSDTFIPVDTEAVRPEDRALAAAWAAEHGLDAIVSTDG  234 (459)
T ss_pred             HHCCHHH-HCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8557366-459889997788505778899999749889995788999998999999679999999998548876886458


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC----
Q ss_conf             5210001332237553311356777765532002234333221136004443200121111123321101111102----
Q gi|254780544|r  245 DGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN----  320 (448)
Q Consensus       245 D~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~----  320 (448)
                      ||||++++|++|++++||++++|+++++.      ...|+.++.||.+++.  ...+.++++|+|||+|+.++|++    
T Consensus       235 DaDR~~vvD~~G~~l~gd~l~~L~a~~l~------~~~vv~~v~s~~~~~~--~~~~~~v~~T~vG~~~i~~~m~~~~~~  306 (459)
T cd03088         235 DGDRPLVADETGEWLRGDILGLLTARFLG------ADTVVTPVSSNSAIEL--SGFFKRVVRTRIGSPYVIAAMAEAAAA  306 (459)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHC------CCEEEEEEECHHHHHH--HCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             87602013799888373999999999865------9916965741199997--178982699636679999999997632


Q ss_pred             -CCCEECCCCCCEEEEECCCC----------CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             -89700134662365301000----------1444233202466777558888999986564230000000567651155
Q gi|254780544|r  321 -NGFNVGGEQSGHIILSDYGS----------TGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNS  389 (448)
Q Consensus       321 -~~~~~g~E~sg~~~~~~~~~----------~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~  389 (448)
                       .++++|+|+||||+++.+..          ++||+++++.+|+++++++++|+++++++|++..+...+  .+.+....
T Consensus       307 ~~~~~~G~E~sgg~~~~~~~~~~~~~~~al~~rD~~~~~l~~l~~~~~~~~~l~~l~~~l~~~~~~~~~~--~~~p~~~~  384 (459)
T cd03088         307 GAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVLAAAKEAGIPLSELVASLPARFTASDRL--QNFPTEKS  384 (459)
T ss_pred             CCCEEEEEEEECCEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH--HCCCHHHH
T ss_conf             5682899997486998982314862220301134799999999999876998999998700223645776--32867789


Q ss_pred             HHHHHHHHHHH-----------------HH-------CCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf             89999987655-----------------43-------078865999677982279999615998999999999
Q gi|254780544|r  390 SSIVQAIADAE-----------------SE-------LRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDD  438 (448)
Q Consensus       390 ~~i~~~~~~~~-----------------~~-------~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~  438 (448)
                      ..+++.+.+..                 ..       +++.+|++||||||||+||||+||+|++.+++|++.
T Consensus       385 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~DG~k~~~~dg~~l~iRpSgTEP~iriy~Ea~t~e~~~~ll~~  457 (459)
T cd03088         385 QALIARLSADPEARAAFFFALGGEVASIDTTDGLRMTFANGDIVHLRPSGNAPELRCYVEADSEERARELLAR  457 (459)
T ss_pred             HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECCHHHHHHHHHC
T ss_conf             9999997506777754444202420320266628999469809999757993889999973999999999866


No 15 
>PTZ00150 phosphoglucomutase; Provisional
Probab=100.00  E-value=0  Score=611.96  Aligned_cols=439  Identities=20%  Similarity=0.271  Sum_probs=337.2

Q ss_pred             CCC-CCCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHHCC-----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf             520-3358601550--6877889999999999999997237-----9983899966877979999999999997898799
Q gi|254780544|r    3 RRF-FGTDGIRGKS--NTFPITPNFMMRIGIAVGYLFRGKK-----KHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAF   74 (448)
Q Consensus         3 r~l-FGt~GiRG~~--~~~~~t~~~v~~i~~a~~~~~~~~~-----~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~   74 (448)
                      ++| |||+|+||..  +...||...+.+.++++|.|+....     ..+.||||||+|+.|+.|++.+|.+|.++|+.|+
T Consensus        47 ~~L~FGTaGlRg~mg~G~nrmN~~tv~~atqGla~yl~~~~~~~~~~~~gVVIgyD~R~~S~~FA~~~A~Vla~~Gi~v~  126 (593)
T PTZ00150         47 KRLNFGTAGLRGKMCVGFNAMNVVTIMQTTQGLCSYLINTYGINLCKNRGIIFGFDGRYHSESFAHVAASVCLSKGFRVY  126 (593)
T ss_pred             CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             88876184111775888750128999999999999999866853246788899627986849999999999997898899


Q ss_pred             EEC-CCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC------C
Q ss_conf             962-678089999998719925898865477752012564036545678357899999961566433445433------2
Q gi|254780544|r   75 ILG-PIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDS------I  147 (448)
Q Consensus        75 ~~g-~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~------~  147 (448)
                      .+. .+|||+++|++++++|+|||||||||||++|||+|+|+++|+++.++..++|...+.+.........+.      +
T Consensus       127 l~~~~~PTP~lsfaVr~l~a~~GImITASHNP~~yNGyKvY~~~G~Qi~pp~d~~I~~~i~~~~~~~~~~~~~~~~~~~~  206 (593)
T PTZ00150        127 LFAQTVATPILCYSNFKKNCLCGVMVTASHNPKLDNGYKVYAANGAQIIPPVDKNISDCILNNLEPWKDAYDYLNEDFYL  206 (593)
T ss_pred             EECCCCCCCCCHHHHHCCCCCEEEEEECCCCCHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHC
T ss_conf             91899987520188861388658999727898456788874589862587677999999986367403444312302202


Q ss_pred             CCCCCC----CCHHHHHHHHHHHCCCCH---HHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCCC--CCCCCCCCCCC
Q ss_conf             221113----542566688776326310---211896699984466543333222123332-22222--23222355774
Q gi|254780544|r  148 GHAKRV----DGVHDRYIEHVKRTLPRD---VTLQGLRIVVDCANGASYKVAPEVFWELGA-DVVVI--GDKPNGININL  217 (448)
Q Consensus       148 ~~~~~~----~~~~~~Yi~~l~~~~~~~---~~~~~lkvvvD~~~G~~~~~~~~il~~lg~-~~~~i--~~~pd~~~~~~  217 (448)
                      .....+    .+..+.|++.+++.++..   ....+++||+|+|||++..+++++|+.+|+ +++.+  ++.|||.||+.
T Consensus       207 ~~~~li~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lkivytpmHGtG~~~v~~~l~~~G~~~~~~V~eQ~~pD~~Fptv  286 (593)
T PTZ00150        207 KDTSLVEDIYFEMYDSFMDDLKHEFNFNCHRNSRTKLAIVYSPMHGIGRKFVQGIMHIVGFNNLLTVPQQALPDADFSTV  286 (593)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf             65421333369999999999987607213331478964997899887587999999981999608952456689999999


Q ss_pred             C-CCCCH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCCC
Q ss_conf             4-22101---377764200234303675315521000133---22375533113567777655320022-----343332
Q gi|254780544|r  218 D-CGSTN---VLSLQRKVHEVRADIGIALDGDGDRVIIVD---EKGAIVNGDQIMALIAREWMSHSLLR-----GNGIVT  285 (448)
Q Consensus       218 ~-~~~~~---~~~l~~~v~~~~ad~Gia~DgD~DR~~ivd---~~G~~i~~d~~~~lla~~ll~~~~~~-----~~~vv~  285 (448)
                      . |+|+.   +....+.+++.++|+++|+||||||+++++   +.+++++||++++|+++|++.....+     +..++.
T Consensus       287 ~~PNPEe~~al~la~~~a~~~~adliiAtDPDADRlgva~~~~~~~~~ltGNe~g~Ll~~~ll~~~~~~~~~~~~~~vv~  366 (593)
T PTZ00150        287 SFPNPEEKGALDMSMELADKVCSPIVVANDPDADRFACAEKFNNKWKIFSGDELGIIFAYHLMKQNEKKNIDKSKHVFIC  366 (593)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             99998744578999999886489999950898772688886389637778119999999999998886489877867999


Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC-----CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHH---H
Q ss_conf             21136004443200121111123321101111102-----897001346623653010001444233202466777---5
Q gi|254780544|r  286 TVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN-----NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIK---Q  357 (448)
Q Consensus       286 ~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~-----~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~---~  357 (448)
                      |++||.+++++|+++|+++++|+||||||.+++.+     ..++||||||+|+++++|.++|||+.++++++|+.+   .
T Consensus       367 TiVSS~ll~~IA~~~G~~~~etlTGFK~Ig~~~~~~~~~~~~~lfG~EES~Gyl~~~~vrDKDGi~Aa~l~~Emaa~~~~  446 (593)
T PTZ00150        367 TVVCSRMLKKLCEKYGYKYDETLTGFKWIINKAIDLNEENYTILYCYEEALGHALTKHVKDKCGISALAYWIEIAVYLYE  446 (593)
T ss_pred             EEECHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98441789999998299447458771578888987640585078641101566158878884389999999999999997


Q ss_pred             CCCCHHHHHHH-HHHCCCEEEE---EECCCCCCCCHHHHHHHHHHH---H------------------------------
Q ss_conf             58888999986-5642300000---005676511558999998765---5------------------------------
Q gi|254780544|r  358 YDKPVSTICHC-FEEYPQFLRS---VSVKDTSILNSSSIVQAIADA---E------------------------------  400 (448)
Q Consensus       358 ~~~~l~~l~~~-l~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~---~------------------------------  400 (448)
                      ++++|.+.+++ +.+|+.+..+   ..+.+.  .....+++.+...   +                              
T Consensus       447 ~g~tL~d~L~eiy~~yGy~~~~~~~~~~~~~--~~i~~i~~~~r~~~~~~~~i~~~~V~~v~D~~~g~~~~~~d~~~~~~  524 (593)
T PTZ00150        447 NGLTFHEYLENIREEIGYFVNNNGYYIVLDP--NDIVSIFNDFRGNGLYKSELGSYKIIHIRDLTTGYDSTTADGKSLIA  524 (593)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEEECCH--HHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEECC
T ss_conf             3999999999999983973325345872798--99999999986189986301674578998444564444789855126


Q ss_pred             ---------HHCCCCCEEEEECCCCCCEEEEEEEC--CCHHHHHHHHHHHHHHH
Q ss_conf             ---------43078865999677982279999615--99899999999999998
Q gi|254780544|r  401 ---------SELRGIDRLIVRASGTESLIRIMAEG--DDLSRIKRIVDDLAKVI  443 (448)
Q Consensus       401 ---------~~~~~~~w~liRpSgTEp~iriy~Ea--~~~~~~~~l~~~~~~~i  443 (448)
                               -.+++.+|+.||||||||+||+|+|.  .+.+.+++.++++.+.|
T Consensus       525 ~~p~s~~l~~~ledgs~i~iRpSGTEPKiK~Y~e~~~~~~~~a~~~l~~~~~~i  578 (593)
T PTZ00150        525 PTPDSQNITIHFENTAILTIRASGTEPKVKWYAEISRDSYEQAKEEIDQLIDEV  578 (593)
T ss_pred             CCCCCCEEEEEECCCEEEEEECCCCHHHEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             899555699998399799998678526079999985497999999999999999


No 16 
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00  E-value=0  Score=617.01  Aligned_cols=351  Identities=34%  Similarity=0.570  Sum_probs=317.2

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV   84 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l   84 (448)
                      ||||+||||.+|. ++||+.+.++|.+++.                                                  
T Consensus         1 ~Fg~~Gir~~~~~-~~tP~~a~~~~~~~g~--------------------------------------------------   29 (355)
T cd03084           1 IFGTSGVRGVVGD-DITPETAVALGQAIGS--------------------------------------------------   29 (355)
T ss_pred             CCCCCCEEEEECC-CCCCHHHHHHHHHHCC--------------------------------------------------
T ss_conf             9687886688579-9885999999999789--------------------------------------------------


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r   85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV  164 (448)
Q Consensus        85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l  164 (448)
                               .|||||||||||++||||||++++|.++.++.+++||+.+++........ ...+......++.+.|++++
T Consensus        30 ---------~gGImITASHNP~~yNGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~-~~~~~~~~~~d~~~~Y~~~l   99 (355)
T cd03084          30 ---------TGGIMITASHNPPEDNGIKFVDPDGEPIASEEEKAIEDLAEKEDEPSAVA-YELGGSVKAVDILQRYFEAL   99 (355)
T ss_pred             ---------CEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEECCHHHHHHHHH
T ss_conf             ---------86999972899930657999859998897499999999970554445663-23487365144699999999


Q ss_pred             HHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC-CCHHHHHHHHHCCCCCCEEE
Q ss_conf             6326310-2118966999844665433332221233322222223222355774--422-10137776420023430367
Q gi|254780544|r  165 KRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININL--DCG-STNVLSLQRKVHEVRADIGI  240 (448)
Q Consensus       165 ~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~--~~~-~~~~~~l~~~v~~~~ad~Gi  240 (448)
                      .+.++.+ ++.+++|||+||+||+++.+++++|+++||+++.+|++||+.||+.  +|. ++++..+.+.+++.++|+|+
T Consensus       100 ~~~~~~~~i~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~v~~ln~~~dg~f~~~~p~p~~~~~l~~l~~~v~~~~adlGi  179 (355)
T cd03084         100 KKLFDVAALSNKKFKVVVDSVNGVGGPIAPQLLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAEKADFGV  179 (355)
T ss_pred             HHHCCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             87669756505797899989998551015999997298499952115888776789988743799999997522887899


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             53155210001332237553311356777765532002234333221136004443200121111123321101111102
Q gi|254780544|r  241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN  320 (448)
Q Consensus       241 a~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~  320 (448)
                      +|||||||++++|++|++++||++++|++++++++.. ++..||.|+.||.+++++++++|++++||+||||||.++|.+
T Consensus       180 a~DgDaDR~~~vd~~G~~i~gd~~~~lla~~l~~~~~-~~~~VV~tv~ts~~i~~~~~~~g~~~~~t~vG~k~i~~~m~~  258 (355)
T cd03084         180 AFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFN-PRGGVVKTVVSSGALDKVAKKLGIKVIRTKTGFKWVGEAMQE  258 (355)
T ss_pred             EECCCCCEEEEECCCCEEECCCHHHHHHHHHHHHHCC-CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
T ss_conf             9659987799994897278844899999999997248-898289710153167999998334544456676999987650


Q ss_pred             CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             89700134662365301000144423320246677755888899998656423000000056765115589999987655
Q gi|254780544|r  321 NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAE  400 (448)
Q Consensus       321 ~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  400 (448)
                      .++.+|||+|||++|++|.+++||+++++++|+++++++++++++++++|++++...++                     
T Consensus       259 ~~~~~ggE~SGh~~~~~~~~~~Dgi~a~l~~le~la~~~~~lsel~~~l~~~~~~~~~~---------------------  317 (355)
T cd03084         259 GDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGKSLSELFSELPRYYYIRLKV---------------------  317 (355)
T ss_pred             CCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEECC---------------------
T ss_conf             68289972658875266586885999999999999985959999998534525121258---------------------


Q ss_pred             HHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             4307886599967798227999961599899999999999998
Q gi|254780544|r  401 SELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI  443 (448)
Q Consensus       401 ~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i  443 (448)
                           .+|++||||||||++|||+||++++.+++++++++++|
T Consensus       318 -----~~w~lvRpSgTEP~iRvy~Ea~~~~~~~~l~~~~~elv  355 (355)
T cd03084         318 -----RGWVLVRASGTEPAIRIYAEADTQEDVEQIKKEARELV  355 (355)
T ss_pred             -----CEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             -----63999961499838999996599999999999998369


No 17 
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00  E-value=0  Score=608.33  Aligned_cols=423  Identities=26%  Similarity=0.324  Sum_probs=330.4

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEC---CCC
Q ss_conf             033586015506877889999999999999997237-9983899966877979999999999997898799962---678
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKK-KHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILG---PIP   80 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~-~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g---~~p   80 (448)
                      =|||+||||.++++ ..+..+.+++++++++++.+. .+++|+||||+|+.|+.|++.++++|.++|++|+.++   .+|
T Consensus        12 kfGTsGlRg~~~~f-~~~~~l~~~~Qai~~~~~~~~~~g~~vvIGyD~R~~S~~fA~~~A~VlaanGi~v~l~~~~~~~P   90 (548)
T cd03085          12 KPGTSGLRKKVKVF-QQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRYYNKEAIQIIIKIAAANGVGKVVVGQNGLLS   90 (548)
T ss_pred             CCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             99760127744234-67326999999999887751677985999857886789999999999987899799958998377


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCC---CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC---C--CCCCCCCC--
Q ss_conf             0899999987199258988654777---520125640365456783578999999615664334---4--54332221--
Q gi|254780544|r   81 SPAVAMLTRSLRADVGVMISASHNP---YQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYL---S--CYDSIGHA--  150 (448)
Q Consensus        81 tP~l~~a~~~~~~~gGI~iTaSHNP---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~---~--~~~~~~~~--  150 (448)
                      ||+++|++++++|++||||||||||   .+|||+|+++++|+|.+++.+++|++..+.......   .  ..+..+..  
T Consensus        91 TP~lSfaVr~l~a~aGImITASHNP~~p~~dnGyKv~~~~Ggpa~~~it~~I~~~~~~i~~~~~~~~~~~d~~~~g~~~~  170 (548)
T cd03085          91 TPAVSAVIRKRKATGGIILTASHNPGGPEGDFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVDLSKIGVTKF  170 (548)
T ss_pred             CCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEEE
T ss_conf             85889999971887359982678989888877579836889969768899999998644554215655689466162331


Q ss_pred             ------CCCCCHHHHHHHHHHHCCCCHHH-----CCCCEEEEEECCCCCCCCCCCCC-CCCCCCC-CCCCCCCCCCCC--
Q ss_conf             ------11354256668877632631021-----18966999844665433332221-2333222-222232223557--
Q gi|254780544|r  151 ------KRVDGVHDRYIEHVKRTLPRDVT-----LQGLRIVVDCANGASYKVAPEVF-WELGADV-VVIGDKPNGINI--  215 (448)
Q Consensus       151 ------~~~~~~~~~Yi~~l~~~~~~~~~-----~~~lkvvvD~~~G~~~~~~~~il-~~lg~~~-~~i~~~pd~~~~--  215 (448)
                            ...-+..+.|++.+++.++.+..     .++||||+|+|||+++.++.++| +.+|+.. ..+|++||+.|+  
T Consensus       171 ~~~~~~ve~iD~~~~Yi~~l~~~~D~~~I~~~~~~~~lkivydpmhGvg~~~~~~il~~~lG~~~~~vv~~~pdPdF~g~  250 (548)
T cd03085         171 GGKPFTVEVIDSVEDYVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPESSVVNCTPLPDFGGG  250 (548)
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf             36763389846589999999874489988643247897599836867630679999999709994268778307988998


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-C-CC-CCCCCCCCCCCH
Q ss_conf             74422101377764200234303675315521000133223755331135677776553200-2-23-433322113600
Q gi|254780544|r  216 NLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSL-L-RG-NGIVTTVMSNIG  292 (448)
Q Consensus       216 ~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~-~-~~-~~vv~~v~ss~~  292 (448)
                      +|+|+++++..|.+.+++.++|+|+|+||||||++++ ++|.+++|++.+++++.|++.... . ++ ..|+.|++||.+
T Consensus       251 ~P~P~~~~a~~L~~~~~~~~aDlgiA~DpDADR~~I~-g~g~~v~~~~~lall~~~~~~~~~~~~~g~~~v~kTivTS~m  329 (548)
T cd03085         251 HPDPNLTYAKDLVELMKSGEPDFGAASDGDGDRNMIL-GKGFFVTPSDSVAVIAANAKLIPYFYKGGLKGVARSMPTSGA  329 (548)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEC-CCCCEECCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCHHH
T ss_conf             9698768999999997267987899728710465573-488365886279999999996613453587327886121789


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHH-HH
Q ss_conf             44432001211111233211011111028970013466236530100014442332024667775588889999865-64
Q gi|254780544|r  293 LERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCF-EE  371 (448)
Q Consensus       293 i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l-~~  371 (448)
                      ++++|+.+|.++++|+||||||.+.|.+.++.||||||+|+ .++|.++|||++++++++++++.+++++.++++++ .+
T Consensus       330 ld~IA~~~G~~~~ETltGFKwig~~m~~~~~~~ggEES~G~-~~~~vrDKDGI~A~l~~~e~~A~~Gktl~d~l~~l~~~  408 (548)
T cd03085         330 LDRVAKKLGIPLFETPTGWKFFGNLMDAGKLSLCGEESFGT-GSDHIREKDGLWAVLAWLSILAHRNVSVEDIVKEHWQK  408 (548)
T ss_pred             HHHHHHHCCCCEEECCCCEEEEEECCCCCCEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999981994598487306630010367513520124564-68876685189999999999998399999999999999


Q ss_pred             CCCE-EEEEECCCCCCCCHHHHHHHHHHHH---------------------------------------HHCCCCCEEEE
Q ss_conf             2300-0000056765115589999987655---------------------------------------43078865999
Q gi|254780544|r  372 YPQF-LRSVSVKDTSILNSSSIVQAIADAE---------------------------------------SELRGIDRLIV  411 (448)
Q Consensus       372 ~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~---------------------------------------~~~~~~~w~li  411 (448)
                      |... +.....+........++++.+....                                       -.+++.+|++|
T Consensus       409 yG~~~y~r~d~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~v~~~~d~~~~d~~d~~~~~~~glk~~ledGs~~~v  488 (548)
T cd03085         409 YGRNFYTRYDYEEVDSEAANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYTDPVDGSVSKKQGLRIIFEDGSRIIF  488 (548)
T ss_pred             HCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
T ss_conf             67663001030137878999999999864313356765455755999704655468777865668869999729859999


Q ss_pred             ECCCCCCE---EEEEEEC--CCHH
Q ss_conf             67798227---9999615--9989
Q gi|254780544|r  412 RASGTESL---IRIMAEG--DDLS  430 (448)
Q Consensus       412 RpSgTEp~---iriy~Ea--~~~~  430 (448)
                      |||||||+   +|+|+|+  +|++
T Consensus       489 RPSGTEPk~~~lK~Y~E~~~~d~~  512 (548)
T cd03085         489 RLSGTGSSGATIRLYIESYEKDPS  512 (548)
T ss_pred             ECCCCCCCCCCEEEEEEEECCCHH
T ss_conf             778888889738999999558825


No 18 
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852    Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose .     Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=100.00  E-value=0  Score=538.75  Aligned_cols=445  Identities=21%  Similarity=0.285  Sum_probs=381.2

Q ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE-----
Q ss_conf             652033586015506877889999999999999997237998389996687797999999999999789879996-----
Q gi|254780544|r    2 KRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL-----   76 (448)
Q Consensus         2 ~r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~-----   76 (448)
                      |+.-|||+|+||......||+.|+..|++|++.+.+.++..+++.||+|++..|+....++.++|.+|||+|+.-     
T Consensus        38 ~~V~FGTSGHRGsA~~~tFNE~HILAi~QAv~~~R~~~G~TGP~y~G~DtHaLSEPA~~s~LEVLaAN~v~~~v~tat~~  117 (553)
T TIGR01132        38 QKVEFGTSGHRGSALKGTFNEAHILAITQAVVDYRAAQGITGPLYIGKDTHALSEPAFVSALEVLAANQVEVIVQTATEN  117 (553)
T ss_pred             HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf             42035788765345778766478999999999999727820351116775425406899999998746725888402247


Q ss_pred             -CCCCHHHHHHHHHHHC------CCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             -2678089999998719------925898865477752012564036545678357899999961566433445433222
Q gi|254780544|r   77 -GPIPSPAVAMLTRSLR------ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGH  149 (448)
Q Consensus        77 -g~~ptP~l~~a~~~~~------~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~  149 (448)
                       +.+|||.+||||..++      ..-||+||.|||||++.|||++.|+|+|..++.++.|++..++.....++..+++..
T Consensus       118 ~ryTPTPavS~AILtyN~G~~~~lADGIviTPSHNPP~DGGiKYNPP~GGPA~~~~T~~i~~RAN~~l~~~~~~VKRl~~  197 (553)
T TIGR01132       118 NRYTPTPAVSHAILTYNKGRKEALADGIVITPSHNPPEDGGIKYNPPNGGPADTEATQAIEDRANELLKAGLKGVKRLPL  197 (553)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             88889646657887412678877656147758777478867640774458886688899999999999722375232328


Q ss_pred             -------CCCCCCHHHHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
Q ss_conf             -------1113542566688776326310-2118966999844665433332221233322222223222355-------
Q gi|254780544|r  150 -------AKRVDGVHDRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGIN-------  214 (448)
Q Consensus       150 -------~~~~~~~~~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~-------  214 (448)
                             .....|+...|++.|.+.+|.. |+..+||+-|||+.|++..||.+|-++.++++..+|+.-|+.|       
T Consensus       198 ~~A~~s~~~~~~D~v~pYV~~L~~vvD~aaI~~Agl~lGvDPLGGa~v~YW~~Ia~~y~L~lt~Vn~~vD~tf~FM~LD~  277 (553)
T TIGR01132       198 ARALKSETVKEHDLVKPYVDDLADVVDLAAIRKAGLRLGVDPLGGAGVDYWKEIAEKYNLDLTLVNPAVDPTFRFMTLDK  277 (553)
T ss_pred             HHHHHHHHHHHHCCCCCHHHCCCCEEEHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf             99986545554303322110111124066786589777234677787367899998757864765544264100244468


Q ss_pred             ---CCCCCCCCH-HHHHHH--HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCC
Q ss_conf             ---774422101-377764--2002343036753155210001332237553311356777765532002234--33322
Q gi|254780544|r  215 ---INLDCGSTN-VLSLQR--KVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGN--GIVTT  286 (448)
Q Consensus       215 ---~~~~~~~~~-~~~l~~--~v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~--~vv~~  286 (448)
                         ++++|.+++ +..|.+  .-.+.++|+.+..|+|+||++|||.+-.+++||+++++..+||-+++.++..  .|-+|
T Consensus       278 DG~IRMDCSSp~AMAgL~~t~fG~~d~YdlAfgND~D~DRHGIVTP~~GLmNPNHyLaVaI~YLy~hR~~W~~~~AvGKT  357 (553)
T TIGR01132       278 DGKIRMDCSSPYAMAGLLATMFGLKDKYDLAFGNDPDYDRHGIVTPDEGLMNPNHYLAVAIEYLYSHRQQWSGDVAVGKT  357 (553)
T ss_pred             CCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf             88774446877799999998720553100101577887767304488778884179999999998507775455000202


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEEC-----CCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             113600444320012111112332110111110289700134662365301-----000144423320246677755888
Q gi|254780544|r  287 VMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSD-----YGSTGDGLVAALQVLRYIKQYDKP  361 (448)
Q Consensus       287 v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~l~~le~l~~~~~~  361 (448)
                      ++||.+||++....|.+++|+|||||||.+-+....+.||||||.|..|-.     |..+|||++.+||..|+++.+|++
T Consensus       358 lVSSsmIDrVva~lgR~l~EVPVGFKWFVdGL~~g~fGFGGEESAGASFLr~dGt~W~TDKDGiIm~LLAAEItAvTGk~  437 (553)
T TIGR01132       358 LVSSSMIDRVVADLGRQLVEVPVGFKWFVDGLLDGSFGFGGEESAGASFLRKDGTVWTTDKDGIIMCLLAAEITAVTGKN  437 (553)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             13345676664135887888627503433011047557674012200323047580244640799999998898651788


Q ss_pred             HHHHHHHHHH-CCC-EEEEEEC-----------------CCCCCCCHHHHHHHHHHHHHHCC---------CCCEEEEEC
Q ss_conf             8999986564-230-0000005-----------------67651155899999876554307---------886599967
Q gi|254780544|r  362 VSTICHCFEE-YPQ-FLRSVSV-----------------KDTSILNSSSIVQAIADAESELR---------GIDRLIVRA  413 (448)
Q Consensus       362 l~~l~~~l~~-~~~-~~~~~~~-----------------~~~~~~~~~~i~~~~~~~~~~~~---------~~~w~liRp  413 (448)
                      .++-.++|-. |.. ++..+.-                 .-...+..+.|-.++...+++-.         ..+||.-||
T Consensus       438 P~~~Y~~La~~~G~p~Y~Ri~A~A~~~QK~~L~kLSpd~VsA~~LAGdaITAkLT~APGNgAaiGGLKVtT~~gWFAARP  517 (553)
T TIGR01132       438 PQQHYDELAAKYGDPIYARIDAPATSAQKARLKKLSPDMVSATTLAGDAITAKLTKAPGNGAAIGGLKVTTANGWFAARP  517 (553)
T ss_pred             HHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCCCEEECCCCCEECCC
T ss_conf             75789999998388300010245897789998415800002545248625786326787530006520012455220378


Q ss_pred             CCCCCEEEEEEEC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf             7982279999615-99899999999999998752
Q gi|254780544|r  414 SGTESLIRIMAEG-DDLSRIKRIVDDLAKVIPMI  446 (448)
Q Consensus       414 SgTEp~iriy~Ea-~~~~~~~~l~~~~~~~i~~i  446 (448)
                      ||||.+.|||+|| +++++++++.++..++|+++
T Consensus       518 SGTEdvYKIYaESF~g~~Hl~~i~~eA~~iV~~v  551 (553)
T TIGR01132       518 SGTEDVYKIYAESFKGEEHLKQIEKEAEEIVDEV  551 (553)
T ss_pred             CCCCCCHHHECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8861310000004588889999999999999985


No 19 
>KOG1220 consensus
Probab=100.00  E-value=0  Score=508.62  Aligned_cols=426  Identities=22%  Similarity=0.294  Sum_probs=338.2

Q ss_pred             CCCCC-CCCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHHCCCC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             96520-3358601550--687788999999999999999723799--838999668779799999999999978987999
Q gi|254780544|r    1 MKRRF-FGTDGIRGKS--NTFPITPNFMMRIGIAVGYLFRGKKKH--RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFI   75 (448)
Q Consensus         1 m~r~l-FGt~GiRG~~--~~~~~t~~~v~~i~~a~~~~~~~~~~~--~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~   75 (448)
                      |-.++ |||.|+||..  +...+|+..+.++++.++.+++++...  ..|+||||.|++|+.|+++++.+|..+|+.|++
T Consensus        56 ~d~Ri~fgt~GlRg~m~agf~~mnel~~iq~~qg~a~yl~~~~~~~~~giviG~D~R~~S~~fA~l~a~vf~~~g~~v~l  135 (607)
T KOG1220          56 LDTRIKFGTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELVAAVFLLNGFKVYL  135 (607)
T ss_pred             CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             03010243243324433575036689999987899999997477655238982377633277999999999767965998


Q ss_pred             EC-CCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCC
Q ss_conf             62-678089999998719925898865477752012564036545678357899999961566433445433--222111
Q gi|254780544|r   76 LG-PIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDS--IGHAKR  152 (448)
Q Consensus        76 ~g-~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~--~~~~~~  152 (448)
                      ++ .+|||++.|++.+++|++||||||||||.+|||+|+|+.+|++|.+.+.++|...++....++.+.|+.  +.....
T Consensus       136 f~~~v~TP~vpfav~~l~~dAgIMiTASHnPk~dNGyKvYwsNG~qii~PhD~~I~~~~~~nl~p~~s~wd~slv~s~~l  215 (607)
T KOG1220         136 FSELVPTPFVPFAVLTLGADAGIMITASHNPKEDNGYKVYWSNGAQIISPHDEKISDSIEANLEPRLSSWDDSLVKSHPL  215 (607)
T ss_pred             ECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHH
T ss_conf             43545787416678774567148995267852217878994587605480237799999844676642002667753523


Q ss_pred             CC----CHHHHHHHHHHHCCCCH----HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC-CCCC
Q ss_conf             35----42566688776326310----21189669998446654333322212333222---2222322235577-4422
Q gi|254780544|r  153 VD----GVHDRYIEHVKRTLPRD----VTLQGLRIVVDCANGASYKVAPEVFWELGADV---VVIGDKPNGININ-LDCG  220 (448)
Q Consensus       153 ~~----~~~~~Yi~~l~~~~~~~----~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~---~~i~~~pd~~~~~-~~~~  220 (448)
                      .+    ...+.|.+.+++.++.-    .-..++++|++++||+++.+..++|+.+|+..   +....+|||.||+ +-|+
T Consensus       216 ~~d~~~~~~~~~~e~~k~~l~~~~~e~n~~s~~~fVyta~hGvG~~F~~~al~~~~~~~~~~v~eq~~Pdp~FPt~~~PN  295 (607)
T KOG1220         216 LHDILAVIIPPYFEVYKELLPCFHREANPLSGLKFVYTAGHGVGGFFVKKALEKLGLDTMISVPEQLEPDPMFPTVPFPN  295 (607)
T ss_pred             HCCCHHCCCHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf             21840013667899998507507666345788518994687765788999999808985200403217999998889989


Q ss_pred             CCHHHHHH---HHHCCCCCCEEEEECCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCC
Q ss_conf             10137776---42002343036753155210001332---2375533113567777655320022343----33221136
Q gi|254780544|r  221 STNVLSLQ---RKVHEVRADIGIALDGDGDRVIIVDE---KGAIVNGDQIMALIAREWMSHSLLRGNG----IVTTVMSN  290 (448)
Q Consensus       221 ~~~~~~l~---~~v~~~~ad~Gia~DgD~DR~~ivd~---~G~~i~~d~~~~lla~~ll~~~~~~~~~----vv~~v~ss  290 (448)
                      |++...|.   +.+.++++|+++++|||+||+++++.   +|+.++||+++||++++.+++++.+...    +..+.+||
T Consensus       296 PEek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek~~G~wr~fnGNElgALl~~~~le~~k~~~~~~~~~ml~s~vSs  375 (607)
T KOG1220         296 PEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEHKGSTPVQDVSMLNSTVSS  375 (607)
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHEECCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             32177999999987504884899508974234520135785035163289999999999866688853103556668788


Q ss_pred             CHHHHHHHCCCCCCCCCCCCCCCHHHHHH---C-CC-CEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHC----CCC
Q ss_conf             00444320012111112332110111110---2-89-700134662365301000144423320246677755----888
Q gi|254780544|r  291 IGLERFIAGLGLSLKRTEVGDRYIMEYMK---N-NG-FNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQY----DKP  361 (448)
Q Consensus       291 ~~i~~~a~~~g~~v~~t~vG~k~i~~~~~---~-~~-~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~----~~~  361 (448)
                      .++..+|+..|+++.+|.|||||+.++..   + +. ..|++|+|+|++|+.+..++||+++++++++++++.    +.+
T Consensus       376 ~l~~~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a~~~~~lr~~~~~s  455 (607)
T KOG1220         376 GLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFASMACRLRLAGNLS  455 (607)
T ss_pred             HHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999998738333321445316667889988437644666132227544667527630889999999999998714887


Q ss_pred             HHH-HHHHHHHCCCEEEEEE---CCCC-CCCCHHHHHHHHHHH---HH----H---------------------------
Q ss_conf             899-9986564230000000---5676-511558999998765---54----3---------------------------
Q gi|254780544|r  362 VST-ICHCFEEYPQFLRSVS---VKDT-SILNSSSIVQAIADA---ES----E---------------------------  402 (448)
Q Consensus       362 l~~-l~~~l~~~~~~~~~~~---~~~~-~~~~~~~i~~~~~~~---~~----~---------------------------  402 (448)
                      +++ |.+.+++|........   |.++ ......+-++.+...   ++    +                           
T Consensus       456 l~e~l~~l~e~yg~~~~~~~y~l~~~pe~~~~lf~~lR~~~~~~~yp~~ig~e~ev~~~rdlT~g~d~s~~d~ka~lpv~  535 (607)
T KOG1220         456 LSEVLEDLYERYGYHSTANSYRLCIDPEVIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRDLTTGYDVSSPDHKAVLPVS  535 (607)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEEECEEEEECCCCCCCCCCCCC
T ss_conf             88999999986176402247897069950578998876334445664011231014554303235524888886335435


Q ss_pred             ---------CCCCCEEEEECCCCCCEEEEEEEC
Q ss_conf             ---------078865999677982279999615
Q gi|254780544|r  403 ---------LRGIDRLIVRASGTESLIRIMAEG  426 (448)
Q Consensus       403 ---------~~~~~w~liRpSgTEp~iriy~Ea  426 (448)
                               ..+..|+.+|-|+|||++++|+|+
T Consensus       536 ~ss~~vTf~~~~~~~~tlR~SgtePkik~yie~  568 (607)
T KOG1220         536 TSSQMVTFTFNNGGVVTLRTSGTEPKIKLYIEA  568 (607)
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCCCHHHHHHH
T ss_conf             411236775157679998548888641201976


No 20 
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00  E-value=0  Score=459.17  Aligned_cols=349  Identities=25%  Similarity=0.368  Sum_probs=264.4

Q ss_pred             CEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC-----------CCC-------CCCCC----
Q ss_conf             25898865477752012564036545678357899999961566433445-----------433-------22211----
Q gi|254780544|r   94 DVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSC-----------YDS-------IGHAK----  151 (448)
Q Consensus        94 ~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~-----------~~~-------~~~~~----  151 (448)
                      .-||||||||||++||||||++++|..++++.++.||++++.........           .+.       +|+-+    
T Consensus        36 ~~GVmITASHNP~~dNGiK~f~~~G~kL~~~~E~~ie~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIGRDtR~Sg  115 (513)
T cd03086          36 TIGVMITASHNPVEDNGVKIVDPDGEMLEESWEPYATQLANASDDELLVLVLMLISVKELNIDLSVPANVFVGRDTRPSG  115 (513)
T ss_pred             CEEEEEECCCCCHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCH
T ss_conf             18999982789903578879899988279899999999745875566666554211233302334565068621577667


Q ss_pred             -----------------------------------------CCCCHHHHHHHHHHHCCC------CHHHCCCCEEEEEEC
Q ss_conf             -----------------------------------------135425666887763263------102118966999844
Q gi|254780544|r  152 -----------------------------------------RVDGVHDRYIEHVKRTLP------RDVTLQGLRIVVDCA  184 (448)
Q Consensus       152 -----------------------------------------~~~~~~~~Yi~~l~~~~~------~~~~~~~lkvvvD~~  184 (448)
                                                               ......+.|++++.+.+.      .....+++||++||+
T Consensus       116 ~~L~~av~~gl~s~g~~v~d~G~~tTP~l~y~V~~~n~~~~~~~~~~~~y~~~~~~~f~~l~~~~~~~~~~~~kvvvD~a  195 (513)
T cd03086         116 PALLQALLDGLKALGGNVIDYGLVTTPQLHYLVRAANTEGAYGEPTEEGYYEKLSKAFNELYNLLQDGGDEPEKLVVDCA  195 (513)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf             99999999888762975886232278148788776156555566525679999999999986334445678887999899


Q ss_pred             CCCCCCCCCCCCCCC--CCCCCCCCCCCCC-CCCCCCCCCCHHHHHH----HHHCCCCCCEEEEECCCCCCCCC--CCCC
Q ss_conf             665433332221233--3222222232223-5577442210137776----42002343036753155210001--3322
Q gi|254780544|r  185 NGASYKVAPEVFWEL--GADVVVIGDKPNG-ININLDCGSTNVLSLQ----RKVHEVRADIGIALDGDGDRVII--VDEK  255 (448)
Q Consensus       185 ~G~~~~~~~~il~~l--g~~~~~i~~~pd~-~~~~~~~~~~~~~~l~----~~v~~~~ad~Gia~DgD~DR~~i--vd~~  255 (448)
                      ||+++..++++++.+  ++++..+|+.+++ ..+|.+|++++++..+    ..+....+|+|++|||||||+++  +|++
T Consensus       196 NG~a~~~~~~l~~~l~~~~~v~v~n~~~~~~~~iN~~cGa~~v~~~~~~p~~~~~~~~~~~~~A~DGDADRli~~~vde~  275 (513)
T cd03086         196 NGVGALKLKELLKRLKKGLSVKIINDGEEGPELLNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRLVYFYPDSS  275 (513)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCCCCCHHCCCCCCHHHHHHCCCCEEEEECCCCCEEEEEEECCC
T ss_conf             74677888999987504861899968999800015656876311032110555541122446654488763789998799


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHC---CCC---CCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCCCCHHHHHHCCCCEEC
Q ss_conf             375--5331135677776553200---223---4333221136004443200-121111123321101111102897001
Q gi|254780544|r  256 GAI--VNGDQIMALIAREWMSHSL---LRG---NGIVTTVMSNIGLERFIAG-LGLSLKRTEVGDRYIMEYMKNNGFNVG  326 (448)
Q Consensus       256 G~~--i~~d~~~~lla~~ll~~~~---~~~---~~vv~~v~ss~~i~~~a~~-~g~~v~~t~vG~k~i~~~~~~~~~~~g  326 (448)
                      |++  ++||++++|++.|+.+...   .+.   ..+|.|+.||....+++++ .|+++++|+||+||+.++|++.++.++
T Consensus       276 G~~~lvDGD~il~llA~~~~~~~~~~~~~~~l~~gvV~T~~sN~~s~~~l~~~~gi~v~~t~vG~k~v~~~~~~~digi~  355 (513)
T cd03086         276 NKFHLLDGDKIATLFAKFIKELLKKAGEELKLTIGVVQTAYANGASTKYLEDVLKVPVVCTPTGVKHLHHAAEEFDIGVY  355 (513)
T ss_pred             CCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEE
T ss_conf             98521372199999999999998624566673222799852253679999984397589916607999999985085256


Q ss_pred             CCCCCE--EEEECC------------------------------CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf             346623--653010------------------------------001444233202466777558888999986564230
Q gi|254780544|r  327 GEQSGH--IILSDY------------------------------GSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQ  374 (448)
Q Consensus       327 ~E~sg~--~~~~~~------------------------------~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~  374 (448)
                      ||.|||  ++|+++                              ++++||+.++++++.++++.+++++++.+.+++|||
T Consensus       356 fE~nGhG~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ttGDgi~~~l~~~~~l~~~~~s~~~l~~~~~~~Pq  435 (513)
T cd03086         356 FEANGHGTVLFSESALAKIEENSSLSDEQEKAAKTLLAFSRLINQTVGDAISDMLAVELILAALGWSPQDWDNLYTDLPN  435 (513)
T ss_pred             EEECCCEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf             31037704995577877886520246420037899999987425777368999999999999819998999864642572


Q ss_pred             EEEEEECCCCCCCCH----------HHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             000000567651155----------899999876554307886599967798227999961599899999999999998
Q gi|254780544|r  375 FLRSVSVKDTSILNS----------SSIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI  443 (448)
Q Consensus       375 ~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i  443 (448)
                      ...+++++++...+.          ..+++.++....+++ .+|++||||||||++|||+||+|++.+++++++++++|
T Consensus       436 ~~~nv~v~~k~~~~~~~~e~~~~~p~~lq~~Id~~~~~~~-~grvlVRpSGTEPlvRV~vEA~~~e~a~~l~~ei~~~V  513 (513)
T cd03086         436 RQLKVKVPDRSVIKTTDAERRLVEPKGLQDKIDAIVAKYN-NGRAFVRPSGTEDVVRVYAEAATQEEADELANEVAELV  513 (513)
T ss_pred             EEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             3777871672000142566653271879999999996149-85899923799718799982299999999999998459


No 21 
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=447.45  Aligned_cols=440  Identities=21%  Similarity=0.276  Sum_probs=336.9

Q ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CCC
Q ss_conf             52033586015506877889999999999999997237998389996687797999999999999789879996---267
Q gi|254780544|r    3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL---GPI   79 (448)
Q Consensus         3 r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~---g~~   79 (448)
                      ..-|||+|+||.+.++.+++.++..+.+|+..++.+...+.+++||.|+|..|+..-+.+++.+.++|++++..   |.+
T Consensus        15 ~~k~GTSG~R~~~~~~~fne~~i~a~~Qai~d~~~~~~~~~~L~vG~D~~~~se~a~~~~lev~aANgv~~iv~~~~g~~   94 (524)
T COG0033          15 DVKFGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALEVLAANGVEVIVQGQGGFT   94 (524)
T ss_pred             HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             04787766667655676678899999999999886168777548788864015899999999997358459994689825


Q ss_pred             CHHHHHHHHH----HHCCCE-EEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC----
Q ss_conf             8089999998----719925-8988654777520125640365456783578999999615664334454332221----
Q gi|254780544|r   80 PSPAVAMLTR----SLRADV-GVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHA----  150 (448)
Q Consensus        80 ptP~l~~a~~----~~~~~g-GI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~----  150 (448)
                      |||++|++++    +.++-+ ||++|+|||||++.|||+..++|+|.+.+.++.|+++............+.++..    
T Consensus        95 ~TPAaSh~I~t~n~k~k~~~~GIvlT~SHNPP~D~GIKYN~~nGGPA~~~~T~aI~~ra~~~~k~~~~~v~r~~~~~~~~  174 (524)
T COG0033          95 PTPAASHAILTHNGKYKALADGIVLTPSHNPPEDGGIKYNPPNGGPAPEKVTDAIEARANDLYKIGLLDVKRIGLDQAYG  174 (524)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
T ss_conf             76377778986055456657807975798995447730579989989757899999999999875533744244434037


Q ss_pred             ---CCCCCHHHHHHHHHHHCCCCHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--CC--CCCCCCCCCCCCC
Q ss_conf             ---11354256668877632631021-1896699984466543333222123332222222--32--2235577442210
Q gi|254780544|r  151 ---KRVDGVHDRYIEHVKRTLPRDVT-LQGLRIVVDCANGASYKVAPEVFWELGADVVVIG--DK--PNGININLDCGST  222 (448)
Q Consensus       151 ---~~~~~~~~~Yi~~l~~~~~~~~~-~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~--~~--pd~~~~~~~~~~~  222 (448)
                         ..+.+....|++.|.+.|+.+.+ ...+++++|+|+|+++.+|.+|+++.......++  ..  ||+...+|+|+-.
T Consensus       175 ~~~v~~~D~v~~Yv~~l~~i~D~daIr~~~~~l~~D~l~g~t~~Y~~~I~e~~~~~~t~v~~~~~p~~~F~~l~~D~ni~  254 (524)
T COG0033         175 SLTVKIIDPVKDYVELLEEIFDFDAIRKAGLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQNVDPTPDFMGLDPDGNIR  254 (524)
T ss_pred             CCEEEEECCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf             63246633067798877886269999998764050656676625699999986488032105766573125879998875


Q ss_pred             HHH----HHHHHHCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHH
Q ss_conf             137----77642002-343036753155210001332237553311356777765532002234--33322113600444
Q gi|254780544|r  223 NVL----SLQRKVHE-VRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGN--GIVTTVMSNIGLER  295 (448)
Q Consensus       223 ~~~----~l~~~v~~-~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~--~vv~~v~ss~~i~~  295 (448)
                      +..    .+...++. .++|||++.|||+||.++++....+++|+..+++++.|+-.....++.  .|..+..||.++|+
T Consensus       255 ~~~ss~~~ma~l~~~~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~lAv~~~y~~~~~~~~~g~~~v~ktl~sS~~iDR  334 (524)
T COG0033         255 MDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRPYWGGIVAVGKTLVSSAAIDR  334 (524)
T ss_pred             EECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
T ss_conf             72374889997643220234212568876656024578754583279999999997677754563211103552788999


Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH--------CCCCHHHHHH
Q ss_conf             32001211111233211011111028970013466236530100014442332024667775--------5888899998
Q gi|254780544|r  296 FIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQ--------YDKPVSTICH  367 (448)
Q Consensus       296 ~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~--------~~~~l~~l~~  367 (448)
                      +++++|.+++|+|||||||.+.+....+.||||||.|   ..|.+.+|++|+.++.+-+|+-        +++..++..+
T Consensus       335 V~~~lGr~lyEvPvG~K~F~~~l~~g~~~~~GEESaG---a~~lRek~g~Wa~~~~~~Ilall~aei~a~t~~~~~~~y~  411 (524)
T COG0033         335 VVAKLGRGLYEVPVGFKWFVDGLDAGSFGFGGEESAG---ASFLREKGGVWATDKDGNILALLAAEITAVTGKIPQEHYA  411 (524)
T ss_pred             HHHHHCCCEEECCCCCEEEECCCCCCCEEECCCCCCC---CCCEECCCCCEEEECHHHHHHHHHHHCHHHHCCCHHHHHH
T ss_conf             9998588538747744122031025632124655545---2010127971356100489998750033654147789999


Q ss_pred             HHHH-CCC-EEEEEECCCCCCCCHHHHHHHHHH-------------------HHH---HC------CCCCEEEEECCCCC
Q ss_conf             6564-230-000000567651155899999876-------------------554---30------78865999677982
Q gi|254780544|r  368 CFEE-YPQ-FLRSVSVKDTSILNSSSIVQAIAD-------------------AES---EL------RGIDRLIVRASGTE  417 (448)
Q Consensus       368 ~l~~-~~~-~~~~~~~~~~~~~~~~~i~~~~~~-------------------~~~---~~------~~~~w~liRpSgTE  417 (448)
                      +|-+ |.. .+..++.+-...  ....++.+..                   ..+   .+      ...+|+..||||||
T Consensus       412 ~~~r~~~~~~Yervda~aa~~--~~a~L~~ls~~~v~~t~l~g~~~~a~~~~~~Gn~s~~~GLkV~~~ng~fa~R~SGT~  489 (524)
T COG0033         412 ELGRNFGRPDYERVDAEAANA--QKARLRKLSPEMVSATTLAGDPITAYLTPAPGNGAAIGGLKVTTENGWFAARPSGTE  489 (524)
T ss_pred             HHHHHHCCCCHHHHCCCHHHH--HHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCHHHCCCEEEEEECCEEEEECCCCC
T ss_conf             999885751087753710078--999998647033775525788640002579986010176699961758998337764


Q ss_pred             CEEEEEEEC-CCHHHHHHHHHHHHHHHHHHC
Q ss_conf             279999615-998999999999999987520
Q gi|254780544|r  418 SLIRIMAEG-DDLSRIKRIVDDLAKVIPMID  447 (448)
Q Consensus       418 p~iriy~Ea-~~~~~~~~l~~~~~~~i~~i~  447 (448)
                      ..+|||+|+ ...++.++.+.+++++|..+.
T Consensus       490 ~t~kiY~Esf~~~~h~~~~q~~~~~iV~~~~  520 (524)
T COG0033         490 ATYKIYAESFEGDEHLKQIQKEAAEIVSEVL  520 (524)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             1332234650783778999999999999998


No 22 
>KOG0625 consensus
Probab=100.00  E-value=0  Score=370.50  Aligned_cols=419  Identities=24%  Similarity=0.321  Sum_probs=330.5

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CCCCH
Q ss_conf             33586015506877889999999999999997-237998389996687797999999999999789879996---26780
Q gi|254780544|r    6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFR-GKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL---GPIPS   81 (448)
Q Consensus         6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~-~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~---g~~pt   81 (448)
                      =||+|+|..+.++ ..|+...+.-+|+-+.+. +..++.++|||.|.|+.+....+.++..-+++|+.-+.+   |..+|
T Consensus        18 pGTSGLRKkvkvF-~qpnY~eNfvQa~~~a~~~~~~kgatLVVGGDGRyy~~~a~~~I~~iaAaNGv~rlivGqnG~LST   96 (558)
T KOG0625          18 PGTSGLRKKVKVF-KQPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYYNKEAIQIIAKIAAANGVGRLIVGQNGILST   96 (558)
T ss_pred             CCCCCHHHCCEEE-CCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             9850001115020-477448999999985366434568569974787421588999999998526851588635870365


Q ss_pred             HHHHHHHHHH-CCCEEEEEEECCCCC---CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCC-
Q ss_conf             8999999871-992589886547775---2012564036545678357899999961566433445-----43322211-
Q gi|254780544|r   82 PAVAMLTRSL-RADVGVMISASHNPY---QDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSC-----YDSIGHAK-  151 (448)
Q Consensus        82 P~l~~a~~~~-~~~gGI~iTaSHNP~---~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~-----~~~~~~~~-  151 (448)
                      |+++..+++. .+.|||++||||||.   .+-||||..++|.|.+...+++|-++-..........     ...+|..+ 
T Consensus        97 PAvS~iIRk~~~a~GgiILTASHNPGGP~~DfGIKfN~~NGGPAPesvTdkIy~itk~i~eYki~~~~~iDls~vG~~~~  176 (558)
T KOG0625          97 PAVSCIIRKYIKAGGGIILTASHNPGGPEGDFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKDPKIDLSTVGKTSF  176 (558)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHCCCCC
T ss_conf             67888987632257628997246899998764248746789988478889999875112211431677777555143101


Q ss_pred             ------CCCCHHHHHHHHHHHCCCCHHH------CCCCEEEEEECCCCCCCCCCCCC-CCCCCCCC-CCCCC--CCCCCC
Q ss_conf             ------1354256668877632631021------18966999844665433332221-23332222-22232--223557
Q gi|254780544|r  152 ------RVDGVHDRYIEHVKRTLPRDVT------LQGLRIVVDCANGASYKVAPEVF-WELGADVV-VIGDK--PNGINI  215 (448)
Q Consensus       152 ------~~~~~~~~Yi~~l~~~~~~~~~------~~~lkvvvD~~~G~~~~~~~~il-~~lg~~~~-~i~~~--pd~~~~  215 (448)
                            ++-+..+.|++.+++.++.+..      .+++|+.+|+|||+++.+...|| ++||.... .+|+.  ||+...
T Consensus       177 ~gpf~VeviDpv~~Yv~lmk~IFDF~~ik~lls~~~~~k~~~DamhGvtGpY~~~IfvdelGa~~~~~~n~~Pl~DFGG~  256 (558)
T KOG0625         177 DGPFTVEVIDPVKDYVNLMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQNCVPLEDFGGG  256 (558)
T ss_pred             CCCEEEEEECHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHCCCEECCCCCCC
T ss_conf             48716998451999999999974789999986589883699751136653013567676509996885057056224799


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCH
Q ss_conf             7442210137776420023430367531552100013322375533113567777655320022---3433322113600
Q gi|254780544|r  216 NLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLR---GNGIVTTVMSNIG  292 (448)
Q Consensus       216 ~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~---~~~vv~~v~ss~~  292 (448)
                      +|+|+-++...|.+.+...+.|||.|+||||||-.+.-.+|-+++|..-.|++|.+.-.-..++   -..+..+..+|.+
T Consensus       257 HPDPNLTYAk~LV~rv~~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na~~IPYF~~~Gv~GfARSmPTs~A  336 (558)
T KOG0625         257 HPDPNLTYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANAEAIPYFRKQGVKGFARSMPTSGA  336 (558)
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHHHHHCCHHHHCCCCHHHHCCCCHHH
T ss_conf             98985056999999861478765432368876214640585254664129998730021655665374302104884057


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCC-HHHHHHH-HH
Q ss_conf             444320012111112332110111110289700134662365301000144423320246677755888-8999986-56
Q gi|254780544|r  293 LERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKP-VSTICHC-FE  370 (448)
Q Consensus       293 i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~-l~~l~~~-l~  370 (448)
                      ++++++++|.+++++|||+|++.+.|....+.++||||.|-- ++|.+++||+||.|.+|.+|+.++++ +.+++.+ +.
T Consensus       337 lDrVak~~gl~~yEvPTGWKfF~nLmDAgklsiCGEESFGTG-SdHIREKDGiWAvlaWlsIlA~~k~~~vedI~~~~W~  415 (558)
T KOG0625         337 LDRVAKKLGLPVYEVPTGWKFFGNLMDAGKLSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHNKQNVVEDIVKEHWA  415 (558)
T ss_pred             HHHHHHHHCCCEEECCCHHHHHHHHHCCCCEEECCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             899999709844766841888776643553004145345677-6322022533458999999976045519999999999


Q ss_pred             HCCCE-EEEEECCCCCCCCHHHHHHHHHHHHH-----------------------------------------HCCCCCE
Q ss_conf             42300-00000567651155899999876554-----------------------------------------3078865
Q gi|254780544|r  371 EYPQF-LRSVSVKDTSILNSSSIVQAIADAES-----------------------------------------ELRGIDR  408 (448)
Q Consensus       371 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------------------------~~~~~~w  408 (448)
                      +|.+- +...+.++.......++++.+.....                                         .+.+.++
T Consensus       416 ~YGR~fftRYDYE~~e~e~ank~m~~l~a~~~~~~vg~~~~~~~~~y~V~~ad~F~Y~DPvDGSvs~~QGlri~F~dGsR  495 (558)
T KOG0625         416 KYGRNFFTRYDYEEVEAEGANKMMEDLEALVSDSFVGKSFSPGDEVYKVAKADDFEYTDPVDGSVSKKQGLRIVFEDGSR  495 (558)
T ss_pred             HHCCCCEEECCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCEEEEECCCCE
T ss_conf             85744243135310470668999999998715221242026788448999648712548878631014746999707968


Q ss_pred             EEEECCCCCC---EEEEEEEC
Q ss_conf             9996779822---79999615
Q gi|254780544|r  409 LIVRASGTES---LIRIMAEG  426 (448)
Q Consensus       409 ~liRpSgTEp---~iriy~Ea  426 (448)
                      +.+|-|||-+   -+|+|+|+
T Consensus       496 ~VfRLSGTGSsGATiRLYie~  516 (558)
T KOG0625         496 IVFRLSGTGSSGATIRLYIES  516 (558)
T ss_pred             EEEEECCCCCCCCEEEEEEHH
T ss_conf             999954678888269976012


No 23 
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00  E-value=0  Score=374.29  Aligned_cols=271  Identities=22%  Similarity=0.335  Sum_probs=212.9

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCC-----------CCCCCCCCC-CCCCCCCCCCCCCHHHHHHH---HHCC-------
Q ss_conf             9669998446654333322212333-----------222222232-22355774422101377764---2002-------
Q gi|254780544|r  176 GLRIVVDCANGASYKVAPEVFWELG-----------ADVVVIGDK-PNGININLDCGSTNVLSLQR---KVHE-------  233 (448)
Q Consensus       176 ~lkvvvD~~~G~~~~~~~~il~~lg-----------~~~~~i~~~-pd~~~~~~~~~~~~~~~l~~---~v~~-------  233 (448)
                      +.++++||+||+++..+.++++.+.           .++..+|+. +++...|.+|++++....+.   .+..       
T Consensus       246 ~~~l~vDcANGVGa~k~~~l~~~~~~~~~~~~~~~~~~i~v~n~~~~~~~~LN~~CGAD~vk~~q~P~~~~~~~~~~~~~  325 (604)
T PTZ00302        246 PQKIVVDAANGVGALAIKSLLEAARQQSSFNALEEFFDVTVLHDNVQDETALNHKCGADYTQKHRSPSAAMKEWAAAYGK  325 (604)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCHHCCCCCCCCCCCCCCCCCC
T ss_conf             86389978763417889999998765301112233340699837999845224530887101035686322235444454


Q ss_pred             ---------CCCCEEEEECCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHH---HHC--CCCCCCCCCCCCCCHH
Q ss_conf             ---------3430367531552100013------3223755331135677776553---200--2234333221136004
Q gi|254780544|r  234 ---------VRADIGIALDGDGDRVIIV------DEKGAIVNGDQIMALIAREWMS---HSL--LRGNGIVTTVMSNIGL  293 (448)
Q Consensus       234 ---------~~ad~Gia~DgD~DR~~iv------d~~G~~i~~d~~~~lla~~ll~---~~~--~~~~~vv~~v~ss~~i  293 (448)
                               ..++.+++|||||||++.+      |+++++|+||++.+|++.++.+   +..  ....+||.|..++...
T Consensus       326 ~~~~~~~v~~~~~~~~SfDGDADRlVy~~~d~~gd~~~~LlDGDkIa~L~A~~l~~~l~~~~~~~l~iGVVqTaYANgas  405 (604)
T PTZ00302        326 QHCNPPGVNPEEVHYYSLDGDADRVVAFFHDPKGDDKWVLLDGDRISILYAMLLRKWLGEEALKALDVGVVQTAYANGAS  405 (604)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCH
T ss_conf             33464334544444555578876689998548887403650541999999999999987601223567789987566245


Q ss_pred             HHHHHCC-CCCCCCCCCCCCCHHHHHHCCCCEECCCCCCE--EEEEC-------------------------CCCCCCCC
Q ss_conf             4432001-21111123321101111102897001346623--65301-------------------------00014442
Q gi|254780544|r  294 ERFIAGL-GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGH--IILSD-------------------------YGSTGDGL  345 (448)
Q Consensus       294 ~~~a~~~-g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~--~~~~~-------------------------~~~~~Dgi  345 (448)
                      .+++++. +.++.+||||.||+..++++.++.+++|.|||  ++|++                         .+..+|||
T Consensus       406 T~yl~~~l~i~v~ct~TGVKhlh~~A~~~DiGvyFEaNGHGTVlfs~~~l~~~~~~~~~~~~~~L~~l~~LiNqtvGDAi  485 (604)
T PTZ00302        406 TDYLQRQLGLRVYTSATGVKNLHPIAHARDIGIYFEANGHGTVLLNEDVIASKVSSLGPEKAALLAALPRLLSQVCGDAI  485 (604)
T ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHHCCEEEEEEECCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999834983487068856399998746845898565856899667776433204766688999999998635634888


Q ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCH----------HHHHHHHHHH----HHHCCCCCEEEE
Q ss_conf             33202466777558888999986564230000000567651155----------8999998765----543078865999
Q gi|254780544|r  346 VAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNS----------SSIVQAIADA----ESELRGIDRLIV  411 (448)
Q Consensus       346 ~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~----~~~~~~~~w~li  411 (448)
                      ..+|++..+|+.+++++++|...|.++|+...++.++++..+..          ..+++++.+.    +....+.+|.+|
T Consensus       486 sd~L~ve~iL~~~~~s~~~w~~~YtdlP~rl~kV~V~dr~~i~tt~aEr~~~~P~gLQ~~Id~~V~~~~~~~~~~GR~FV  565 (604)
T PTZ00302        486 ADLFACEVALLALNMTFQDWADLYTDLPSKQTKVTVANPRVITNTPDERRALTPPGLQEAIDAAVAAAALSSCEVARAFV  565 (604)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             87899999999829998999998554576503788367870326556631048687899999999999875278733997


Q ss_pred             ECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             67798227999961599899999999999998752
Q gi|254780544|r  412 RASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMI  446 (448)
Q Consensus       412 RpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~i  446 (448)
                      |||||||++|||+||++++.+++|..++.++|++.
T Consensus       566 RPSGTEdvVRVYAEA~T~e~ad~La~~Va~~V~~~  600 (604)
T PTZ00302        566 RPSGTEPVVRVYAEATDPAVCESLSAEVEKIVERY  600 (604)
T ss_pred             CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             54788757899970398899999999999999986


No 24 
>pfam02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
Probab=100.00  E-value=2.1e-42  Score=281.23  Aligned_cols=137  Identities=42%  Similarity=0.749  Sum_probs=130.6

Q ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             52033586015506877889999999999999997237998389996687797999999999999789879996267808
Q gi|254780544|r    3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSP   82 (448)
Q Consensus         3 r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP   82 (448)
                      |++|||+||||++|..++||+++.++|.|++++++.+..+++|+||||+|.+|+++++++++||+++|++|+++|.+|||
T Consensus         1 ~~~Fgt~GiRG~~~~~~lt~~~~~~i~~a~~~~l~~~~~~~~I~ig~D~R~ss~~~~~~~~~gl~~~G~~v~~~g~~pTP   80 (138)
T pfam02878         1 RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARALAAGLAANGVEVILLGLLPTP   80 (138)
T ss_pred             CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCH
T ss_conf             97148999612648998899999999999999998648999799997996779999999999704419789635887981


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             999999871992589886547775201256403654567835789999996156643
Q gi|254780544|r   83 AVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTS  139 (448)
Q Consensus        83 ~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~  139 (448)
                      +++|+++++++++||||||||||++||||||++++|.+++++++++||+.+++..+.
T Consensus        81 ~~~~~v~~~~~~~Gi~ITASHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~  137 (138)
T pfam02878        81 ALSFATRKLNADGGIMITASHNPPDYNGIKFYDSDGGPISPEVEEKIEAIIEKEDFY  137 (138)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             999999961697499998278997535699988998899889999999999764325


No 25 
>KOG2537 consensus
Probab=100.00  E-value=1.9e-37  Score=250.58  Aligned_cols=353  Identities=22%  Similarity=0.302  Sum_probs=251.4

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf             79983899966877979999999999997898799962678089999998719925898865477752012564036545
Q gi|254780544|r   40 KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGY  119 (448)
Q Consensus        40 ~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~  119 (448)
                      ....+|++|+|+|++|+.+.+++..|+-+....+.++|.++||.++|.++..+-. +-|. ++                 
T Consensus       122 t~~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~GvvtTPqLHy~v~~~n~~-~~~~-~~-----------------  182 (539)
T KOG2537         122 TVSAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDYGVVTTPQLHYMVRASNTK-GAYG-KG-----------------  182 (539)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCEEEECCHHHHHHHHHCCCC-CCCC-CC-----------------
T ss_conf             5221699803798752789988888888664285326887512665666433555-6556-67-----------------


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCH------HHCCCCEEEEEECCCCCCCCCC
Q ss_conf             6783578999999615664334454332221113542566688776326310------2118966999844665433332
Q gi|254780544|r  120 KVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRD------VTLQGLRIVVDCANGASYKVAP  193 (448)
Q Consensus       120 ~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~------~~~~~lkvvvD~~~G~~~~~~~  193 (448)
                        .+.+                                +.|++.+...+...      ...+..|+.|||.||++..-+.
T Consensus       183 --~~t~--------------------------------~~Y~~~ls~af~~l~~~~~~~~~~~~k~~VD~ANGvG~~klk  228 (539)
T KOG2537         183 --KPTE--------------------------------EGYYSKLSKAFNELRNITQESGDEVSKLIVDCANGVGAPKLK  228 (539)
T ss_pred             --CCCC--------------------------------CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf             --7883--------------------------------207788988788765301246776623899885655628788


Q ss_pred             CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC---CCC-CEEEEECCCCCCCCCC--CCCC--CCCCCCH
Q ss_conf             2212333--222222232223557744221013777642002---343-0367531552100013--3223--7553311
Q gi|254780544|r  194 EVFWELG--ADVVVIGDKPNGININLDCGSTNVLSLQRKVHE---VRA-DIGIALDGDGDRVIIV--DEKG--AIVNGDQ  263 (448)
Q Consensus       194 ~il~~lg--~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~---~~a-d~Gia~DgD~DR~~iv--d~~G--~~i~~d~  263 (448)
                      ++..-..  .++..+|+..|+.-.|..|++.....-++.-..   ..+ -....||||+||+..+  ++++  ++++||.
T Consensus       229 ~l~~i~~~~l~vEivNd~~dpelLN~~CGADFVkt~QkpP~~~~~~~~~~~caSfDGDADRlvyf~~~~~~~f~llDGDk  308 (539)
T KOG2537         229 ELLGIDSGLLNVEVVNDGIDPGLLNNGCGADFVKTKQKPPKGLSPIKANTRCASFDGDADRLVYFYIDDDSEFHLLDGDK  308 (539)
T ss_pred             HHHCCCCCCCCEEEECCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEECCHH
T ss_conf             88515887674699718987545415656342210466988889888887503440356516999936984067624508


Q ss_pred             HHHHHHHHHHHHHCC----CCCCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCE--EEEE
Q ss_conf             356777765532002----234333221136004443200-121111123321101111102897001346623--6530
Q gi|254780544|r  264 IMALIAREWMSHSLL----RGNGIVTTVMSNIGLERFIAG-LGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGH--IILS  336 (448)
Q Consensus       264 ~~~lla~~ll~~~~~----~~~~vv~~v~ss~~i~~~a~~-~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~--~~~~  336 (448)
                      +..+++.|+-.....    -..+||.|..++..--+++.. .+++++.+++|-|++..++.+.++.+.+|.+||  +.|+
T Consensus       309 istlla~~l~~ll~~~~~~l~~GvVqtaYaNgast~yl~~~l~~~vv~v~tGvKhlh~~A~efDiGiyFEaNGHGti~FS  388 (539)
T KOG2537         309 IATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVPTGVKHLHHAAAEFDIGIYFEANGHGTILFS  388 (539)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEEECCCCCCEEEH
T ss_conf             99999999999999851452000589886258507666653188657710254348888886161269850676212310


Q ss_pred             C-------------------------------CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             1-------------------------------000144423320246677755888899998656423000000056765
Q gi|254780544|r  337 D-------------------------------YGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTS  385 (448)
Q Consensus       337 ~-------------------------------~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  385 (448)
                      +                               ....+|++..++++..+|+.++++..++.+.|.+.|....++++.+..
T Consensus       389 ~~~~~~i~~~~~~~~~~~~~a~~~L~~~~~Linq~vGDAisd~llv~~il~~~~~s~~~w~e~y~dlPnrq~Kv~v~Dr~  468 (539)
T KOG2537         389 EAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAISDMLAVEAILAHKGWSVQDWDELYRDLPNRQLKVKVPDRS  468 (539)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCE
T ss_conf             77787545565178752149999999987653212013320059999999863777878899835786634777750220


Q ss_pred             CCCHHHHHHHHHH----------HHHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             1155899999876----------554307886599967798227999961599899999999999998752
Q gi|254780544|r  386 ILNSSSIVQAIAD----------AESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMI  446 (448)
Q Consensus       386 ~~~~~~i~~~~~~----------~~~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~i  446 (448)
                      ........+++-.          ..... ..++-+|||||||.++|||+|+.+++.+++|..++.++|..+
T Consensus       469 i~~ttdaer~~v~P~glQ~~Ida~vaky-~~gRaFvR~SGTEdvVRVYAEa~t~~~~d~l~~~v~~~v~~~  538 (539)
T KOG2537         469 IIKTTDAERQLVKPVGLQDKIDALVAKY-KRGRSFVRPSGTEDVVRVYAEASTKEDADQLALEVAQLVLKL  538 (539)
T ss_pred             EEECHHHHHHCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             3412055553279488999999988623-588517702676203788874685455899999999999852


No 26 
>pfam02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III.
Probab=99.91  E-value=7.4e-25  Score=172.85  Aligned_cols=110  Identities=43%  Similarity=0.699  Sum_probs=103.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEECCC
Q ss_conf             33113567777655320022343332211360044432001211111233211011111028970013466236530100
Q gi|254780544|r  260 NGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYG  339 (448)
Q Consensus       260 ~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~~~  339 (448)
                      +||++++|+++++++++  ++ .||.|+.||.+++++++++|++++||+|||+||++.|++.++.||||+|||++|++|.
T Consensus         1 ~gD~l~~l~a~~ll~~~--~~-~vv~tv~ts~~~~~~~~~~g~~~~~t~vG~~~v~~~m~~~~~~~ggE~SG~~~~~~~~   77 (111)
T pfam02880         1 DGDQILALLARYLLELK--PG-AVVKTVMSSLALDRVAEELGGELVRTKVGDKYVKEKMREEGAVLGGEESGHIIFLDFA   77 (111)
T ss_pred             CHHHHHHHHHHHHHHHC--CC-CEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCEEEEECCC
T ss_conf             96899999999999878--99-5999442758999999987998999577528999886432650445067449984178


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf             014442332024667775588889999865642
Q gi|254780544|r  340 STGDGLVAALQVLRYIKQYDKPVSTICHCFEEY  372 (448)
Q Consensus       340 ~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~  372 (448)
                      +++||+++++++|+++++++++++++++++|++
T Consensus        78 ~~~Dgi~a~l~~le~l~~~~~~ls~l~~~l~~~  110 (111)
T pfam02880        78 TTKDGIIAALLVLELLAETGKSLSELLEELPKR  110 (111)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             788789999999999998299999999985411


No 27 
>pfam02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II.
Probab=99.85  E-value=7.5e-22  Score=154.27  Aligned_cols=99  Identities=36%  Similarity=0.543  Sum_probs=88.9

Q ss_pred             HHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCC
Q ss_conf             66688776326310-21189669998446654333322212333222222232223557744221---013777642002
Q gi|254780544|r  158 DRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS---TNVLSLQRKVHE  233 (448)
Q Consensus       158 ~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~---~~~~~l~~~v~~  233 (448)
                      +.|++++++.++.+ ++.++|||++||+||+++.+++++|+++||+++.+|+.||+.|++..|+|   +++..+.+.+++
T Consensus         1 ~~Y~~~l~~~i~~~~i~~~~lkv~vD~~~G~~~~~~~~ll~~lg~~~~~~~~~~d~~f~~~~p~P~~~~~l~~~~~~v~~   80 (103)
T pfam02879         1 DAYIDRLASAFDLEALKKRGLKVVYDPLHGVGGEILPELLKRLGAEVVEENCEPDGDFPTKAPNPEEPEALELLIELVKE   80 (103)
T ss_pred             CHHHHHHHHHCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             97899999867999971689889997788635899999999869989994365699879929399845479999998744


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             34303675315521000133223
Q gi|254780544|r  234 VRADIGIALDGDGDRVIIVDEKG  256 (448)
Q Consensus       234 ~~ad~Gia~DgD~DR~~ivd~~G  256 (448)
                      .++|+|+++||||||++++|++|
T Consensus        81 ~~ad~g~a~DgDaDR~~~vd~~G  103 (103)
T pfam02879        81 VGADLGIAFDGDADRLGVVDEKG  103 (103)
T ss_pred             CCCEEEEEECCCCCEEEEECCCC
T ss_conf             39769999878876179967999


No 28 
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.19  E-value=2.6e-11  Score=89.16  Aligned_cols=62  Identities=27%  Similarity=0.457  Sum_probs=54.9

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             983899966877979999999999997898799962678089999998719925898865477
Q gi|254780544|r   42 HRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHN  104 (448)
Q Consensus        42 ~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~iTaSHN  104 (448)
                      ...|+||||+|+||+++.+++.+||.+.|++|+|+|.+|||.++|+++..+.. |.+.+++|+
T Consensus       102 ~~~VvIGRDtR~Sg~~L~~av~~gl~s~g~~v~d~G~~tTP~l~y~V~~~n~~-~~~~~~~~~  163 (513)
T cd03086         102 PANVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLVRAANTE-GAYGEPTEE  163 (513)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCHH
T ss_conf             65068621577667999999998887629758862322781487887761565-555665256


No 29 
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=99.16  E-value=2.9e-11  Score=88.86  Aligned_cols=44  Identities=41%  Similarity=0.606  Sum_probs=28.3

Q ss_pred             CCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             99258988654777520125640365456783578999999615
Q gi|254780544|r   92 RADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLED  135 (448)
Q Consensus        92 ~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~  135 (448)
                      ++.-||||||||||+++||+|+++++|..+..++|...+++.+.
T Consensus        72 g~~vGVMITASHNP~~DNGVKlvdp~G~mL~~~wE~~at~laNa  115 (604)
T PTZ00302         72 GCSVGCMITASHNPYTDNGLKLIDVDGGMLEVSWEKWCTRAANA  115 (604)
T ss_pred             CCEEEEEEECCCCCCHHCCEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             97599999727899143887687799874138899999998478


No 30 
>pfam00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain.
Probab=98.99  E-value=2.1e-09  Score=77.41  Aligned_cols=59  Identities=31%  Similarity=0.504  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCC-EEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf             1155899999876554307886-5999677982279999615998999999999999987
Q gi|254780544|r  386 ILNSSSIVQAIADAESELRGID-RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIP  444 (448)
Q Consensus       386 ~~~~~~i~~~~~~~~~~~~~~~-w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~  444 (448)
                      +.....+...+.+....+.+.+ |++||||||||++|+|+|+.|.+.++++.+++.++|+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~dG~~~~vR~SGTEp~lRv~vE~~~~~~~~~~~~~i~~~i~   71 (71)
T pfam00408        12 VAALEALLKAFAEALKILFEDGRRLVVRPSGTEPVLRVYVEADDEAELEEIAAEVAELLK   71 (71)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             313999999999999996289758998438998469999961999999999999999859


No 31 
>KOG2537 consensus
Probab=97.92  E-value=7.2e-06  Score=55.57  Aligned_cols=40  Identities=40%  Similarity=0.667  Sum_probs=33.2

Q ss_pred             HHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf             7199258988654777520125640365456783578999
Q gi|254780544|r   90 SLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRI  129 (448)
Q Consensus        90 ~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~I  129 (448)
                      ..+..-|+||||||||.++||+|+.++.|..+...++..-
T Consensus        56 l~gs~IGvMiTASHNp~~dNGvKivd~~g~ml~~~WE~~a   95 (539)
T KOG2537          56 LGGSTIGVMITASHNPVEDNGVKIVDPSGEMLAASWEEYA   95 (539)
T ss_pred             HCCCEEEEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             5598169999853584330684045786223343446650


No 32 
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=93.74  E-value=0.51  Score=25.61  Aligned_cols=19  Identities=16%  Similarity=0.069  Sum_probs=8.3

Q ss_pred             CCCEEEEEECCCCCCCCHH
Q ss_conf             5201256403654567835
Q gi|254780544|r  106 YQDNGIKLFGPDGYKVSTD  124 (448)
Q Consensus       106 ~~~nGiK~~~~~G~~i~~~  124 (448)
                      -.||-+-+.+..+.-+++.
T Consensus        34 ttyNSYLI~~~k~aLID~~   52 (388)
T COG0426          34 TTYNSYLIVGDKTALIDTV   52 (388)
T ss_pred             CEEEEEEEECCCEEEECCC
T ss_conf             1445589967967998899


No 33 
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=93.21  E-value=0.24  Score=27.63  Aligned_cols=57  Identities=21%  Similarity=0.233  Sum_probs=42.3

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-----HHHHHH----HHHHHCCCEEEEEEEC
Q ss_conf             3899966877979999999999997898799962678-----089999----9987199258988654
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIP-----SPAVAM----LTRSLRADVGVMISAS  102 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~p-----tP~l~~----a~~~~~~~gGI~iTaS  102 (448)
                      +|+||.|.  .+-.++..+..-|.+.|.+|.|+|.-.     -|....    ++....++-||.|.+|
T Consensus         2 KI~IgsDH--aG~~LK~~i~~~L~~~G~eV~D~Gt~~~~svDYPd~a~~Va~~V~~~~~~~GIliCGT   67 (171)
T PRK12615          2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGT   67 (171)
T ss_pred             EEEEEECC--HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             79999686--1599999999999988997897799998878826999999999976997646998178


No 34 
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=92.65  E-value=0.74  Score=24.62  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=39.0

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-----HHHHHH----HHHHHCCCEEEEEEEC
Q ss_conf             3899966877979999999999997898799962678-----089999----9987199258988654
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIP-----SPAVAM----LTRSLRADVGVMISAS  102 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~p-----tP~l~~----a~~~~~~~gGI~iTaS  102 (448)
                      +|+||.|..  +-.++..+..-|.+.|.+|+|+|.-.     -|-...    ++....++-||.|.+|
T Consensus         2 KI~IgsDHa--G~eLKe~l~~~L~~~G~eV~D~G~~~~~~~DYPd~a~~va~~V~~~~~~~GIliCGT   67 (171)
T PRK08622          2 KIAIGCDHI--VTDEKMAVSDFLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGT   67 (171)
T ss_pred             EEEEEECCH--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             799984860--699999999999978998997589998878878999999999976987638998078


No 35 
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=87.72  E-value=2  Score=22.04  Aligned_cols=57  Identities=23%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH--HH----HHHHHHHHCCCEEEEEEEC
Q ss_conf             38999668779799999999999978987999626780--89----9999987199258988654
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPS--PA----VAMLTRSLRADVGVMISAS  102 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~pt--P~----l~~a~~~~~~~gGI~iTaS  102 (448)
                      +|+||.|..  +..+++.+..-|...|.+|.|++...+  |-    +.-++....++-||.|.+|
T Consensus         2 kI~igsDHa--G~~lK~~i~~~L~~~g~~v~D~~~~~~DypD~a~~va~~V~~~~~~~GIliCGt   64 (141)
T PRK12613          2 AIILGADAH--GNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAY   64 (141)
T ss_pred             EEEEEECCH--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             899995872--499999999999987998680798888886289999999975998659998688


No 36 
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.69  E-value=1.7  Score=22.47  Aligned_cols=52  Identities=17%  Similarity=0.236  Sum_probs=37.9

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHHCCCEEEEEEE
Q ss_conf             99966877979999999999997898799962678089-999998719925898865
Q gi|254780544|r   46 VIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPA-VAMLTRSLRADVGVMISA  101 (448)
Q Consensus        46 vVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~-l~~a~~~~~~~gGI~iTa  101 (448)
                      .+|.|.+-.+   ++.++..|..+|++|+++|.-.+|. +--++.+.+++ .|.+|+
T Consensus         6 k~g~DgHd~G---~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad-~IglSs   58 (122)
T cd02071           6 KPGLDGHDRG---AKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVD-VIGLSS   58 (122)
T ss_pred             EECCCHHHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEEEC
T ss_conf             6478622877---9999999997897699679988999999999973998-999964


No 37 
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394   These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=87.56  E-value=1.3  Score=23.03  Aligned_cols=55  Identities=27%  Similarity=0.406  Sum_probs=42.7

Q ss_pred             CCEE---EEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             8389---99668779799999999999978987999626-78089999998719925898865
Q gi|254780544|r   43 RRVV---IGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISA  101 (448)
Q Consensus        43 ~~vv---Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTa  101 (448)
                      +|||   ||.|.+.-+   -+.+=..|..+|++|+++|. +|--..--|.-..+|+ +|.|++
T Consensus         2 ~T~VlGvIGsDcHAVG---~k~LDhaf~nagF~V~NlGv~~~~~efi~AAiet~AD-AilvSS   60 (134)
T TIGR01501         2 KTVVLGVIGSDCHAVG---NKVLDHAFRNAGFTVVNLGVLTAQEEFIKAAIETDAD-AILVSS   60 (134)
T ss_pred             CEEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCC-EEEEEC
T ss_conf             7288870145402454---3788888732898898721316157888773228998-899830


No 38 
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=87.09  E-value=2.2  Score=21.71  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=12.4

Q ss_pred             HCCCCHHHHHHHHHH-CCCEEEE
Q ss_conf             558888999986564-2300000
Q gi|254780544|r  357 QYDKPVSTICHCFEE-YPQFLRS  378 (448)
Q Consensus       357 ~~~~~l~~l~~~l~~-~~~~~~~  378 (448)
                      +.+-++.++.+.|++ |+++...
T Consensus       525 ra~aT~GEis~aL~~vfGry~a~  547 (715)
T PRK09426        525 RARATVGEISDALEKVFGRHRAE  547 (715)
T ss_pred             HHCCCHHHHHHHHHHHHCCCCCC
T ss_conf             82586889999999972644488


No 39 
>pfam02502 LacAB_rpiB Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).
Probab=86.40  E-value=2.4  Score=21.48  Aligned_cols=57  Identities=26%  Similarity=0.478  Sum_probs=35.5

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-----HHHHHHHH----HHHCCCEEEEEEEC
Q ss_conf             3899966877979999999999997898799962678-----08999999----87199258988654
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIP-----SPAVAMLT----RSLRADVGVMISAS  102 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~p-----tP~l~~a~----~~~~~~gGI~iTaS  102 (448)
                      +|+||.|..  +..++..+..-|.+.|.+|+|+|..+     -|-....+    ....++-||.+..|
T Consensus         1 KI~i~sDha--G~~lK~~l~~~L~~~g~~v~D~G~~~~~~~dYpd~a~~va~~v~~~~~~~GIliCgs   66 (140)
T pfam02502         1 KIAIGSDHA--GFELKEAIKEYLKAKGYEVIDVGTYSGESVDYPDYAIKVAEAVASGEADRGILICGT   66 (140)
T ss_pred             CEEEEECCC--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             989983872--799999999999987998998288989988748899999999845884168998478


No 40 
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=86.10  E-value=2.5  Score=21.38  Aligned_cols=52  Identities=23%  Similarity=0.393  Sum_probs=40.7

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             99668779799999999999978987999626-780899999987199258988654
Q gi|254780544|r   47 IGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISAS  102 (448)
Q Consensus        47 Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTaS  102 (448)
                      ++-|.+..+   ++.++..|..+|.+|+++|. +|...+--++.+.+++ -|.++++
T Consensus         7 v~gD~H~iG---~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d-~I~lS~~   59 (119)
T cd02067           7 VGGDGHDIG---KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDAD-AIGLSGL   59 (119)
T ss_pred             CCCCHHHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEEECC
T ss_conf             398567789---9999999997899899899999999999999970999-9999622


No 41 
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=82.62  E-value=3.5  Score=20.44  Aligned_cols=57  Identities=26%  Similarity=0.524  Sum_probs=37.4

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CH-----HHHHH----HHHHHCCCEEEEEEEC
Q ss_conf             389996687797999999999999789879996267-80-----89999----9987199258988654
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPI-PS-----PAVAM----LTRSLRADVGVMISAS  102 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~-pt-----P~l~~----a~~~~~~~gGI~iTaS  102 (448)
                      +|+||.|..  +-.++..+..-|.+.|.+|.|+|.- ..     |-...    .+....++-||.|..|
T Consensus         2 kI~igsDHa--G~~lK~~l~~~L~~~g~~v~D~G~~~~~~~~DYpd~a~~va~~V~~~~~~~GIliCGt   68 (149)
T PRK05571          2 KIAIGSDHA--GFELKEEIIEHLEEKGHEVIDLGPDSYDASVDYPDFAIKVAEAVVAGEADRGILICGT   68 (149)
T ss_pred             EEEEEECCH--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             799985872--7999999999999789989976999887788838999999999966996379998478


No 42 
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245   This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=81.90  E-value=3.6  Score=20.36  Aligned_cols=75  Identities=11%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             CHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEE--------ECCCCCCCCCCCCCHHHHHHHHCCCCH
Q ss_conf             004443200121111123321101111102897001346623653--------010001444233202466777558888
Q gi|254780544|r  291 IGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIIL--------SDYGSTGDGLVAALQVLRYIKQYDKPV  362 (448)
Q Consensus       291 ~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~--------~~~~~~~Dgi~a~l~~le~l~~~~~~l  362 (448)
                      ....++|+.+|-++.+..    .|..- .=++..+|....|-++.        +.|+|++.|-+++..++++.-.-..|+
T Consensus       159 AvARr~A~e~gK~YE~~N----~ivaH-lGGGISvaAH~~Gr~vDVNNALdGeGPFSPERsG~LP~~dlv~lCySGkyT~  233 (353)
T TIGR02707       159 AVARRIAKELGKRYEEMN----LIVAH-LGGGISVAAHRKGRVVDVNNALDGEGPFSPERSGTLPLGDLVDLCYSGKYTK  233 (353)
T ss_pred             HHHHHHHHHCCCCCCCCC----EEEEE-CCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH
T ss_conf             999999997289600445----48998-2887034145486179973477843293875456565888999872761038


Q ss_pred             HHHHHHHH
Q ss_conf             99998656
Q gi|254780544|r  363 STICHCFE  370 (448)
Q Consensus       363 ~~l~~~l~  370 (448)
                      +++.+.+-
T Consensus       234 ~E~kKkI~  241 (353)
T TIGR02707       234 EEMKKKIV  241 (353)
T ss_pred             HHHHHHHC
T ss_conf             89999852


No 43 
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.99  E-value=4  Score=20.08  Aligned_cols=60  Identities=22%  Similarity=0.241  Sum_probs=43.8

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             9838999668779799999999999978987999626-780899999987199258988654
Q gi|254780544|r   42 HRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISAS  102 (448)
Q Consensus        42 ~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTaS  102 (448)
                      .++|++|.=.--.-..=++.++.-|.+.|.+|+++|. +|.+.+--++++.+++ -|.+|+|
T Consensus        82 ~g~vv~~tv~Gd~H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~d-ivglS~~  142 (201)
T cd02070          82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPD-ILGLSAL  142 (201)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCC-EEEEECC
T ss_conf             865999627987738999999999987897799778999979999999972989-9999625


No 44 
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family; InterPro: IPR003500   This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).    Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism . Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit.   Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology .; GO: 0005975 carbohydrate metabolic process.
Probab=79.46  E-value=4.5  Score=19.79  Aligned_cols=57  Identities=23%  Similarity=0.447  Sum_probs=32.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-HHHH-----HH----HHHHHCCCEEEEEEECC
Q ss_conf             899966877979999999999997898799962678-0899-----99----99871992589886547
Q gi|254780544|r   45 VVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIP-SPAV-----AM----LTRSLRADVGVMISASH  103 (448)
Q Consensus        45 vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~p-tP~l-----~~----a~~~~~~~gGI~iTaSH  103 (448)
                      |+||.|  +++-.|++-+.+=|-..+++|+|+|..+ ++..     .+    .+.....+.||.|.++-
T Consensus         1 i~igSD--H~G~~LK~~I~~hL~~~~~~~iD~G~~~~~~~~DYPdYA~~Va~~v~~~~~~~GILICGTG   67 (146)
T TIGR00689         1 IAIGSD--HAGLELKEKIIEHLEQKGLEVIDLGTLEYDESVDYPDYAKLVAQKVVEGEASLGILICGTG   67 (146)
T ss_pred             CEEECC--CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             965026--6665789999998743684157506767889988747899999998628887324773687


No 45 
>KOG0061 consensus
Probab=78.99  E-value=4.7  Score=19.68  Aligned_cols=79  Identities=14%  Similarity=0.036  Sum_probs=52.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf             88999999999999999723799838999668779799999999999978987999626780899999987199258988
Q gi|254780544|r   20 ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMI   99 (448)
Q Consensus        20 ~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~i   99 (448)
                      +..-.+.++-+.+-.+.    ..++.||--..-|+|+.+..-=--.+++.| +++..|....-.-+|..      .|..+
T Consensus       201 LDS~sA~~vv~~Lk~lA----~~grtVi~tIHQPss~lf~lFD~l~lLs~G-~~vy~G~~~~~~~ff~~------~G~~~  269 (613)
T KOG0061         201 LDSFSALQVVQLLKRLA----RSGRTVICTIHQPSSELFELFDKLLLLSEG-EVVYSGSPRELLEFFSS------LGFPC  269 (613)
T ss_pred             CCHHHHHHHHHHHHHHH----HCCCEEEEEEECCCHHHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHH------CCCCC
T ss_conf             55576899999999998----679989999768728999999899998289-76786574047899986------49999


Q ss_pred             EECCCCCCCE
Q ss_conf             6547775201
Q gi|254780544|r  100 SASHNPYQDN  109 (448)
Q Consensus       100 TaSHNP~~~n  109 (448)
                      -.-+||+||-
T Consensus       270 P~~~Npadf~  279 (613)
T KOG0061         270 PELENPADFL  279 (613)
T ss_pred             CCCCCCHHHH
T ss_conf             9988819999


No 46 
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=78.87  E-value=4.7  Score=19.66  Aligned_cols=56  Identities=20%  Similarity=0.312  Sum_probs=40.0

Q ss_pred             CCCEEEEE---CCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             98389996---68779799999999999978987999626-78089999998719925898865
Q gi|254780544|r   42 HRRVVIGK---DTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISA  101 (448)
Q Consensus        42 ~~~vvVg~---D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTa  101 (448)
                      ..+|++|.   |.+..+   ++.++.-|.++|++|+|+|. +|.-.+--++++.+++ -|.+++
T Consensus        88 ~GkvvigTV~GD~HdiG---kniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~~~d-ivglSa  147 (213)
T cd02069          88 KGKIVLATVKGDVHDIG---KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKAD-IIGLSG  147 (213)
T ss_pred             CCEEEEEEECCCCCCHH---HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC-EEEEEC
T ss_conf             88599997578634121---8999999997896688505899899999999974999-999832


No 47 
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=78.43  E-value=4.9  Score=19.58  Aligned_cols=58  Identities=28%  Similarity=0.520  Sum_probs=38.6

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCC--CEEEEECCCC-----HHHHHH----HHHHHCCCEEEEEEEC
Q ss_conf             8389996687797999999999999789--8799962678-----089999----9987199258988654
Q gi|254780544|r   43 RRVVIGKDTRLSGYMLENSLVAGFTAAG--MDAFILGPIP-----SPAVAM----LTRSLRADVGVMISAS  102 (448)
Q Consensus        43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G--~~V~~~g~~p-----tP~l~~----a~~~~~~~gGI~iTaS  102 (448)
                      .+|+||.|..  +-.++..+..-|.+.|  .+|+|+|...     -|-...    ++....++-||.|.+|
T Consensus         3 mkI~igsDHa--G~~lK~~l~~~L~~~g~~~~V~D~G~~~~~~~DYPd~a~~va~~V~~~~~~~GIliCGt   71 (156)
T PTZ00215          3 RRVAIGCDHA--AFAIHEEIMDYVSAAGDEFKVMYMGPSSDESVDYPDYAAQVCEAVARGEADTGILVCGT   71 (156)
T ss_pred             CEEEEEECCH--HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             6399982844--89999999999997699569896299988889827899999999974887169998079


No 48 
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=76.45  E-value=5.6  Score=19.23  Aligned_cols=57  Identities=23%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             CCCCCEEE---EECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH-HHCCCEEEEEE
Q ss_conf             79983899---966877979999999999997898799962678089999998-71992589886
Q gi|254780544|r   40 KKHRRVVI---GKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTR-SLRADVGVMIS  100 (448)
Q Consensus        40 ~~~~~vvV---g~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~-~~~~~gGI~iT  100 (448)
                      +..++|+|   |.|.+.-+   +..++..|.+.|++|++.|...||.-..... +.+.+ .|.|+
T Consensus        10 g~rprvlvak~GlDgHd~g---akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~-vIgvS   70 (143)
T COG2185          10 GARPRVLVAKLGLDGHDRG---AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVD-VIGVS   70 (143)
T ss_pred             CCCCEEEEECCCCCCCCCC---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEEE
T ss_conf             8986699953676544313---1999999985793798158758999999999864798-89997


No 49 
>PRK05569 flavodoxin; Provisional
Probab=76.22  E-value=5.6  Score=19.19  Aligned_cols=40  Identities=20%  Similarity=0.148  Sum_probs=31.6

Q ss_pred             CCEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             8389996687797-999999999999789879996267808
Q gi|254780544|r   43 RRVVIGKDTRLSG-YMLENSLVAGFTAAGMDAFILGPIPSP   82 (448)
Q Consensus        43 ~~vvVg~D~R~~s-~~~~~~~~~gl~~~G~~V~~~g~~ptP   82 (448)
                      ++|+|-||+-..+ +.++++++.|+.+.|++|-......++
T Consensus         2 ~Kv~IvY~S~~GnTe~mA~~IaeG~~~~G~ev~v~~~~~~~   42 (141)
T PRK05569          2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK   42 (141)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             74999998996089999999999999769819999842399


No 50 
>PRK00148 Maf-like protein; Reviewed
Probab=75.92  E-value=4.9  Score=19.57  Aligned_cols=167  Identities=14%  Similarity=0.108  Sum_probs=69.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHH----HHC-CCCCCEEEEECCCCCCCCCCCCC--CC
Q ss_conf             654333322212333222222232223557-74422101377764----200-23430367531552100013322--37
Q gi|254780544|r  186 GASYKVAPEVFWELGADVVVIGDKPNGINI-NLDCGSTNVLSLQR----KVH-EVRADIGIALDGDGDRVIIVDEK--GA  257 (448)
Q Consensus       186 G~~~~~~~~il~~lg~~~~~i~~~pd~~~~-~~~~~~~~~~~l~~----~v~-~~~ad~Gia~DgD~DR~~ivd~~--G~  257 (448)
                      ++++..=.++|+.+|+++..+...-|.... ...| .+....+++    .+. ...-.+.++.|.    ++..+++  |+
T Consensus         7 AS~Sp~R~~lL~~~g~~f~v~~~~idE~~~~~~~p-~~~v~~lA~~KA~~v~~~~~~~iVI~aDt----vv~~~g~i~gK   81 (195)
T PRK00148          7 ASASPARLKLLRLAGIPPLVVVSHVDEDAIAASLP-SELVQALALAKAEAVAEVAPDAVVLGCDS----MLLIDGRLLGK   81 (195)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCEEEEEEE----EEEECCEEECC
T ss_conf             57999999999977998499789989898877899-99999999999999998789977996435----99989998359


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHH-----HHHHCCC-----CEECC
Q ss_conf             5533113567777655320022343332211360044432001211111233211011-----1110289-----70013
Q gi|254780544|r  258 IVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIM-----EYMKNNG-----FNVGG  327 (448)
Q Consensus       258 ~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~-----~~~~~~~-----~~~g~  327 (448)
                      .-+.++...+|..  +.-   +.-.|++.++   ++..--...-..+..|.|=|+.+.     +.+..+.     -.++.
T Consensus        82 P~~~~eA~~~L~~--lsg---k~H~v~Tgv~---v~~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yv~~~~~~~kAG~y~i  153 (195)
T PRK00148         82 PHTPEEAIERWQQ--MRG---RTGELYTGHA---LIDLDQNVTFVEYERTEVHFAELSDEEIEAYVATGEPLDCAGAFTL  153 (195)
T ss_pred             CCCHHHHHHHHHH--HCC---CCEEEEEEEE---EEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             9999999999998--669---9749998899---9988998899999989999946999999999960998673038765


Q ss_pred             CCCCEEEEECCCCCCCCCC--CCCHHHHHHHHCCCCHHHH
Q ss_conf             4662365301000144423--3202466777558888999
Q gi|254780544|r  328 EQSGHIILSDYGSTGDGLV--AALQVLRYIKQYDKPVSTI  365 (448)
Q Consensus       328 E~sg~~~~~~~~~~~Dgi~--a~l~~le~l~~~~~~l~~l  365 (448)
                      |.-|..++.....+.+.++  ++..+.++|.+.|.+++++
T Consensus       154 eg~g~~~i~~I~G~~~nV~GLPl~~l~~~L~~~G~~~~~~  193 (195)
T PRK00148        154 EGLGGWFVDKIEGDPSNVIGLSLPLLRRLLKRFGYSVSDL  193 (195)
T ss_pred             CCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHC
T ss_conf             3585433654388830030888999999999859985545


No 51 
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=75.45  E-value=5.9  Score=19.07  Aligned_cols=52  Identities=25%  Similarity=0.331  Sum_probs=24.1

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCC
Q ss_conf             838999668779799999999999978987999626-7808999999871992
Q gi|254780544|r   43 RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRAD   94 (448)
Q Consensus        43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~   94 (448)
                      .+|++|.=.--.-..=++.+..-|.++|++|+|+|. +|.-...=.+++++++
T Consensus       105 g~vVigtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d  157 (227)
T COG5012         105 GKVVIGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPD  157 (227)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             60799863562788789999999983795787438999879999999972875


No 52 
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family; InterPro: IPR012741    This entry describes a subfamily of the B12 binding domain proteins that include corrinoid proteins specific to four different, mutually non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.; GO: 0031419 cobalamin binding, 0050897 cobalt ion binding, 0015948 methanogenesis.
Probab=75.43  E-value=3.1  Score=20.76  Aligned_cols=52  Identities=27%  Similarity=0.387  Sum_probs=35.6

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             99668779799999999999978987999626-780899999987199258988654
Q gi|254780544|r   47 IGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISAS  102 (448)
Q Consensus        47 Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTaS  102 (448)
                      +=-|-|--+   ++.+++=|.++|++|+|+|. +|.-.+==-+++.+.. -+||+.|
T Consensus        94 ~EGDvHdIG---k~iV~~mL~~~GF~v~DLGrDVp~~~vvE~v~~~~~~-kv~l~~s  146 (201)
T TIGR02370        94 AEGDVHDIG---KNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPE-KVMLTGS  146 (201)
T ss_pred             EEECCCHHH---HHHHHHHHHCCCCEEEECCCCCCCCCCEEHHEEECCC-EEEEEEC
T ss_conf             620311101---3799998750696688737555552011012100786-6788631


No 53 
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=74.89  E-value=6.1  Score=18.98  Aligned_cols=208  Identities=18%  Similarity=0.217  Sum_probs=103.7

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEE--CC
Q ss_conf             799838999668779799999999999978987999-626780899999987199258988654777520125640--36
Q gi|254780544|r   40 KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFI-LGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLF--GP  116 (448)
Q Consensus        40 ~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~-~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~--~~  116 (448)
                      ...++|+||.-.-.-+..+...+.+.|...|++|-+ .|.-.|++++-|++.-+.+    +.     +||+|--.+  .+
T Consensus        30 ~~~~~I~VgsK~~tE~~IL~~m~~~lle~~~~kv~~~~~lG~t~v~~~Al~~G~ID----iY-----pEYTGt~~~~~lk  100 (300)
T COG1732          30 SAAKTIVVGSKIFTEQYILGNILKQLLEKNGIKVEDKTGLGGTAVVRNALKSGDID----IY-----PEYTGTALFSFLK  100 (300)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCC----EE-----EEECCHHHHHHCC
T ss_conf             35788798347783889999999999986599145416888529999999759877----68-----5432314566345


Q ss_pred             CCCCCCHHHHH---HHHHHHHCCCCCCCCCCCCCCCCCC-----CCCHHHHH----HHHHHHCCCCHHHCCCCEEEEEEC
Q ss_conf             54567835789---9999961566433445433222111-----35425666----887763263102118966999844
Q gi|254780544|r  117 DGYKVSTDIED---RIETLLEDDLTSYLSCYDSIGHAKR-----VDGVHDRY----IEHVKRTLPRDVTLQGLRIVVDCA  184 (448)
Q Consensus       117 ~G~~i~~~~~~---~Ie~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Y----i~~l~~~~~~~~~~~~lkvvvD~~  184 (448)
                      .-.+...+.++   .+++.+.+...  +...+..+.-..     ..+..+.|    +.++..+.      ..++...|..
T Consensus       101 ~~~~~~~dp~~~y~~vK~~~~k~~~--l~wl~p~~~nNTyA~av~~~~A~~~~i~TiSDLak~~------~~l~~g~~~e  172 (300)
T COG1732         101 KDPPASKDPKKVYETVKKLDAKQFK--LVWLKPAGFNNTYALAVRKDVAEKYNLETISDLAKHS------NQLKLGADSE  172 (300)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCC--EEEECCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHH------HHCEECCCHH
T ss_conf             6764547989999999998886079--7896546877605899619889881981699999866------5346227842


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCC--CC--CCCCCCCCCCC
Q ss_conf             665433332221233322222223222355774422101377764200234303675315521--00--01332237553
Q gi|254780544|r  185 NGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGD--RV--IIVDEKGAIVN  260 (448)
Q Consensus       185 ~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~D--R~--~ivd~~G~~i~  260 (448)
                      .=--..-++.+-+.+|.+.     .|+  ....+++     -..+.+++...|++.++-.||-  +.  .+..++-+++.
T Consensus       173 F~~R~DG~~~l~k~Yg~~~-----~~~--~~~m~~g-----l~y~Al~~g~~d~~~~YsTDg~I~~~~L~VLkDDK~~fP  240 (300)
T COG1732         173 FAERADGLPALQKAYGFDF-----KPD--LRTMDGG-----LTYQALKNGTVDAADAYSTDGRIAAYGLKVLKDDKGFFP  240 (300)
T ss_pred             HHCCCCCCHHHHHHHCCCC-----CCC--CEECCCH-----HHHHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCCCCC
T ss_conf             3136512289999848766-----887--4433815-----899998749977676314552212268579706876799


Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             3113567777655320
Q gi|254780544|r  261 GDQIMALIAREWMSHS  276 (448)
Q Consensus       261 ~d~~~~lla~~ll~~~  276 (448)
                      +=+...++-+.+++++
T Consensus       241 ~Y~~apvvre~vlk~~  256 (300)
T COG1732         241 PYQAAPVVREEVLKKH  256 (300)
T ss_pred             CCCCCCEECHHHHHHC
T ss_conf             8765640218777679


No 54 
>PRK09414 glutamate dehydrogenase; Provisional
Probab=74.80  E-value=6.1  Score=18.96  Aligned_cols=149  Identities=17%  Similarity=0.146  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHHH--HHHHHHHC-CCCCCEEEEECCCCCHH----HHHHHHHHHHHHC-CCE--E--EEECCCCHHHHHH
Q ss_conf             7889999999999--99999723-79983899966877979----9999999999978-987--9--9962678089999
Q gi|254780544|r   19 PITPNFMMRIGIA--VGYLFRGK-KKHRRVVIGKDTRLSGY----MLENSLVAGFTAA-GMD--A--FILGPIPSPAVAM   86 (448)
Q Consensus        19 ~~t~~~v~~i~~a--~~~~~~~~-~~~~~vvVg~D~R~~s~----~~~~~~~~gl~~~-G~~--V--~~~g~~ptP~l~~   86 (448)
                      +.|.+.+..|+.-  |-+.+.+. ..+.+==+-+|.+-.|.    .|++.++.-|... |-+  |  =|+|.-+ -.+.|
T Consensus        97 ~V~~~evk~La~~mt~KnAl~~lP~GGgKGGi~~DPk~~S~~El~R~~r~f~~eL~~~IGp~~DVPApDigt~~-rem~w  175 (446)
T PRK09414         97 SVNLSILKFLGFEQIFKNALTGLPMGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGG-REIGY  175 (446)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHH
T ss_conf             88999999999999999886077767766651328877999999999999999999860976698786578778-89999


Q ss_pred             HHHHHC----CCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             998719----9258988654777520125640365456783578999999615664334454332221113542566688
Q gi|254780544|r   87 LTRSLR----ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIE  162 (448)
Q Consensus        87 a~~~~~----~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~  162 (448)
                      ...+++    ...|+ +|.  -|.++.|        . ..+.+                  ....|        .-.+.+
T Consensus       176 m~d~Y~~i~~~~~gv-~TG--Kp~~~GG--------s-~gR~e------------------ATG~G--------v~y~~~  217 (446)
T PRK09414        176 MFGQYKRLTNRFEGV-LTG--KGLSFGG--------S-LIRPE------------------ATGYG--------LVYFAE  217 (446)
T ss_pred             HHHHHHHHCCCCCCE-ECC--CCCCCCC--------C-CCCCC------------------CHHHH--------HHHHHH
T ss_conf             999999854987735-689--9721068--------8-68765------------------32289--------999999


Q ss_pred             HHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77632631021189669998446654333322212333222222232
Q gi|254780544|r  163 HVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDK  209 (448)
Q Consensus       163 ~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~  209 (448)
                      .+.+....  .+++-+++|.. .|-.+.++.+.|.++|+.++.+.+.
T Consensus       218 e~l~~~g~--~l~gk~v~IqG-fGNVg~~aA~~l~e~GakvVavSDs  261 (446)
T PRK09414        218 EMLKARGD--SFEGKTVVVSG-SGNVAIYAIEKAMELGAKVVTCSDS  261 (446)
T ss_pred             HHHHHCCC--CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99997499--95788799977-7779999999999769979999837


No 55 
>TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785   Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt.
Probab=73.71  E-value=4.2  Score=20.00  Aligned_cols=57  Identities=19%  Similarity=0.429  Sum_probs=43.2

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH---------HHHHHHCCCEEEEEEEC
Q ss_conf             389996687797999999999999789879996267808999---------99987199258988654
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVA---------MLTRSLRADVGVMISAS  102 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~---------~a~~~~~~~gGI~iTaS  102 (448)
                      +|.+|+|.  .+-.+++.+..=|...|++|+|.|..|+--..         -++.....+.||.|.+.
T Consensus         1 kiaiGsDH--aGf~Lke~ik~fL~~~g~kvid~GT~~~ertdYP~YAk~V~~av~~g~~~~GILiCgT   66 (143)
T TIGR01120         1 KIAIGSDH--AGFILKEKIKEFLEDKGFKVIDVGTLASERTDYPDYAKEVVRAVLEGKAERGILICGT   66 (143)
T ss_pred             CEEEECCC--CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             93550586--5623478899986139857987537886763660689999999744876676688505


No 56 
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=72.66  E-value=6.9  Score=18.64  Aligned_cols=57  Identities=25%  Similarity=0.500  Sum_probs=37.5

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CH-----HHHHHH----HHHHCCCEEEEEEEC
Q ss_conf             389996687797999999999999789879996267-80-----899999----987199258988654
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPI-PS-----PAVAML----TRSLRADVGVMISAS  102 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~-pt-----P~l~~a----~~~~~~~gGI~iTaS  102 (448)
                      +|.||+|.-  +..++..+..=|.+.|.+|+|+|.. ++     |-....    +..-.++.||.|.+.
T Consensus         2 kIaig~Dha--g~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGT   68 (151)
T COG0698           2 KIAIGSDHA--GYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGT   68 (151)
T ss_pred             CEEEECCCC--CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             279974753--3779999999999789779963664787775508999999999974787746998157


No 57 
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=66.90  E-value=9.2  Score=17.88  Aligned_cols=127  Identities=21%  Similarity=0.339  Sum_probs=63.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHH-
Q ss_conf             8779799999999999978987999626780899999987199258988654777520125640365456783578999-
Q gi|254780544|r   51 TRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRI-  129 (448)
Q Consensus        51 ~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~I-  129 (448)
                      .|..+..+...+.+-....|..|+.+|-.| .++.-+..++...-|+.|.++|++              .+++++++.| 
T Consensus        89 eRV~G~DL~~~Ll~~a~~~g~~vfllG~~p-~v~~~a~~~l~~~y~l~IvG~~~G--------------yf~~~e~~~ii  153 (246)
T PRK03692         89 SRVAGADLWEALMARAGKEGTPVFLVGGKP-EVLAQTEAKLRAQWNVNIVGSQDG--------------YFTPEQRQALF  153 (246)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEECCCH-HHHHHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHHHH
T ss_conf             752719999999998887498379842888-999999999998749869984699--------------99837779999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9996156643344543322211135425666887763263102118966999844665433332221233322
Q gi|254780544|r  130 ETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGAD  202 (448)
Q Consensus       130 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~  202 (448)
                      +++-+....-..   =.+|..     -.+.++..........+.. +.--.+|..-|. ..-+|+++.++|.+
T Consensus       154 ~~I~~s~pdil~---VglG~P-----kQE~wi~~~~~~l~~~v~i-gVGgsfD~~aG~-v~RAP~w~q~lgLE  216 (246)
T PRK03692        154 ERIHASGAKIVT---VAMGSP-----KQEIFMRDCRLVHPDALYM-GVGGTYDVFTGH-VKRAPKIWQNLGLE  216 (246)
T ss_pred             HHHHHCCCCEEE---EECCCC-----HHHHHHHHHHHHCCCCEEE-ECCEEEEEECCC-CCCCCHHHHHHCCH
T ss_conf             999856999999---956981-----8999999978768987899-705688750588-06384999985839


No 58 
>PRK05568 flavodoxin; Provisional
Probab=65.37  E-value=9.8  Score=17.70  Aligned_cols=40  Identities=13%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             CCEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             8389996687797-999999999999789879996267808
Q gi|254780544|r   43 RRVVIGKDTRLSG-YMLENSLVAGFTAAGMDAFILGPIPSP   82 (448)
Q Consensus        43 ~~vvVg~D~R~~s-~~~~~~~~~gl~~~G~~V~~~g~~ptP   82 (448)
                      ++|+|-|++...+ +.++++++.|+.+.|++|......-++
T Consensus         2 ~kv~IvY~S~~GnTe~mA~~Iaegl~~~Gv~V~~~~~~~~~   42 (142)
T PRK05568          2 KKLNIIYWSGTGNTEAMANLIAEGAKENGLEVKLLNVSEAS   42 (142)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             72999998998549999999999998669839999800499


No 59 
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=65.11  E-value=10  Score=17.67  Aligned_cols=57  Identities=14%  Similarity=0.253  Sum_probs=31.6

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC---CCHHHHHHH----HHHHCCCEEEEEEEC
Q ss_conf             38999668779799999999999978987999626---780899999----987199258988654
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGP---IPSPAVAML----TRSLRADVGVMISAS  102 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~---~ptP~l~~a----~~~~~~~gGI~iTaS  102 (448)
                      +|+||.|..  +-.++..+..-|...|.+|.|+|.   +--|-..+.    +....++-||.|.+|
T Consensus         2 kI~IgsDHa--G~~lK~~l~~~L~~~g~ev~D~g~~~~~DYpd~a~~va~~V~~~~~~~GIliCGt   65 (142)
T PRK08621          2 AIIIGADKA--GFELKEVIKDYLEDNKYEVVDVTEEEGEDFVDSTLAVAKEVNKQEDNLGIVIDAY   65 (142)
T ss_pred             EEEEEECCH--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             799985873--6999999999999789987979999778816899999999976987555898788


No 60 
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=64.79  E-value=10  Score=17.63  Aligned_cols=51  Identities=18%  Similarity=0.126  Sum_probs=40.4

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             838999668779799999999999978987999626780899999987199
Q gi|254780544|r   43 RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRA   93 (448)
Q Consensus        43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~   93 (448)
                      ++|+||.-.=..+..+++.....|-..|++|-....-.+++++-++..-+.
T Consensus         1 ktI~ig~~~w~e~~i~a~i~~~~Le~~G~~V~~~~~~~~~~~~~al~~G~i   51 (256)
T pfam04069         1 KTIVIGSKNWTEQEILANIAAQLLEALGYVVELVGLGSTAVLFAALASGDI   51 (256)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCC
T ss_conf             929992688628999999999999976981698547870899999976997


No 61 
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=61.15  E-value=5.4  Score=19.33  Aligned_cols=39  Identities=28%  Similarity=0.511  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             1233322222223222355774422101377764200234303675315
Q gi|254780544|r  196 FWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDG  244 (448)
Q Consensus       196 l~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~Dg  244 (448)
                      |-+.|.+.+++|.|          .+.++.++.+.+|+.++..|+++.|
T Consensus        77 Fa~aGA~~I~vH~E----------a~~h~~R~l~~Ik~~G~~AG~v~NP  115 (216)
T TIGR01163        77 FAEAGADIITVHAE----------ATEHIHRLLQLIKELGAKAGIVLNP  115 (216)
T ss_pred             HHHHCCCEEEEECC----------CCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf             99708998998437----------7626799999999718970688679


No 62 
>TIGR00863 P2X cation transporter protein; InterPro: IPR001429   P2X purinoceptors are cell membrane ion channels, gated by adenosine 5'-triphosphate (ATP) and other nucleotides; they have been found to be widely expressed on mammalian cells, and, by means of their functional properties, can be differentiated into three sub-groups. The first group is almost equally well activated by ATP and its analogue alphabetamethyleneATP, whereas, the second group is not activated by the latter compound. A third type of receptor (also called P2Z) is distinguished by the fact that repeated or prolonged agonist application leads to the opening of much larger pores, allowing large molecules to traverse the cell membrane. This increased permeability rapidly leads to cell death, and lysis.   Molecular cloning studies have identified seven P2X receptor subtypes, designated P2X1-P2X7. These receptors are proteins that share 35-48% amino acid identity, and possess two putative transmembrane (TM) domains, separated by a long (~270 residues) intervening sequence, which is thought to form an extracellular loop. Around 1/4 of the residues within the loop are invariant between the cloned subtypes, including 10 characteristic cysteines.   Studies of the functional properties of heterologously expressed P2X receptors, together with the examination of their distribution in native tissues, suggests they likely occur as both homo- and heteromultimers in vivo , .   This entry represents all P2X purinoreceptor subtypes.; GO: 0004872 receptor activity, 0005216 ion channel activity, 0005524 ATP binding, 0006811 ion transport, 0016020 membrane.
Probab=61.01  E-value=7.2  Score=18.55  Aligned_cols=13  Identities=15%  Similarity=0.312  Sum_probs=6.1

Q ss_pred             CCCCCEEEEECCC
Q ss_conf             7998389996687
Q gi|254780544|r   40 KKHRRVVIGKDTR   52 (448)
Q Consensus        40 ~~~~~vvVg~D~R   52 (448)
                      ...+++||-|--+
T Consensus        16 Y~T~k~V~~rn~~   28 (377)
T TIGR00863        16 YKTPKYVLVRNKK   28 (377)
T ss_pred             CCCCEEEEEEECE
T ss_conf             4663189997032


No 63 
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=60.65  E-value=12  Score=17.16  Aligned_cols=51  Identities=27%  Similarity=0.408  Sum_probs=37.1

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH-HHHHHHHCCCEEEEEEE
Q ss_conf             99668779799999999999978987999626780899-99998719925898865
Q gi|254780544|r   47 IGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV-AMLTRSLRADVGVMISA  101 (448)
Q Consensus        47 Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l-~~a~~~~~~~gGI~iTa  101 (448)
                      +|.|.+.-+   +..++..|..+|++|+++|...||.- --++.+.+++ .|.+++
T Consensus         7 vg~D~Hd~G---~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad-~i~vSs   58 (128)
T cd02072           7 IGSDCHAVG---NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDAD-AILVSS   58 (128)
T ss_pred             ECCCHHHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEECC
T ss_conf             287653788---9999999997897298479889999999999873999-999823


No 64 
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=56.50  E-value=14  Score=16.73  Aligned_cols=56  Identities=29%  Similarity=0.394  Sum_probs=38.5

Q ss_pred             CCCEE---EEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH-HHHHHHHCCCEEEEEEE
Q ss_conf             98389---99668779799999999999978987999626780899-99998719925898865
Q gi|254780544|r   42 HRRVV---IGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV-AMLTRSLRADVGVMISA  101 (448)
Q Consensus        42 ~~~vv---Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l-~~a~~~~~~~gGI~iTa  101 (448)
                      .++|+   +|-|.+.-+   +..++..|..+|++|+++|...||.- --++.+.+++ .|-+++
T Consensus         3 r~~vvi~~~g~D~Hd~G---~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad-~igiSs   62 (137)
T PRK02261          3 KPTVVLGVIGADCHAVG---NKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDAD-AILVSS   62 (137)
T ss_pred             CCEEEEEEECCCHHHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEECC
T ss_conf             88799982188611788---9999999997897498468879999999999873999-999711


No 65 
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=56.10  E-value=14  Score=16.69  Aligned_cols=133  Identities=11%  Similarity=0.125  Sum_probs=63.8

Q ss_pred             EEEEEC------CCCHHHHHHH--HHHHCCCEEEEEEE----CCCCCC----C---------EEEEEECCCCCCCCHHHH
Q ss_conf             799962------6780899999--98719925898865----477752----0---------125640365456783578
Q gi|254780544|r   72 DAFILG------PIPSPAVAML--TRSLRADVGVMISA----SHNPYQ----D---------NGIKLFGPDGYKVSTDIE  126 (448)
Q Consensus        72 ~V~~~g------~~ptP~l~~a--~~~~~~~gGI~iTa----SHNP~~----~---------nGiK~~~~~G~~i~~~~~  126 (448)
                      +.+++|      ..+||.+||-  +..+-..-+|.+|.    +|--.+    +         --.++|..-=.|..+-..
T Consensus       128 d~LdLG~GktL~Fi~tPmlHWPDsM~TY~~edkILFS~DaFG~H~~~~~~fddevd~~~~~~ea~rYYanIl~Pf~~~V~  207 (479)
T PRK05452        128 DTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVT  207 (479)
T ss_pred             CEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             85726998468996189877887326886267568612555321227544433245687899999999998764079999


Q ss_pred             HHHHHHHHCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCC-----C
Q ss_conf             9999996156-643344543322211135425666887763263102118966999844665433332221233-----3
Q gi|254780544|r  127 DRIETLLEDD-LTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWEL-----G  200 (448)
Q Consensus       127 ~~Ie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~l-----g  200 (448)
                      ++|+++..-. ...........-.......+.+.|.++-...     .....-|++|+|+|.+...+..|.+.+     |
T Consensus       208 ~~l~kl~~l~L~I~~IaPsHGpI~R~~~~~ii~~Y~~Wa~~~-----~~~kv~IvY~SmyGnT~~MA~aIA~Gl~~~~~g  282 (479)
T PRK05452        208 PKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADY-----QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPR  282 (479)
T ss_pred             HHHHHHHHCCCCHHEEECCCCCEEECCHHHHHHHHHHHHHCC-----CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             999999737998424875788233179999999999997447-----778289999665030999999999999851799


Q ss_pred             CCCCCCCCC
Q ss_conf             222222232
Q gi|254780544|r  201 ADVVVIGDK  209 (448)
Q Consensus       201 ~~~~~i~~~  209 (448)
                      +++..+|..
T Consensus       283 v~V~~~n~~  291 (479)
T PRK05452        283 VAVKIFNVA  291 (479)
T ss_pred             CEEEEEECC
T ss_conf             449999746


No 66 
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=54.19  E-value=15  Score=16.50  Aligned_cols=29  Identities=31%  Similarity=0.298  Sum_probs=17.9

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96699984466543333222123332222
Q gi|254780544|r  176 GLRIVVDCANGASYKVAPEVFWELGADVV  204 (448)
Q Consensus       176 ~lkvvvD~~~G~~~~~~~~il~~lg~~~~  204 (448)
                      +.|+++-..||....-..++|.+-|+.++
T Consensus       146 ~ck~IvEgANgP~T~eAd~iL~~kGI~vi  174 (254)
T cd05313         146 GCKYVAEGANMPCTAEAIEVFRQAGVLFA  174 (254)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHCCCEEE
T ss_conf             98299865889998789999998898896


No 67 
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=52.95  E-value=16  Score=16.37  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCC
Q ss_conf             566688776326310211896699984466543
Q gi|254780544|r  157 HDRYIEHVKRTLPRDVTLQGLRIVVDCANGASY  189 (448)
Q Consensus       157 ~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~  189 (448)
                      .+.|++.+.+.++........|+++|-+.|+++
T Consensus        98 a~~Yid~i~~~ip~~~~~~~vRt~LDvGCGVAS  130 (506)
T pfam03141        98 ADAYIDFLAQVIPLIAWGGRVRTALDVGCGVAS  130 (506)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEC
T ss_conf             999999999856755579856899976887210


No 68 
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=52.65  E-value=16  Score=16.34  Aligned_cols=96  Identities=15%  Similarity=0.104  Sum_probs=42.5

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC---CCCCHH---HHH--
Q ss_conf             100013322375533113567777655320022343332211360044432001211111233---211011---111--
Q gi|254780544|r  247 DRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEV---GDRYIM---EYM--  318 (448)
Q Consensus       247 DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~v---G~k~i~---~~~--  318 (448)
                      +++.+.+..|+.+..|.+..  |         -|..-....=|+..--++|++.|.++.++.-   +|..=.   +.+  
T Consensus       142 ~~f~l~t~~g~~i~~d~lil--A---------tGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~~~l~g  210 (408)
T COG2081         142 SGFRLDTSSGETVKCDSLIL--A---------TGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFLERLAG  210 (408)
T ss_pred             CEEEEECCCCCEEECCEEEE--E---------CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf             55899859998898048999--2---------288677878998402689997598405686655772478789987437


Q ss_pred             ---HCCCCEEC----CCCCCEEEEECCCCCCCCCCCCCHHHH
Q ss_conf             ---02897001----346623653010001444233202466
Q gi|254780544|r  319 ---KNNGFNVG----GEQSGHIILSDYGSTGDGLVAALQVLR  353 (448)
Q Consensus       319 ---~~~~~~~g----~E~sg~~~~~~~~~~~Dgi~a~l~~le  353 (448)
                         +.-...+.    ....|-+.|.+|+..+-+++.+-....
T Consensus       211 ls~~~v~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~  252 (408)
T COG2081         211 LSLKSVPLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWR  252 (408)
T ss_pred             CCCCCEEEEEECCCCCEEECCEEEEECCCCHHHHHHHHHHHH
T ss_conf             865653789844888133045679805776799999999998


No 69 
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268   These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=52.57  E-value=4.8  Score=19.59  Aligned_cols=38  Identities=13%  Similarity=0.007  Sum_probs=27.8

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             79983899966877979999999999997898799962
Q gi|254780544|r   40 KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILG   77 (448)
Q Consensus        40 ~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g   77 (448)
                      +.+..++|+-=.-.=|..--..+|.-+.+.|++++--|
T Consensus        22 G~G~~~~iAGPCsvEs~eq~~~~A~~vk~~Ga~~LRGG   59 (262)
T TIGR01361        22 GEGSPIVIAGPCSVESEEQIVETARFVKEAGAKILRGG   59 (262)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf             38478998648774887999999999986674043066


No 70 
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=52.15  E-value=17  Score=16.29  Aligned_cols=88  Identities=11%  Similarity=0.219  Sum_probs=50.6

Q ss_pred             HHHH-HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE-ECC--C---CHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             9999-9723799838999668779799999999999978987999-626--7---8089999998719925898865477
Q gi|254780544|r   32 VGYL-FRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFI-LGP--I---PSPAVAMLTRSLRADVGVMISASHN  104 (448)
Q Consensus        32 ~~~~-~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~-~g~--~---ptP~l~~a~~~~~~~gGI~iTaSHN  104 (448)
                      +|.| ++.+.+.+..+|+||.+..+  .-.-+..-=...|++|+. .+.  -   |.-..+-|+.+-+..          
T Consensus       122 LA~~ll~kk~~~kvLLva~D~yRPA--A~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~----------  189 (439)
T TIGR00959       122 LALYLLKKKEGKKVLLVACDLYRPA--AIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQALEEAKEN----------  189 (439)
T ss_pred             HHHHHHHHHCCCCEEEEEHHCCCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC----------
T ss_conf             9999999863897034032103478--9999999767528871100478889887789999999999974----------


Q ss_pred             CCCCEEEEEECCCCC-CCCHHHHHHHHHHHH
Q ss_conf             752012564036545-678357899999961
Q gi|254780544|r  105 PYQDNGIKLFGPDGY-KVSTDIEDRIETLLE  134 (448)
Q Consensus       105 P~~~nGiK~~~~~G~-~i~~~~~~~Ie~~~~  134 (448)
                         -|-+-++|--|. +|+....+++..+-+
T Consensus       190 ---~~D~vI~DTAGRL~ID~~LM~EL~~iK~  217 (439)
T TIGR00959       190 ---GFDVVIVDTAGRLQIDEELMEELAEIKE  217 (439)
T ss_pred             ---CCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             ---8978997267512555999999999988


No 71 
>PRK10834 hypothetical protein; Provisional
Probab=52.10  E-value=17  Score=16.29  Aligned_cols=96  Identities=19%  Similarity=0.182  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE----EEE-ECCC
Q ss_conf             03358601550687788999999999999999723799838999668779799999999999978987----999-6267
Q gi|254780544|r    5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMD----AFI-LGPI   79 (448)
Q Consensus         5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~----V~~-~g~~   79 (448)
                      .+||+.+..   ....++.+..|+-.|+.-|-+  ++-+.++|+.|++..+-.=-.+.-.-|.+.|+.    +.| .|.-
T Consensus        50 VLGtak~~~---~G~pn~~~~~RldaA~~LY~~--GKv~~iLvSGDn~~~~YnEp~~Mk~~Li~~GVP~e~I~~D~AGfr  124 (239)
T PRK10834         50 VLGTAKYYR---TGVINQYYRYRIQGAINAYNS--GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPADIVLDYAGFR  124 (239)
T ss_pred             EECCCCCCC---CCCCCHHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHEECCCCCCC
T ss_conf             945764678---998198999999999999986--997489866899988898289999999985998999505667654


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEE-CCCC
Q ss_conf             8089999998719925898865-4777
Q gi|254780544|r   80 PSPAVAMLTRSLRADVGVMISA-SHNP  105 (448)
Q Consensus        80 ptP~l~~a~~~~~~~gGI~iTa-SHNP  105 (448)
                      +.-.+.-|-+-++.+--++||. -|||
T Consensus       125 T~DS~vRAk~VF~~~~~iIVTQ~FH~~  151 (239)
T PRK10834        125 TLDSIVRTRKVFDTNDFIIITQRFHCE  151 (239)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             899999999980998289994601389


No 72 
>PRK02676 consensus
Probab=51.71  E-value=17  Score=16.25  Aligned_cols=27  Identities=11%  Similarity=0.155  Sum_probs=17.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             654333322212333222222232223
Q gi|254780544|r  186 GASYKVAPEVFWELGADVVVIGDKPNG  212 (448)
Q Consensus       186 G~~~~~~~~il~~lg~~~~~i~~~pd~  212 (448)
                      ++++..=.++|+++|.+...+...-|.
T Consensus         8 AS~SprR~~lL~~~g~~f~v~~~~idE   34 (196)
T PRK02676          8 ASASPARRRLLQTVGIDPIVQPSHFDE   34 (196)
T ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             479999999999779983997899998


No 73 
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=51.43  E-value=17  Score=16.22  Aligned_cols=50  Identities=12%  Similarity=0.057  Sum_probs=22.0

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCC---E-EEE-E--CCC-CHHHHHHHHHHHCC
Q ss_conf             83899966877979999999999997898---7-999-6--267-80899999987199
Q gi|254780544|r   43 RRVVIGKDTRLSGYMLENSLVAGFTAAGM---D-AFI-L--GPI-PSPAVAMLTRSLRA   93 (448)
Q Consensus        43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~---~-V~~-~--g~~-ptP~l~~a~~~~~~   93 (448)
                      .+.++++...- =...+...+.++.++|+   + |.. +  |.- .-..++++...+++
T Consensus       100 ~P~~v~~T~~D-~~~~~~~~aR~~~~~G~~~gD~v~v~~~ygl~~Gg~~~~~g~~~lGa  157 (445)
T TIGR03335       100 TPKSFFLTWDD-WKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGM  157 (445)
T ss_pred             CCEEECCCHHH-HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             82076028899-99999999999987799988789993166776406899999998499


No 74 
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=50.36  E-value=7.1  Score=18.57  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=18.7

Q ss_pred             CCCEEEEECC-CCHHHHHHHHHHHCCC
Q ss_conf             8987999626-7808999999871992
Q gi|254780544|r   69 AGMDAFILGP-IPSPAVAMLTRSLRAD   94 (448)
Q Consensus        69 ~G~~V~~~g~-~ptP~l~~a~~~~~~~   94 (448)
                      .|+.|++++. ++-|........+||+
T Consensus        13 ~GirVld~~~~~agP~~~~~LadlGAe   39 (405)
T PRK03525         13 AGLRVVFSGIEIAGPFAGQMFAEWGAE   39 (405)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf             998899927720899999999984993


No 75 
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=49.63  E-value=18  Score=16.05  Aligned_cols=80  Identities=20%  Similarity=0.285  Sum_probs=48.0

Q ss_pred             CCCCCEEEE-----EC-----CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE-EECCCCCHHHHHHHHHHHHH---HCCC
Q ss_conf             335860155-----06-----8778899999999999999972379983899-96687797999999999999---7898
Q gi|254780544|r    6 FGTDGIRGK-----SN-----TFPITPNFMMRIGIAVGYLFRGKKKHRRVVI-GKDTRLSGYMLENSLVAGFT---AAGM   71 (448)
Q Consensus         6 FGt~GiRG~-----~~-----~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvV-g~D~R~~s~~~~~~~~~gl~---~~G~   71 (448)
                      |+..|+||+     .+     .+|++|+-+..|-.=+.    .++. .++-| -.|.            ..++   ..-+
T Consensus        59 lsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~----~N~~-~~~~v~~~dA------------n~lm~~~~~~f  121 (376)
T PRK04338         59 LSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLE----LNGL-ENAEVFNEDA------------NVLLHENERKF  121 (376)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH----HHCC-CCEEEECCCH------------HHHHHHCCCCC
T ss_conf             67654999999872799879995699999999999999----8299-8269813248------------99998378758


Q ss_pred             EEEEECC--CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             7999626--780899999987199258988654
Q gi|254780544|r   72 DAFILGP--IPSPAVAMLTRSLRADVGVMISAS  102 (448)
Q Consensus        72 ~V~~~g~--~ptP~l~~a~~~~~~~gGI~iTaS  102 (448)
                      +++|+..  +|+|.+--|++...-.|=+.|||.
T Consensus       122 D~IDlDPfGSp~pflDsAi~~v~~~GlL~vTaT  154 (376)
T PRK04338        122 DVVDIDPFGSPAPFLDSAIRALRRGGLLCVTAT  154 (376)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf             778678999920879999998403988999946


No 76 
>pfam06574 FAD_syn FAD synthetase. This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.
Probab=48.89  E-value=19  Score=15.98  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=14.0

Q ss_pred             EEEEECCCCCCC----CCCCCCCCCCCCCCCCCC
Q ss_conf             999844665433----332221233322222223
Q gi|254780544|r  179 IVVDCANGASYK----VAPEVFWELGADVVVIGD  208 (448)
Q Consensus       179 vvvD~~~G~~~~----~~~~il~~lg~~~~~i~~  208 (448)
                      |..|+..|-.+.    .+.++.+..|.++..+..
T Consensus       113 vG~df~FG~~r~G~~~~L~~~~~~~g~~v~~i~~  146 (158)
T pfam06574       113 VGFDFRFGKGRAGDVELLKELGAKYGFEVTVVPP  146 (158)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf             7365015799987999999999876948999698


No 77 
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=48.60  E-value=19  Score=15.95  Aligned_cols=89  Identities=9%  Similarity=0.046  Sum_probs=47.4

Q ss_pred             CEEEE---ECCCCCHHHHHHHHHHHHHHCCCEEEE-EC-CCCHHH--------------HHHHHHHHCCCEEEEEEECCC
Q ss_conf             38999---668779799999999999978987999-62-678089--------------999998719925898865477
Q gi|254780544|r   44 RVVIG---KDTRLSGYMLENSLVAGFTAAGMDAFI-LG-PIPSPA--------------VAMLTRSLRADVGVMISASHN  104 (448)
Q Consensus        44 ~vvVg---~D~R~~s~~~~~~~~~gl~~~G~~V~~-~g-~~ptP~--------------l~~a~~~~~~~gGI~iTaSHN  104 (448)
                      ++-+.   +|.+..-......+..-....|+.... +. .+|..+              ++-|+|. .-.|+|.+++...
T Consensus       511 ~l~l~~~pf~l~~ll~~v~~~~~~~a~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsNAiKF-T~~G~V~l~~~~~  589 (912)
T PRK11466        511 NVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSNALRF-TDEGSIVLRSRTD  589 (912)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEC
T ss_conf             138861156899999999999999998379789997279998608635889999999999987061-8996799999986


Q ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             7520125640365456783578999999615
Q gi|254780544|r  105 PYQDNGIKLFGPDGYKVSTDIEDRIETLLED  135 (448)
Q Consensus       105 P~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~  135 (448)
                      ...+. |.+ ...|..|+++....|.+.|.+
T Consensus       590 ~~~l~-~~V-~DTGiGI~~e~~~~IF~~F~Q  618 (912)
T PRK11466        590 GEQWL-VEV-EDSGCGIDPAKLAEIFQPFVQ  618 (912)
T ss_pred             CCEEE-EEE-EECCCCCCHHHHHHHHCCCCC
T ss_conf             97899-998-508999999999988447615


No 78 
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.84  E-value=21  Score=15.69  Aligned_cols=82  Identities=26%  Similarity=0.303  Sum_probs=50.3

Q ss_pred             CCCCCEEEE----------ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH--CCCEE
Q ss_conf             335860155----------068778899999999999999972379983899966877979999999999997--89879
Q gi|254780544|r    6 FGTDGIRGK----------SNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTA--AGMDA   73 (448)
Q Consensus         6 FGt~GiRG~----------~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~--~G~~V   73 (448)
                      |...||||+          +--+|++|+-+.-|-.=+.    -+......++-.|..           .-|..  ..++|
T Consensus        60 lsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~----~N~~~~~~v~n~DAN-----------~lm~~~~~~fd~  124 (380)
T COG1867          60 LSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR----LNSGEDAEVINKDAN-----------ALLHELHRAFDV  124 (380)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----HCCCCCCEEECCHHH-----------HHHHHCCCCCCE
T ss_conf             55533667545342576179971589899999999998----347666325534289-----------998725887637


Q ss_pred             EEECC--CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             99626--780899999987199258988654
Q gi|254780544|r   74 FILGP--IPSPAVAMLTRSLRADVGVMISAS  102 (448)
Q Consensus        74 ~~~g~--~ptP~l~~a~~~~~~~gGI~iTaS  102 (448)
                      +|+..  +|.|.+--|.+..+-.|=+.|||-
T Consensus       125 IDiDPFGSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         125 IDIDPFGSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             EECCCCCCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf             8138999972679999997222988999851


No 79 
>PRK03098 consensus
Probab=42.37  E-value=24  Score=15.35  Aligned_cols=27  Identities=11%  Similarity=0.031  Sum_probs=16.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             543333222123332222222322235
Q gi|254780544|r  187 ASYKVAPEVFWELGADVVVIGDKPNGI  213 (448)
Q Consensus       187 ~~~~~~~~il~~lg~~~~~i~~~pd~~  213 (448)
                      +++..=.++|+.+|++...+...-|..
T Consensus         4 S~S~~R~~lL~~~gi~f~~~~~~iDE~   30 (185)
T PRK03098          4 SGSPRRKELLELAGVPFEIIVSEVEET   30 (185)
T ss_pred             CCCHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf             699999999986899959977999999


No 80 
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=41.50  E-value=24  Score=15.27  Aligned_cols=27  Identities=15%  Similarity=0.352  Sum_probs=16.0

Q ss_pred             CEEEEE-EECCCHHHHHHHHHHHHHHHH
Q ss_conf             279999-615998999999999999987
Q gi|254780544|r  418 SLIRIM-AEGDDLSRIKRIVDDLAKVIP  444 (448)
Q Consensus       418 p~iriy-~Ea~~~~~~~~l~~~~~~~i~  444 (448)
                      |.++|+ .|+.+.+..+.|.+++.+.+.
T Consensus         2 P~v~V~l~eGRt~EQK~~lv~evTeav~   29 (60)
T PRK02289          2 PFVTIDLFEGRSQEQKNALAREVTEVVS   29 (60)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             8599998259999999999999999999


No 81 
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=39.35  E-value=26  Score=15.06  Aligned_cols=34  Identities=21%  Similarity=0.093  Sum_probs=17.6

Q ss_pred             CCCEEEEEECCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf             89669998446654333----32221233322222223
Q gi|254780544|r  175 QGLRIVVDCANGASYKV----APEVFWELGADVVVIGD  208 (448)
Q Consensus       175 ~~lkvvvD~~~G~~~~~----~~~il~~lg~~~~~i~~  208 (448)
                      +.+-|..|+..|..+.-    +.++.++.|.++..+..
T Consensus       114 k~ivvG~Df~FG~~r~G~~~~L~~~~~~~g~~v~~v~~  151 (303)
T PRK05627        114 KFVVVGDDFRFGKKRAGDFELLQEAGKEFGFEVEVVPE  151 (303)
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCC
T ss_conf             49997577333678888999999999874961897756


No 82 
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=38.59  E-value=23  Score=15.40  Aligned_cols=12  Identities=8%  Similarity=0.249  Sum_probs=4.3

Q ss_pred             HHHHHHCCCCCC
Q ss_conf             444320012111
Q gi|254780544|r  293 LERFIAGLGLSL  304 (448)
Q Consensus       293 i~~~a~~~g~~v  304 (448)
                      +|.+++++|.++
T Consensus       136 ~D~~a~~~g~~i  147 (338)
T PRK05788        136 VDTIAKQLNARI  147 (338)
T ss_pred             CHHHHHHCCCEE
T ss_conf             034455339760


No 83 
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=38.53  E-value=12  Score=17.08  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             HHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7632631021189669998446654333322212333222222
Q gi|254780544|r  164 VKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVI  206 (448)
Q Consensus       164 l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i  206 (448)
                      |...++.....++-+||+-|.+|.=+..+...|.+.|.++..+
T Consensus        44 L~~~~~~~~~~k~~~ivl~C~~G~RS~~AA~~L~~~G~~v~~L   86 (95)
T cd01534          44 LVQETDHFAPVRGARIVLADDDGVRADMTASWLAQMGWEVYVL   86 (95)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             8777654246689839998599987999999999869976995


No 84 
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700   The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=38.42  E-value=18  Score=16.12  Aligned_cols=47  Identities=21%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             EE--EEECCCCCHHHHHHHHHHHHHHCCCEEEEEC----------CCCHHH----HHHHH--HHHCCCEEEEEE
Q ss_conf             89--9966877979999999999997898799962----------678089----99999--871992589886
Q gi|254780544|r   45 VV--IGKDTRLSGYMLENSLVAGFTAAGMDAFILG----------PIPSPA----VAMLT--RSLRADVGVMIS  100 (448)
Q Consensus        45 vv--Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g----------~~ptP~----l~~a~--~~~~~~gGI~iT  100 (448)
                      |+  -+||+-         +|+.+.+.|+||++.|          ..+.|+    +-|.+  -+.|+.-...||
T Consensus        19 iv~lTAYD~~---------~A~~~~~~Gv~viLVGDSLgM~~lg~~~Tl~vsv~~m~yHT~AV~rGa~~~liv~   83 (267)
T TIGR00222        19 IVALTAYDYA---------FAKLFEDAGVDVILVGDSLGMVVLGLDSTLPVSVADMIYHTKAVKRGAPNALIVT   83 (267)
T ss_pred             EEEECHHHHH---------HHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             7875266789---------9999974798089973211066604477611018888878899854798734663


No 85 
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632   Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families.    This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=38.30  E-value=14  Score=16.76  Aligned_cols=97  Identities=16%  Similarity=0.186  Sum_probs=56.7

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCC--CCCCCCCCHHHHHHCCCCE
Q ss_conf             10001332237553311356777765532002234333221136004443200121111--1233211011111028970
Q gi|254780544|r  247 DRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLK--RTEVGDRYIMEYMKNNGFN  324 (448)
Q Consensus       247 DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~--~t~vG~k~i~~~~~~~~~~  324 (448)
                      .|++++|.+   +.++++.+++.+=    -..-|+-+|.+-.-=..+.++|++||+=.+  |..|||.       ..+..
T Consensus       187 ~~~f~~dkq---v~a~~vAa~v~EP----vQGEGGFivp~k~fv~a~~~~C~ehgiVfiADEvQtGFA-------RTG~~  252 (427)
T TIGR00700       187 EALFVADKQ---VEAENVAAVVIEP----VQGEGGFIVPAKEFVAAVLDLCKEHGIVFIADEVQTGFA-------RTGKL  252 (427)
T ss_pred             HHHHHHCCC---CCCCCEEEEEEEC----CCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCC-------HHCCC
T ss_conf             983121033---2501043789732----247887333858899999997543875899725456800-------00211


Q ss_pred             ECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf             0134662365301000144423320246677755888899998
Q gi|254780544|r  325 VGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICH  367 (448)
Q Consensus       325 ~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~  367 (448)
                      |+.|+          ...||+-.=|.-..---.-|.|||-++-
T Consensus       253 FA~eH----------~~~dGl~PDLit~aKslA~GlPLSgV~G  285 (427)
T TIGR00700       253 FAIEH----------YDDDGLKPDLITVAKSLADGLPLSGVVG  285 (427)
T ss_pred             EEEEE----------CCCCCCCCCHHHHHHHHHCCCCCCHHHC
T ss_conf             25410----------0678887518878667735686211104


No 86 
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=38.13  E-value=27  Score=14.95  Aligned_cols=46  Identities=20%  Similarity=0.370  Sum_probs=20.5

Q ss_pred             HHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCC---CCCCCCCC
Q ss_conf             666887763263102118966999844665433332221233---32222222
Q gi|254780544|r  158 DRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWEL---GADVVVIG  207 (448)
Q Consensus       158 ~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~l---g~~~~~i~  207 (448)
                      +.+++.+.+...    .+.+-+..|...|....--.+.|+.+   |.+++.+.
T Consensus       104 ~~Fv~~lv~~l~----~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~  152 (304)
T COG0196         104 EEFVELLVEKLN----VKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVP  152 (304)
T ss_pred             HHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEEC
T ss_conf             899999984458----7289993364168888898999997355785399945


No 87 
>PRK13055 putative lipid kinase; Reviewed
Probab=38.02  E-value=23  Score=15.37  Aligned_cols=33  Identities=12%  Similarity=0.156  Sum_probs=18.2

Q ss_pred             EEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf             530100014442332024667775588889999865642
Q gi|254780544|r  334 ILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEY  372 (448)
Q Consensus       334 ~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~  372 (448)
                      .+.....-.||++..+.+      +..+..+++..+++.
T Consensus       210 ~iaP~A~~dDGllDv~iv------k~~s~~~ll~l~~~~  242 (334)
T PRK13055        210 QIAPDAKLDDGMFTLIIV------KTANLFELLHLMALI  242 (334)
T ss_pred             EECCCCCCCCCEEEEEEE------CCCCHHHHHHHHHHH
T ss_conf             168977678877999998------248999999999999


No 88 
>pfam01474 DAHP_synth_2 Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyse the first step of the shikimate pathway.
Probab=37.98  E-value=28  Score=14.93  Aligned_cols=30  Identities=13%  Similarity=0.135  Sum_probs=14.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             889999999999999997237998389996687
Q gi|254780544|r   20 ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTR   52 (448)
Q Consensus        20 ~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R   52 (448)
                      .++.-+.++-.-++.+-.   +..-|+=|-|.=
T Consensus        38 V~a~Ei~~Lr~~La~va~---G~aFlLQgGDCA   67 (437)
T pfam01474        38 VFAGEIRRLKEQLADVAR---GEAFLLQGGDCA   67 (437)
T ss_pred             CCHHHHHHHHHHHHHHHC---CCEEEEECCCCC
T ss_conf             789999999999999966---987998776545


No 89 
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=37.80  E-value=28  Score=14.91  Aligned_cols=15  Identities=13%  Similarity=0.359  Sum_probs=7.7

Q ss_pred             HHHHHHCCCCCCCCC
Q ss_conf             444320012111112
Q gi|254780544|r  293 LERFIAGLGLSLKRT  307 (448)
Q Consensus       293 i~~~a~~~g~~v~~t  307 (448)
                      +..+|++.|..+...
T Consensus       223 ia~ice~~g~D~~~V  237 (414)
T COG1004         223 IANICEKVGADVKQV  237 (414)
T ss_pred             HHHHHHHHCCCHHHH
T ss_conf             999999969899999


No 90 
>KOG2451 consensus
Probab=37.70  E-value=28  Score=14.90  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=14.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
Q ss_conf             797999999999999789879996267808999999
Q gi|254780544|r   53 LSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLT   88 (448)
Q Consensus        53 ~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~   88 (448)
                      +.+-|+.+-.... +++||.|+.-..--||....+.
T Consensus       171 FP~AMItRK~gAA-LAaGCTvVvkPs~~TPlsaLal  205 (503)
T KOG2451         171 FPAAMITRKAGAA-LAAGCTVVVKPSEDTPLSALAL  205 (503)
T ss_pred             CHHHHHHHHHHHH-HHCCCEEEECCCCCCCHHHHHH
T ss_conf             8399987677888-7548669981577884689999


No 91 
>PRK06696 uridine kinase; Validated
Probab=37.62  E-value=28  Score=14.90  Aligned_cols=51  Identities=12%  Similarity=0.073  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH--HHHHHHHHHHHHCCCEEEEE
Q ss_conf             99999999999999972379983899966877979--99999999999789879996
Q gi|254780544|r   22 PNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGY--MLENSLVAGFTAAGMDAFIL   76 (448)
Q Consensus        22 ~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~--~~~~~~~~gl~~~G~~V~~~   76 (448)
                      ..++..|+..+    .....+.+++||-|+...|-  .|+..++..|...|..|+.+
T Consensus         8 ~~~~~~~~~~i----~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v   60 (227)
T PRK06696          8 KQVVKEIANHI----LTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRA   60 (227)
T ss_pred             HHHHHHHHHHH----HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             78999999999----835999868999778998787999999999997469948997


No 92 
>pfam02706 Wzz Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.
Probab=37.61  E-value=28  Score=14.90  Aligned_cols=35  Identities=17%  Similarity=0.426  Sum_probs=30.2

Q ss_pred             CEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             65999677982279999615998999999999999
Q gi|254780544|r  407 DRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAK  441 (448)
Q Consensus       407 ~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~  441 (448)
                      +.+-|.+.+...+++|.+++.|++.+.++++.+.+
T Consensus       104 ~~l~v~~~~~t~li~Is~~~~dP~~Aa~iaN~~a~  138 (139)
T pfam02706       104 KKITVENGKDTGILTVSVTGEDPEEAARIANSIAE  138 (139)
T ss_pred             HCCEEECCCCCEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf             18279737995799999976999999999887733


No 93 
>pfam08886 GshA Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=36.28  E-value=29  Score=14.76  Aligned_cols=275  Identities=17%  Similarity=0.196  Sum_probs=115.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHH---HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             788999999999999999723-79983899966877979999---99999999789879996267808999999871992
Q gi|254780544|r   19 PITPNFMMRIGIAVGYLFRGK-KKHRRVVIGKDTRLSGYMLE---NSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRAD   94 (448)
Q Consensus        19 ~~t~~~v~~i~~a~~~~~~~~-~~~~~vvVg~D~R~~s~~~~---~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~   94 (448)
                      .++|++.....+|+-.+++.. +..++|+|==..+.-...+-   ..+...|..+|.+|..-..-  |.+.-.+ .+...
T Consensus        53 NL~~~~~~lav~a~~~~iek~~p~ak~iLiIPE~HTRN~fYleNv~~L~~il~~AG~~VrvGs~~--pei~~~~-~~~~~  129 (404)
T pfam08886        53 NLNPEFLPLAVQAAMAAIEKICPDAKNLLLIPENHTRNTFYLENVAALKEILRQAGLNVRIGSLD--PEITEPT-TLELP  129 (404)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC--CCCCCCE-EEECC
T ss_conf             69978999999999999998597755699924767754889999999999999749669960787--0126865-67558


Q ss_pred             EE--EEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             58--9886547775201256403654567835789999996156643344543322211135425666887763263102
Q gi|254780544|r   95 VG--VMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDV  172 (448)
Q Consensus        95 gG--I~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~  172 (448)
                      .|  +.+-.-.+..+.-+++=|.++-.-+.-+....|-.+++......+-.+-..|+..+...-+=.|.+.+.+-+...+
T Consensus       130 ~g~~l~lepl~r~~~~l~~~~F~Pc~ILLNNDLS~GiP~iL~~l~~Q~ilPpl~~GW~~RrKS~HF~~Y~~v~~eF~~l~  209 (404)
T pfam08886       130 NGDTLTLEPLVRKGGRLGLKGFDPCLILLNNDLSSGIPEILQGLHEQYLLPPLHAGWANRRKSNHFSAYDEVAKEFAKLI  209 (404)
T ss_pred             CCCEEEEEEEEECCCEEEECCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHH
T ss_conf             99756788788519988856888757997475443683566064655055984567441012267899999999999974


Q ss_pred             HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf             11896699984466543333222123332222222322235577442210137776420023430367531552100013
Q gi|254780544|r  173 TLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIV  252 (448)
Q Consensus       173 ~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR~~iv  252 (448)
                      ...++  .+.+.           |..  |+-+-++..     -..++.......+...+++.-...||--.|    +++|
T Consensus       210 ~IDpW--li~p~-----------f~~--c~~idf~~~-----~g~~~La~~Vd~lL~kI~~KY~eygI~ekP----fV~V  265 (404)
T pfam08886       210 GIDPW--LINPL-----------FSS--CGGVDFHDR-----EGEECLAEKVDALLAKIREKYKEYGIKEKP----FVFV  265 (404)
T ss_pred             CCCCH--HCCCC-----------CCC--CCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHCCCCCCC----EEEE
T ss_conf             99911--13535-----------023--076267744-----369999999999999999999970999884----5999


Q ss_pred             -CCCCC-------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCE
Q ss_conf             -32237-------5533113567777655320022343332211360044432001211111233211011111028970
Q gi|254780544|r  253 -DEKGA-------IVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFN  324 (448)
Q Consensus       253 -d~~G~-------~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~  324 (448)
                       .+.|.       +-+|+++..|--+---+-...|+         ...+++++=+-|+..+++--+  .++|-+   -+.
T Consensus       266 Kad~GTYGMGIm~v~~~~ei~~Lnrk~RnKM~~~K~---------g~~v~~viiQEGV~T~e~~~~--avaEPV---VY~  331 (404)
T pfam08886       266 KADAGTYGMGIMTVRSGDEVLALNRKQRNKMSVIKE---------GLEVSEVIIQEGVYTFERFND--AVAEPV---VYM  331 (404)
T ss_pred             ECCCCCCCCEEEEECCHHHHHHHCHHHHHHHHHCCC---------CCCCCEEEEECCCCEEEEECC--CCCCCE---EEE
T ss_conf             678998773379955999998867777765664048---------875200789668632332489--535756---999


Q ss_pred             ECCCCCCEEE
Q ss_conf             0134662365
Q gi|254780544|r  325 VGGEQSGHII  334 (448)
Q Consensus       325 ~g~E~sg~~~  334 (448)
                      ++.+-.|||+
T Consensus       332 id~~vvggFY  341 (404)
T pfam08886       332 IDRYVVGGFY  341 (404)
T ss_pred             ECCEEEEEEE
T ss_conf             8888757889


No 94 
>PRK08114 cystathionine beta-lyase; Provisional
Probab=34.91  E-value=12  Score=17.12  Aligned_cols=37  Identities=16%  Similarity=0.284  Sum_probs=23.6

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             8389996687797999999999999789879996267
Q gi|254780544|r   43 RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPI   79 (448)
Q Consensus        43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~   79 (448)
                      ...+=+|...++...+.+.++.-=-+.++-++--|+.
T Consensus        52 ~~~~YsR~~NPT~~~lE~~la~LEg~~~a~~fsSGma   88 (395)
T PRK08114         52 GELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAA   88 (395)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf             8767778988769999999999709973798268899


No 95 
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=34.66  E-value=31  Score=14.60  Aligned_cols=224  Identities=17%  Similarity=0.200  Sum_probs=99.4

Q ss_pred             HHHHHHHC-CCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             99999723-79983899966--877979999999999997898799-962678089999998719925898865477752
Q gi|254780544|r   32 VGYLFRGK-KKHRRVVIGKD--TRLSGYMLENSLVAGFTAAGMDAF-ILGPIPSPAVAMLTRSLRADVGVMISASHNPYQ  107 (448)
Q Consensus        32 ~~~~~~~~-~~~~~vvVg~D--~R~~s~~~~~~~~~gl~~~G~~V~-~~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~  107 (448)
                      + .||+.. ...-+=+|-+|  .|++.=...++|.+=|...|+--+ .+.   |=+|--.+|..|+-.|+..|..     
T Consensus        72 L-kYfES~~~i~v~G~vv~e~~~~~Snwra~~SL~~~L~~~~ipgI~GvD---TRaLv~~iR~~G~m~g~I~~~~-----  142 (383)
T TIGR01368        72 L-KYFESKGKIHVKGLVVRELSDRYSNWRATESLDQFLKEHGIPGIYGVD---TRALVKKIREKGTMKGVISTED-----  142 (383)
T ss_pred             C-EEEEECCEEEEEEEEEECCCCCCCHHHHHCCHHHHHHHCCCEEEECCC---HHHHHHHHHHCCCEEEEEEECC-----
T ss_conf             3-034328834899998541236787155650489999856984730457---7999999863585478996067-----


Q ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHCCCCHHH-CCCCEE-EEE
Q ss_conf             01256403654567835789999996-156643344543322211135--4256668877632631021-189669-998
Q gi|254780544|r  108 DNGIKLFGPDGYKVSTDIEDRIETLL-EDDLTSYLSCYDSIGHAKRVD--GVHDRYIEHVKRTLPRDVT-LQGLRI-VVD  182 (448)
Q Consensus       108 ~nGiK~~~~~G~~i~~~~~~~Ie~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~Yi~~l~~~~~~~~~-~~~lkv-vvD  182 (448)
                                   ..  .++.++++- ......   ..+-....+...  .+.+.-.+.- +.+..... .++++| ++|
T Consensus       143 -------------~~--~~~~~~~~~f~~p~~~---~~nLv~~Vst~~~~~~~~~~~~~~-~~~~~~~~g~~~~~Vv~~D  203 (383)
T TIGR01368       143 -------------SN--DEELVEKAKFESPDID---GINLVAEVSTKEPYTWGQGTWNLW-KFFVAKRNGKKPLRVVVID  203 (383)
T ss_pred             -------------CC--HHHHHHHHHHHCCCCC---CCCCCCCEECCCCEEECCCCCHHH-HHHHHCCCCCCCEEEEEEE
T ss_conf             -------------67--0356778654246757---765201001146556068864166-4322113689735999985


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCC------CCCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             44665433332221233322222223----------22235577442------210137776420023430367531552
Q gi|254780544|r  183 CANGASYKVAPEVFWELGADVVVIGD----------KPNGININLDC------GSTNVLSLQRKVHEVRADIGIALDGDG  246 (448)
Q Consensus       183 ~~~G~~~~~~~~il~~lg~~~~~i~~----------~pd~~~~~~~~------~~~~~~~l~~~v~~~~ad~Gia~DgD~  246 (448)
                      |  |+=..++.+|.+ -||+++.+..          .|||.|..=-|      -...+....+.+.+.-.=|||++    
T Consensus       204 f--G~K~nIlr~L~~-rG~~v~vVP~~~~~~~i~~~~PDGiflSNGPGDPH~~~~~~i~~~~~l~~~~~P~fGICL----  276 (383)
T TIGR01368       204 F--GVKQNILRRLVK-RGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPHAAVEPAIETVRELLEAKIPIFGICL----  276 (383)
T ss_pred             C--CCCHHHHHHHHH-CCCEEEEECCCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH----
T ss_conf             5--887558989976-698799967899889998657888999087988056789999999999844897100266----


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHH--HHHHHHCCCCCCC-CCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             100013322375533113567777--6553200223433-3221136004443200121111
Q gi|254780544|r  247 DRVIIVDEKGAIVNGDQIMALIAR--EWMSHSLLRGNGI-VTTVMSNIGLERFIAGLGLSLK  305 (448)
Q Consensus       247 DR~~ivd~~G~~i~~d~~~~lla~--~ll~~~~~~~~~v-v~~v~ss~~i~~~a~~~g~~v~  305 (448)
                                    |+|++||.+-  -+.-+..+||... |.+..+ .-++--+..||--|-
T Consensus       277 --------------GHQllALA~Ga~TyKlKFGHRG~NhPV~~~~~-g~v~ITsQNHGyAVD  323 (383)
T TIGR01368       277 --------------GHQLLALAFGAKTYKLKFGHRGGNHPVKDLRT-GRVEITSQNHGYAVD  323 (383)
T ss_pred             --------------HHHHHHHHCCCCEEECCCCCCCCCCCEEECCC-CEEEEEEECCCEECC
T ss_conf             --------------68999997388700046567887513144279-879999706871257


No 96 
>TIGR00512 aIF-2BI_fam translation initiation factor, putative, aIF-2BI family; InterPro: IPR005251   This family contains proteins designated as translation initiation factor 2B subunit 1 (alpha) and 5-methylthioribose-1-phosphate isomerase (MTNA, 5.3.1.23 from EC, ).   The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven.    5-methylthioribose-1-phosphate isomerase (MTNA) participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthio ribulose-1-phosphate . The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species..
Probab=34.56  E-value=31  Score=14.59  Aligned_cols=23  Identities=30%  Similarity=0.605  Sum_probs=10.9

Q ss_pred             CCCCCCCCCCCCCCC--CCHHHHHHHHH
Q ss_conf             210001332237553--31135677776
Q gi|254780544|r  246 GDRVIIVDEKGAIVN--GDQIMALIARE  271 (448)
Q Consensus       246 ~DR~~ivd~~G~~i~--~d~~~~lla~~  271 (448)
                      |||+.   ++|.+.+  |-..++++|++
T Consensus       208 ADRIa---~~GdvaNKIGTY~lAvlAK~  232 (306)
T TIGR00512       208 ADRIA---RDGDVANKIGTYGLAVLAKA  232 (306)
T ss_pred             CCEEE---CCCCEEEHHHHHHHHHHHHC
T ss_conf             31210---68932400667899999820


No 97 
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047   This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , .   CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=32.94  E-value=33  Score=14.43  Aligned_cols=76  Identities=13%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             EEEEEC--CCCC------HHHHHHH-HHHHHHHCCC-EEEEECC-CCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEE
Q ss_conf             899966--8779------7999999-9999997898-7999626-78089999998719925898865477752012564
Q gi|254780544|r   45 VVIGKD--TRLS------GYMLENS-LVAGFTAAGM-DAFILGP-IPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKL  113 (448)
Q Consensus        45 vvVg~D--~R~~------s~~~~~~-~~~gl~~~G~-~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~  113 (448)
                      +..|.|  .|..      ....... ..+-+.++|. |++..+. |+.|.+.....+++..   +||.|.+ ..--|+.+
T Consensus       295 ~CtGqe~~~R~~H~~EvFvG~~gN~~~~E~~iaTG~iD~~~~d~nC~~Psl~~~AE~y~v~---ii~vd~~-~~~~Ga~~  370 (647)
T TIGR01702       295 ICTGQELLMRVGHLPEVFVGLVGNWLSQELLIATGAIDAMVVDVNCTLPSLPAVAEKYHVK---IITVDDL-AKIKGADY  370 (647)
T ss_pred             EECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCE---EEEEEEE-EECCCCCC
T ss_conf             7404157534577762102347538989888841623776661258888714677361753---7874100-00177001


Q ss_pred             ECCCCCCCCHHHHHH
Q ss_conf             036545678357899
Q gi|254780544|r  114 FGPDGYKVSTDIEDR  128 (448)
Q Consensus       114 ~~~~G~~i~~~~~~~  128 (448)
                          +.+.+++...+
T Consensus       371 ----~i~y~~~~A~E  381 (647)
T TIGR01702       371 ----KIPYDPEKAEE  381 (647)
T ss_pred             ----CCCCCHHHHHH
T ss_conf             ----48988767889


No 98 
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=32.81  E-value=30  Score=14.67  Aligned_cols=53  Identities=19%  Similarity=0.187  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC---CHHHHHHHH
Q ss_conf             99999999997237998389996687797999999999999789879996267---808999999
Q gi|254780544|r   27 RIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPI---PSPAVAMLT   88 (448)
Q Consensus        27 ~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~---ptP~l~~a~   88 (448)
                      =||.|+....+    |=+++|-+=---|+     -=..+|.|.|.+|+.+...   -.|.=|+.|
T Consensus        77 GiGLAL~Aa~k----GYk~Iiv~PeKmS~-----eKv~VL~AlGAEivrtPT~a~~d~PeSh~gV  132 (527)
T TIGR01137        77 GIGLALVAAIK----GYKCIIVLPEKMSE-----EKVDVLKALGAEIVRTPTAAAFDSPESHIGV  132 (527)
T ss_pred             HHHHHHHHHHC----CCEEEEECCCCCCH-----HHHHHHHHHCCEEEECCCCCCCCCCCCCCHH
T ss_conf             68999999526----86399986875461-----4789999819807787888788848652048


No 99 
>PRK00238 consensus
Probab=32.58  E-value=34  Score=14.39  Aligned_cols=27  Identities=11%  Similarity=0.175  Sum_probs=16.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             654333322212333222222232223
Q gi|254780544|r  186 GASYKVAPEVFWELGADVVVIGDKPNG  212 (448)
Q Consensus       186 G~~~~~~~~il~~lg~~~~~i~~~pd~  212 (448)
                      ++++..=.++|+++|++...+...-|.
T Consensus         7 AS~Sp~R~~lL~~~gi~f~~~~~~iDE   33 (198)
T PRK00238          7 ASGSPRRRELLTQIGVPFSVLSAPIDE   33 (198)
T ss_pred             CCCCHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             389999999998789982998389999


No 100
>TIGR01780 SSADH succinic semialdehyde dehydrogenase; InterPro: IPR010102   Succinic semialdehyde dehydrogenase is one of three enzymes constituting 4-aminobutyrate (GABA) degradation in both prokaryotes and eukaryotes, catalysing the (NAD(P)+)-dependent catabolism reaction of succinic semialdehyde to succinate for metabolism by the citric acid cycle. In Escherichia coli, succinic semialdehyde dehydrogenase is located in a unidirectionally transcribed gene cluster encoding enzymes for GABA degradation and is suggested to be co-transcribed with succinic semialdehyde transaminase from a common promoter upstream of SSADH . Similar gene arrangements can be found in characterised Ralstonia eutropha  and the genome analysis of Bacillus subtilis.     Prokaryotic succinic semialdehyde dehydrogenases (1.2.1.16 from EC) share high sequence homology to characterised succinic semialdehyde dehydrogenases from rat and human (1.2.1.24 from EC), exhibiting conservation of proposed cofactor binding residues, and putative active sites (G-237 and G-242, C-293 and G-259 respectively of rat SSADH) .    Eukaryotic SSADH enzymes exclusively utilise NAD+ as a cofactor, exhibiting little to no NADP+ activity . While a NADP+ preference has been detected in prokaryotes in addition to both NADP+- and NAD+-dependencies as in Escherichia coli, Pseudomonas, and Klebsiella pneumoniae . The function of this alternative SSADH currently is unknown, but has been suggested to play a possible role in 4-hydroxyphenylacetic degradation .    SSADH enzyme belongs to the aldehyde dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase . Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family. ; GO: 0016620 oxidoreductase activity acting on the aldehyde or oxo group of donors NAD or NADP as acceptor.
Probab=30.66  E-value=36  Score=14.20  Aligned_cols=62  Identities=24%  Similarity=0.321  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEE------EEEECCCCCCCEEEEEE
Q ss_conf             7797999999999999789879996267808999999871992589------88654777520125640
Q gi|254780544|r   52 RLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGV------MISASHNPYQDNGIKLF  114 (448)
Q Consensus        52 R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI------~iTaSHNP~~~nGiK~~  114 (448)
                      .+-|-||.|=.+..| ++||.++.-..--||.-.++.-+|-..+||      +||.|.|-...-|=.+.
T Consensus       129 NFPaAMITRKagaAL-AAGCT~i~KPA~~TPlsALaLA~LA~~AG~P~GVlnVi~g~~~~a~~~G~~Lt  196 (454)
T TIGR01780       129 NFPAAMITRKAGAAL-AAGCTVIIKPAEQTPLSALALARLAEEAGIPKGVLNVITGSANDAEEVGKVLT  196 (454)
T ss_pred             CCHHHHHHHHHHHHH-HCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHCCEEC
T ss_conf             872367773344676-30682786378888478999999998578999841356176404355150002


No 101
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family; InterPro: IPR010158   Enzymes in this subfamily hydrolyse the amide bonds of compounds containing carbamoyl groups or hydantoin rings . These enzymes are members of the broader family of amidases.; GO: 0016813 hydrolase activity acting on carbon-nitrogen (but not peptide) bonds in linear amidines, 0008152 metabolic process.
Probab=30.61  E-value=16  Score=16.34  Aligned_cols=57  Identities=25%  Similarity=0.290  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEE--ECCCCHHHHHHHHH-HHCCCEEEEEEECCCCCCCEEEEEECCCC
Q ss_conf             99999999999978987999--62678089999998-71992589886547775201256403654
Q gi|254780544|r   56 YMLENSLVAGFTAAGMDAFI--LGPIPSPAVAMLTR-SLRADVGVMISASHNPYQDNGIKLFGPDG  118 (448)
Q Consensus        56 ~~~~~~~~~gl~~~G~~V~~--~g~~ptP~l~~a~~-~~~~~gGI~iTaSHNP~~~nGiK~~~~~G  118 (448)
                      +..+..+.+=++++|+.|..  +|-.      |+.+ -.+.+.-.++.+||--.-+||=+|=+.=|
T Consensus        31 r~~~~~~~~~mr~~Gl~v~~D~~GNL------~gr~~G~~p~~~~vl~GSHlDtv~nGG~fDG~lG   90 (406)
T TIGR01879        31 REAKDLVKKRMRAAGLEVEIDEVGNL------IGRKEGTEPDLEVVLVGSHLDTVVNGGKFDGVLG   90 (406)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCC------EECCCCCCCCCCEEEEECCHHCCCCCCCCCCHHH
T ss_conf             99999999999865981765252230------2106787888772788222102379872063667


No 102
>TIGR02408 ectoine_ThpD ectoine hydroxylase; InterPro: IPR012774    Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.; GO: 0016725 oxidoreductase activity acting on CH or CH2 groups.
Probab=30.00  E-value=25  Score=15.21  Aligned_cols=44  Identities=11%  Similarity=0.212  Sum_probs=24.1

Q ss_pred             EEEEE--CCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCHHHH
Q ss_conf             99984--46654333322212333222222----23222355774422101377
Q gi|254780544|r  179 IVVDC--ANGASYKVAPEVFWELGADVVVI----GDKPNGININLDCGSTNVLS  226 (448)
Q Consensus       179 vvvD~--~~G~~~~~~~~il~~lg~~~~~i----~~~pd~~~~~~~~~~~~~~~  226 (448)
                      +.+||  |||++.++.|---    .+|..+    .+..+.+|-.|.+.|+++..
T Consensus       221 ~wFDcN~mHGSgsNItP~pR----sNVF~VfNSveNal~ePfaap~rRPE~iaa  270 (278)
T TIGR02408       221 VWFDCNLMHGSGSNITPYPR----SNVFLVFNSVENALEEPFAAPRRRPEYIAA  270 (278)
T ss_pred             HHHHCCCCCCCCCCCCCCCC----CCEEEEECCHHHHCCCCCCCCCCCCHHHHH
T ss_conf             42220100478888887543----452678615043027763467878314432


No 103
>TIGR02877 spore_yhbH sporulation protein YhbH; InterPro: IPR014230   Proteins in this entry, typified by YhbH from Bacillus subtilis, are found in the genomes of nearly every endospore-forming bacterium, and in no other genomes. The gene in Bacillus subtilis was shown to be a member of the sigma-E regulon, with mutation leading to a sporulation defect ..
Probab=29.75  E-value=37  Score=14.15  Aligned_cols=28  Identities=18%  Similarity=0.060  Sum_probs=13.7

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             2365301000144423320246677755
Q gi|254780544|r  331 GHIILSDYGSTGDGLVAALQVLRYIKQY  358 (448)
Q Consensus       331 g~~~~~~~~~~~Dgi~a~l~~le~l~~~  358 (448)
                      .||..++....+|.=++.-++.+++..+
T Consensus       308 FHfSDGDNl~~Dn~Rlav~l~~~L~~~c  335 (392)
T TIGR02877       308 FHFSDGDNLSSDNERLAVKLVRKLLEVC  335 (392)
T ss_pred             CEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             3553377889886468999999998876


No 104
>PRK08185 hypothetical protein; Provisional
Probab=29.58  E-value=38  Score=14.08  Aligned_cols=87  Identities=16%  Similarity=0.095  Sum_probs=54.2

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHH
Q ss_conf             506877889999999999999997237998389996687---7979999999999997898799-962678089999998
Q gi|254780544|r   14 KSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTR---LSGYMLENSLVAGFTAAGMDAF-ILGPIPSPAVAMLTR   89 (448)
Q Consensus        14 ~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R---~~s~~~~~~~~~gl~~~G~~V~-~~g~~ptP~l~~a~~   89 (448)
                      -+|.  .|.+.+..+-.|..      ..+++|++..-..   +.+..+...+........+.|. .+.-+.+...-....
T Consensus        17 AfNv--~~~e~~~avi~AAe------e~~sPvIiq~s~~~~~~~g~~~~~~~~~~a~~~~VpV~lHLDH~~~~e~~~~ai   88 (283)
T PRK08185         17 AFNV--ADSCFLRAVVEEAE------ANNAPAIIAIHPNELDFVGDDFFAYVRERAQRSPVPFVIHLDHGASVEDVMRAI   88 (283)
T ss_pred             EEEE--CCHHHHHHHHHHHH------HHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf             9888--99999999999999------978798999381288771199999999999877998999899999999999999


Q ss_pred             HHCCCEEEEEEECCCCCCCE
Q ss_conf             71992589886547775201
Q gi|254780544|r   90 SLRADVGVMISASHNPYQDN  109 (448)
Q Consensus        90 ~~~~~gGI~iTaSHNP~~~n  109 (448)
                      ..+++ .||+-+||-|.+.|
T Consensus        89 ~~GFs-SVM~DgS~lp~eeN  107 (283)
T PRK08185         89 RCGFT-SVMIDGSLLPYEEN  107 (283)
T ss_pred             HCCCC-EEEEECCCCCHHHH
T ss_conf             82998-79863898999999


No 105
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380    Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=29.24  E-value=38  Score=14.05  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=13.4

Q ss_pred             HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             42002343036753155210001332237553
Q gi|254780544|r  229 RKVHEVRADIGIALDGDGDRVIIVDEKGAIVN  260 (448)
Q Consensus       229 ~~v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~  260 (448)
                      ..++...||+.+        +++|=|+|+-+.
T Consensus       172 ~i~~g~~ADv~V--------~ALIGERGREVR  195 (430)
T TIGR02546       172 MIARGASADVNV--------IALIGERGREVR  195 (430)
T ss_pred             HHHCCCCCCEEE--------EEECCCCCHHHH
T ss_conf             986189887899--------860278760478


No 106
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=28.91  E-value=39  Score=14.01  Aligned_cols=159  Identities=18%  Similarity=0.166  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEE-ECCCCCHHHHHHHHHHH-------HHHCCCEEEEECCCCHHHHHHHHHHHC--CCEE
Q ss_conf             9999999999723799838999-66877979999999999-------997898799962678089999998719--9258
Q gi|254780544|r   27 RIGIAVGYLFRGKKKHRRVVIG-KDTRLSGYMLENSLVAG-------FTAAGMDAFILGPIPSPAVAMLTRSLR--ADVG   96 (448)
Q Consensus        27 ~i~~a~~~~~~~~~~~~~vvVg-~D~R~~s~~~~~~~~~g-------l~~~G~~V~~~g~~ptP~l~~a~~~~~--~~gG   96 (448)
                      ++|.+++..+..  .+-.|+|| ++.--+....+..+-..       -...+.+|+.+ .+|.+...-..+.+.  ..+=
T Consensus        11 niG~alA~~~a~--ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvL-AVP~~a~~~v~~~l~~~~~~K   87 (211)
T COG2085          11 NIGSALALRLAK--AGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVL-AVPFEAIPDVLAELRDALGGK   87 (211)
T ss_pred             HHHHHHHHHHHH--CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEE-ECCHHHHHHHHHHHHHHHCCE
T ss_conf             187899999996--79739996478806788999864565334776888843998999-545787776999999870990


Q ss_pred             EEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCC
Q ss_conf             98865477752012564036545678357899999961566433445433222111354256668877632631021189
Q gi|254780544|r   97 VMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQG  176 (448)
Q Consensus        97 I~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~  176 (448)
                      |.|.++ ||-++ ..........+-.....+.|.+.+...  +.+...+.+..            +.+... +.   ...
T Consensus        88 IvID~t-np~~~-~~~~~~~~~~~~~~saae~va~~lp~a--kVVkAFn~i~a------------~~l~~~-~~---~~~  147 (211)
T COG2085          88 IVIDAT-NPIEV-NGEPGDLYLVPSEGSAAEIVAKLLPGA--KVVKAFNTIPA------------AVLADL-AK---PGG  147 (211)
T ss_pred             EEEECC-CCCCC-CCCCCCCCCCCCCCCHHHHHHHHCCCC--CHHHHHCCCCH------------HHHCCC-CC---CCC
T ss_conf             999668-87544-688301036888885999999977983--01465503578------------773137-77---687


Q ss_pred             CEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6699984466-5433332221233322222223
Q gi|254780544|r  177 LRIVVDCANG-ASYKVAPEVFWELGADVVVIGD  208 (448)
Q Consensus       177 lkvvvD~~~G-~~~~~~~~il~~lg~~~~~i~~  208 (448)
                      -+.+.=|.+- -+...+.++.+++|++.+....
T Consensus       148 ~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         148 RRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             566898459499999999999962966340356


No 107
>PRK11679 lipoprotein; Provisional
Probab=28.89  E-value=25  Score=15.14  Aligned_cols=37  Identities=16%  Similarity=0.227  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCEEEEEEE-CC--CHHHHHHHHHHHHHHHH
Q ss_conf             599967798227999961-59--98999999999999987
Q gi|254780544|r  408 RLIVRASGTESLIRIMAE-GD--DLSRIKRIVDDLAKVIP  444 (448)
Q Consensus       408 w~liRpSgTEp~iriy~E-a~--~~~~~~~l~~~~~~~i~  444 (448)
                      ++.|.--|...-|.+.=+ ++  +.+.++.|..-+...++
T Consensus       304 ~iqvgdlgn~TSl~~~D~~g~plt~~~~~~l~~vl~a~~s  343 (345)
T PRK11679        304 KLQVGDLDNRSSLQFIDPKGHPLTQSQNDALVAVFQAAFS  343 (345)
T ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8998336993179998899797778999999999999860


No 108
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=28.79  E-value=38  Score=14.10  Aligned_cols=50  Identities=32%  Similarity=0.401  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56668877632631021189669998446654333322212333222222232
Q gi|254780544|r  157 HDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDK  209 (448)
Q Consensus       157 ~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~  209 (448)
                      ++.-.+.+.+.++.+-.+++. -|.|..+|++...++  |.+.|++|+.+.-.
T Consensus        45 r~~mr~~~l~wl~~~~dl~G~-rVLDaGCGtG~la~~--LA~~Ga~V~avDiS   94 (230)
T PRK07580         45 HQRMRDTVLSWLPADGDLTGL-SILDAGCGTGSLSIP--LARRGAKVVASDIS   94 (230)
T ss_pred             HHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHH--HHHCCCEEEEEECC
T ss_conf             999999999973105997899-898818786787999--99779989998389


No 109
>TIGR01330 bisphos_HAL2 3'(2'),5'-bisphosphate nucleotidase; InterPro: IPR006239    Sulphate is incorporated into 3-phosphoadenylylsulphate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulphate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. In plants these sequences represent a form of the enzyme, 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle. Sensitivity of this essential enzyme to sodium and other metal ions results is responsible for characterization of this enzyme as a salt tolerance protein . Some members of this family are active also as inositol 1-monophosphatase. ; GO: 0008441 3'(2')5'-bisphosphate nucleotidase activity, 0006790 sulfur metabolic process.
Probab=28.28  E-value=40  Score=13.94  Aligned_cols=78  Identities=17%  Similarity=0.115  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCCCCEE-----EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             223557744221013777642002343036-----753155210001332237553311356777765532002234333
Q gi|254780544|r  210 PNGININLDCGSTNVLSLQRKVHEVRADIG-----IALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIV  284 (448)
Q Consensus       210 pd~~~~~~~~~~~~~~~l~~~v~~~~ad~G-----ia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv  284 (448)
                      ||+.|.|..-.....+.+.+++...++.=|     ...||       ||.+-.||.|+|++.-||  |+++    |..++
T Consensus       109 ~dflftn~~~~~~S~~d~l~~Id~G~y~GGr~GR~W~LDP-------iDGTkGFlRG~QYAvaLA--Lie~----Gkv~l  175 (382)
T TIGR01330       109 DDFLFTNELVKLKSAEDLLKIIDRGNYEGGRKGRHWVLDP-------IDGTKGFLRGDQYAVALA--LIEN----GKVVL  175 (382)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECC-------CCCCCCCCCHHHHHHHHH--HHHC----CCEEE
T ss_conf             6504424666756889999986257889888987577167-------567655622568999987--6527----90799


Q ss_pred             CCCCCCCH-HHHHHHCC
Q ss_conf             22113600-44432001
Q gi|254780544|r  285 TTVMSNIG-LERFIAGL  300 (448)
Q Consensus       285 ~~v~ss~~-i~~~a~~~  300 (448)
                      .-+-|+.+ +...+.+.
T Consensus       176 g~lGCPNlp~~~~~~~~  192 (382)
T TIGR01330       176 GVLGCPNLPLKSEAAQN  192 (382)
T ss_pred             EEEECCCCCHHHHCCCC
T ss_conf             98606885101102683


No 110
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3).  A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster.  The Map2k5 protein contains a type I PB1 domain.
Probab=27.90  E-value=30  Score=14.73  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             315521000133223755331135677776553
Q gi|254780544|r  242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMS  274 (448)
Q Consensus       242 ~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~  274 (448)
                      =|-||||+.+-       +.+++-||+..|+..
T Consensus        47 eDEdGDRITVR-------SDeEm~AMisyy~~~   72 (91)
T cd06395          47 EDEDGDRITVR-------SDEEMKAMLSYYCST   72 (91)
T ss_pred             CCCCCCEEEEC-------CHHHHHHHHHHHHHH
T ss_conf             13558876871-------679999999999999


No 111
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS).  In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=27.55  E-value=41  Score=13.86  Aligned_cols=66  Identities=15%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             CCEEEEECCC-CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf             8389996687-79799999999999978987999626780899999987199258988654777520125640
Q gi|254780544|r   43 RRVVIGKDTR-LSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLF  114 (448)
Q Consensus        43 ~~vvVg~D~R-~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~  114 (448)
                      ++|+|.|-+- .+|.+.+..+-+.|...|+++-.- .+....+  ..+..++|  ++|+.++-|.++ ++.++
T Consensus         1 KkIlVaCGsGiaTSt~v~~ki~~~l~e~gi~~~i~-~~~i~e~--~~~~~~~D--liv~tt~~~~~~-~iPvi   67 (89)
T cd05566           1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVE-QCKIAEV--PSLLDDAD--LIVSTTKVPEDY-GIPVI   67 (89)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECHHHH--HHCCCCCC--EEEEECCCCCCC-CCCEE
T ss_conf             94999989970399999999999999869915999-9759998--74279987--899944268888-98789


No 112
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.54  E-value=5  Score=19.50  Aligned_cols=59  Identities=12%  Similarity=0.187  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHHHHCCC--------EEEEEEECCCC-C-----CCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             267808999999871992--------58988654777-5-----20125640365456783578999999615
Q gi|254780544|r   77 GPIPSPAVAMLTRSLRAD--------VGVMISASHNP-Y-----QDNGIKLFGPDGYKVSTDIEDRIETLLED  135 (448)
Q Consensus        77 g~~ptP~l~~a~~~~~~~--------gGI~iTaSHNP-~-----~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~  135 (448)
                      -..+.|++++.+.+....        .|=|.+--..- -     ...|+.+++..+...+.+...-+-.+++.
T Consensus        81 pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~  153 (429)
T COG0124          81 PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEA  153 (429)
T ss_pred             CCCCHHHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCEEEEECCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             6674999999995622036872599833562378888887503687676776799865389999999999997


No 113
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=25.77  E-value=44  Score=13.66  Aligned_cols=191  Identities=17%  Similarity=0.127  Sum_probs=79.6

Q ss_pred             ECCCCCCHHHHHHH---HHHHHHHHHHC-----CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH----
Q ss_conf             06877889999999---99999999723-----7998389996687797999999999999789879996267808----
Q gi|254780544|r   15 SNTFPITPNFMMRI---GIAVGYLFRGK-----KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSP----   82 (448)
Q Consensus        15 ~~~~~~t~~~v~~i---~~a~~~~~~~~-----~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP----   82 (448)
                      .+..+++++-+..|   +..+-...+..     -.+++|..=+  .-.|-.-..++..+....|.+|++++...+-    
T Consensus        11 L~~~dls~~ei~~il~~A~~~k~~~~~~~~~~~L~gk~v~~lF--~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~kG   88 (331)
T PRK02102         11 LKLLDFTPAEIEYLIDLSIELKAAKKAGIEHQYLKGKNIALIF--EKTSTRTRCAFEVAAIDLGAHVTYLGPNDIQLGKK   88 (331)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE--CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf             8500099999999999999998766458877667999899995--58973059999999998599099578755637789


Q ss_pred             -HHHHHHHHHC-CCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCHHHH
Q ss_conf             -9999998719-925898865477752012564036545678357899999961566433445433222111-3542566
Q gi|254780544|r   83 -AVAMLTRSLR-ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKR-VDGVHDR  159 (448)
Q Consensus        83 -~l~~a~~~~~-~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (448)
                       .+.=.++.+. ...+|+++..                      ....++.+.+....+..   +..+...+ .....|.
T Consensus        89 Es~~Dt~~~Ls~~~D~iviR~~----------------------~~~~~~~~a~~~~vPVI---N~~~~~~HPtQ~L~Dl  143 (331)
T PRK02102         89 ESMEDTARVLGRMYDGIEYRGF----------------------SQEIVEELAKYSGVPVW---NGLTDEWHPTQMLADF  143 (331)
T ss_pred             CCHHHHHHHHHHHCCEEEEECC----------------------CHHHHHHHHHHCCCCEE---CCCCCCCCHHHHHHHH
T ss_conf             8989999999975167899627----------------------72899999974798645---4888764879999999


Q ss_pred             HHHHHHHCCCCHHHCCCCEEEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             6887763263102118966999--84466543333222123332222222322235577442210137776420023430
Q gi|254780544|r  160 YIEHVKRTLPRDVTLQGLRIVV--DCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRAD  237 (448)
Q Consensus       160 Yi~~l~~~~~~~~~~~~lkvvv--D~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad  237 (448)
                      | . +.+.+.   .+++++|++  |+.|.++.. +-.++..+|.++..+.  |.+    ..|..+.+....+..+..+..
T Consensus       144 ~-T-i~e~~g---~l~gl~i~~vGD~~nnVa~S-~~~~~~~lG~~v~~~~--P~~----~~p~~~~~~~~~~~~~~~g~~  211 (331)
T PRK02102        144 M-T-MKEHFG---PLKGLKLAYLGDGRNNMANS-LLVGGAKLGMDVRICA--PKS----LWPEEELVAQAKEIAKETGAK  211 (331)
T ss_pred             H-H-HHHHHC---CCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEEEEC--CCC----CCCCHHHHHHHHHHHHHHCCE
T ss_conf             9-9-999838---75677389978876424668-9999985598599975--864----488979999999999982993


Q ss_pred             EEEEECC
Q ss_conf             3675315
Q gi|254780544|r  238 IGIALDG  244 (448)
Q Consensus       238 ~Gia~Dg  244 (448)
                      +-+..|.
T Consensus       212 i~~~~d~  218 (331)
T PRK02102        212 ITITEDV  218 (331)
T ss_pred             EEEEECH
T ss_conf             8999566


No 114
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=25.63  E-value=45  Score=13.65  Aligned_cols=88  Identities=18%  Similarity=0.295  Sum_probs=48.6

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             35425666887763263102118966999844665433332221233322222223222355774422101377764200
Q gi|254780544|r  153 VDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVH  232 (448)
Q Consensus       153 ~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~  232 (448)
                      ..+..+.|++++.+.-       +.-+.+|+--+.+..-..+-..++|+.=-.+.     +.+|+...+++++.|.+.  
T Consensus        80 t~EA~~kYidfv~~~~-------d~PfliDSt~~~aR~aa~k~a~E~GladR~IY-----NSIn~s~~~eEieaL~es--  145 (310)
T PRK00979         80 TGEAIEKYIDFVSEID-------DTPFLIDSTSGDARAAAAKYATEVGLADRAIY-----NSINMSIEEEEIEALKES--  145 (310)
T ss_pred             CHHHHHHHHHHHHHCC-------CCCEEECCCCHHHHHHHHHHHHHHCHHHHHHH-----HHCCCCCCHHHHHHHHHC--
T ss_conf             9899999988774046-------78757438867888999867665144677787-----506766798999999856--


Q ss_pred             CCCCCEEEEECCCC----CCCCCCCC
Q ss_conf             23430367531552----10001332
Q gi|254780544|r  233 EVRADIGIALDGDG----DRVIIVDE  254 (448)
Q Consensus       233 ~~~ad~Gia~DgD~----DR~~ivd~  254 (448)
                      ..++.+.++||+--    .|+-++.+
T Consensus       146 di~aaIiLaFnp~dpsv~gr~~~l~~  171 (310)
T PRK00979        146 DIDAAIVLAFNPMDPSVEGRLKMLED  171 (310)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             99768998607999972346899870


No 115
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=25.52  E-value=38  Score=14.05  Aligned_cols=76  Identities=16%  Similarity=0.251  Sum_probs=41.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCHH
Q ss_conf             333322212333222222232223557744221013777642002343036753155210-0013322375533113
Q gi|254780544|r  189 YKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDR-VIIVDEKGAIVNGDQI  264 (448)
Q Consensus       189 ~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR-~~ivd~~G~~i~~d~~  264 (448)
                      +..+++..+++|++++++|.--........+..+-.+.+.+.++..+.-|.|.=.||-++ -.+...-.++=.||++
T Consensus       146 ~eWArKcVK~fGAdmvTiHlIsTdPk~~Dksp~EAaK~~EdvLQAVdvP~viGGSGnpeKDPlVLEkaAEvAEGeR~  222 (401)
T TIGR00381       146 AEWARKCVKEFGADMVTIHLISTDPKVKDKSPKEAAKVLEDVLQAVDVPLVIGGSGNPEKDPLVLEKAAEVAEGERC  222 (401)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf             35888888762766388644337885468872247889998763406775774788886675789988431136216


No 116
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=25.39  E-value=45  Score=13.62  Aligned_cols=61  Identities=23%  Similarity=0.315  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5433222111354256668877632631021189669998446654333322212333222222232
Q gi|254780544|r  143 CYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDK  209 (448)
Q Consensus       143 ~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~  209 (448)
                      .|+.-|.......++..=+.++.+.+.   .++++|| .|-++|  ++++.+.+.++|++|+.+...
T Consensus        19 WWd~~g~~~~Lh~~N~~R~~~i~~~~~---~l~G~~I-LDVGCG--gG~lse~LAr~Ga~VtGID~S   79 (233)
T PRK05134         19 WWDPNGEFKPLHRINPLRLNYIREHAG---GLFGKRV-LDVGCG--GGILSESMARLGATVTGIDAS   79 (233)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCEE-EEECCC--CCHHHHHHHHCCCEEEEECCC
T ss_conf             479999960788836999999997514---6689989-997558--971128999679979998799


No 117
>pfam06804 Lipoprotein_18 NlpB/DapX lipoprotein. This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.
Probab=25.23  E-value=30  Score=14.73  Aligned_cols=91  Identities=11%  Similarity=0.171  Sum_probs=43.7

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHH---HHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             9998446654333322212333222222232223557744-2210137776---42002343036753155210001332
Q gi|254780544|r  179 IVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLD-CGSTNVLSLQ---RKVHEVRADIGIALDGDGDRVIIVDE  254 (448)
Q Consensus       179 vvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~-~~~~~~~~l~---~~v~~~~ad~Gia~DgD~DR~~ivd~  254 (448)
                      ++++..+-.+..-++..|.++|.++...+...--.+.++. |+...-..+-   -.+.+..+-|-+.=-|+.-.+.+.|+
T Consensus       202 liv~~pfd~~W~Rl~~aL~r~GFtV~Drdrs~G~~~V~Y~~p~s~~W~~lg~~~~~l~~g~Y~iqlgd~~n~Tsi~~~d~  281 (303)
T pfam06804       202 LIARAPYNVLWQRLPAALPKMGFTITDRSQSQGTVKAKYASPDDESWQELGVKPPELKSGTYTFQLGDLGNRSSINFTDP  281 (303)
T ss_pred             EEECCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECC
T ss_conf             99679299999999888987698787335566379999828981447763898778898846999831699317999889


Q ss_pred             CCCCCCCCHHHHHHH
Q ss_conf             237553311356777
Q gi|254780544|r  255 KGAIVNGDQIMALIA  269 (448)
Q Consensus       255 ~G~~i~~d~~~~lla  269 (448)
                      +|+.++++.+-.|..
T Consensus       282 ~g~pl~~~~~~~l~~  296 (303)
T pfam06804       282 KGKPLTEAQLKALVP  296 (303)
T ss_pred             CCCCCCHHHHHHHHH
T ss_conf             979978999999999


No 118
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase; InterPro: IPR012767    This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis..
Probab=24.76  E-value=46  Score=13.55  Aligned_cols=36  Identities=17%  Similarity=0.306  Sum_probs=14.8

Q ss_pred             CCEEEEECCCC-CCEEEEEEEC-CCHHHHHHHHHHHHH
Q ss_conf             86599967798-2279999615-998999999999999
Q gi|254780544|r  406 IDRLIVRASGT-ESLIRIMAEG-DDLSRIKRIVDDLAK  441 (448)
Q Consensus       406 ~~w~liRpSgT-Ep~iriy~Ea-~~~~~~~~l~~~~~~  441 (448)
                      ++.|||=+.|- +|+-++|-.. .++...++.+...+.
T Consensus       402 v~~vLvD~~g~~~~L~~~~~~~~g~~~~~~~~~~~~K~  439 (971)
T TIGR02401       402 VNGVLVDAEGEEEPLAALYRNVTGRPADIEETLRRAKR  439 (971)
T ss_pred             HHHHCCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             02210357635728999999716881106999999999


No 119
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=24.74  E-value=46  Score=13.55  Aligned_cols=21  Identities=10%  Similarity=-0.035  Sum_probs=8.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHC
Q ss_conf             998999999999999987520
Q gi|254780544|r  427 DDLSRIKRIVDDLAKVIPMID  447 (448)
Q Consensus       427 ~~~~~~~~l~~~~~~~i~~i~  447 (448)
                      ++++.++++.+--+++.+.++
T Consensus       374 P~ee~l~~~~e~G~~~A~~lK  394 (395)
T PRK11921        374 PDDEALDRCRSFGENFAESLK  394 (395)
T ss_pred             CCHHHHHHHHHHHHHHHHHHC
T ss_conf             998999999999999999861


No 120
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857   Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined .   These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=24.34  E-value=47  Score=13.50  Aligned_cols=99  Identities=23%  Similarity=0.228  Sum_probs=54.3

Q ss_pred             EEEEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             69998446654--3333222123332222222322235577442210137776420023430367531552100013322
Q gi|254780544|r  178 RIVVDCANGAS--YKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEK  255 (448)
Q Consensus       178 kvvvD~~~G~~--~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR~~ivd~~  255 (448)
                      +||+..|.|+|  +.++..+.....|+.-.+ -..|...|.+.                        |.+ .-++.+-  
T Consensus        29 ~iv~~GmGGSGi~G~~~~~~~~~~~~~~Pvf-vv~DY~~p~~v------------------------~~~-~~lIAvS--   80 (338)
T TIGR02128        29 EIVISGMGGSGIAGRILSELLLEKSFEVPVF-VVKDYRLPAFV------------------------DGK-TLLIAVS--   80 (338)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHHCCCCCEE-EECCCCCCCCC------------------------CCC-EEEEEEE--
T ss_conf             2278725657899999999865324788888-87077896988------------------------985-1799986--


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             37553311356777765532002234333221136004443200121111123321
Q gi|254780544|r  256 GAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGD  311 (448)
Q Consensus       256 G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~  311 (448)
                         .|||-.=.|.+-....++   +. =+.-++|..-|.++|++.|+++++.|-|+
T Consensus        81 ---YSGNT~ETl~~~e~A~~~---~~-~~~aITSGG~L~e~A~e~g~~~i~iP~G~  129 (338)
T TIGR02128        81 ---YSGNTEETLSAVEEAKKK---GA-KVIAITSGGKLEEMAKEEGLDVIKIPKGL  129 (338)
T ss_pred             ---CCCCHHHHHHHHHHHHHC---CC-CEEEEECCCHHHHHCCCCCCCEEEECCCC
T ss_conf             ---178668999999999865---79-55999448538863011487568828861


No 121
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase; InterPro: IPR005785   Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped  into subfamilies.   One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C-terminus side of the PlP-lysine.    Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE) (2.6.1.42 from EC). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family. ; GO: 0004084 branched-chain-amino-acid transaminase activity, 0009081 branched chain family amino acid metabolic process.
Probab=24.18  E-value=47  Score=13.48  Aligned_cols=85  Identities=20%  Similarity=0.350  Sum_probs=45.4

Q ss_pred             CCCCCCCCCCCCCCHHHHHH--HHHCCCCCCEEEEECCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             22235577442210137776--420023430367531552-------100013322375533113567777655320022
Q gi|254780544|r  209 KPNGININLDCGSTNVLSLQ--RKVHEVRADIGIALDGDG-------DRVIIVDEKGAIVNGDQIMALIAREWMSHSLLR  279 (448)
Q Consensus       209 ~pd~~~~~~~~~~~~~~~l~--~~v~~~~ad~Gia~DgD~-------DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~  279 (448)
                      .||-..++-.....|+-.+.  .....+++|=+|..|.+|       |=+.+| .+|.+++|-..-.+|          +
T Consensus       144 ~~n~~pt~aKa~GnYlNS~LAk~EA~~~GydEAi~LD~~GYvaEGsGENIF~V-K~G~l~TPp~~~s~L----------~  212 (302)
T TIGR01122       144 APNTIPTRAKAGGNYLNSILAKIEALRHGYDEAILLDVEGYVAEGSGENIFIV-KDGVLITPPVSSSIL----------K  212 (302)
T ss_pred             CCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCEEEE-ECCEEECCCCHHHHC----------C
T ss_conf             78777622555513177899999996525207664579984876687627887-086787898704224----------8


Q ss_pred             CCCCCCCCCCCCHHHHHHH-CCCCCCCCCCCCC
Q ss_conf             3433322113600444320-0121111123321
Q gi|254780544|r  280 GNGIVTTVMSNIGLERFIA-GLGLSLKRTEVGD  311 (448)
Q Consensus       280 ~~~vv~~v~ss~~i~~~a~-~~g~~v~~t~vG~  311 (448)
                      |  |     |=..+-++|+ .+|.+|.+.+.+-
T Consensus       213 G--I-----TRd~VitlA~ke~G~~V~E~~I~R  238 (302)
T TIGR01122       213 G--I-----TRDTVITLAKKELGIEVVEQRISR  238 (302)
T ss_pred             C--C-----CHHHHHHHHHHCCCEEEEECCCCH
T ss_conf             8--8-----888999998510862688233572


No 122
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=23.95  E-value=48  Score=13.45  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHCCCCC--CEEEEECCCCCCCCCCCCC--CC
Q ss_conf             6543333222123332222222322235577442210137776----42002343--0367531552100013322--37
Q gi|254780544|r  186 GASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQ----RKVHEVRA--DIGIALDGDGDRVIIVDEK--GA  257 (448)
Q Consensus       186 G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~----~~v~~~~a--d~Gia~DgD~DR~~ivd~~--G~  257 (448)
                      +++++.=.++|+++|.+...+-..-|......+...++...|+    +.+.+...  .+.++    ||.+.++|++  |+
T Consensus         8 AS~SPrR~elL~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~~~~~Vig----aDtvv~ldgrilgK   83 (193)
T COG0424           8 ASSSPRRRELLEQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARLPPDALVIG----ADTVVVLDGRILGK   83 (193)
T ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE----CCEEEEECCEEECC
T ss_conf             46998999999987998198068999876657897999999999999999984799987996----27499989998269


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             553311356777765532002234333221136004443200121111123321101111
Q gi|254780544|r  258 IVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEY  317 (448)
Q Consensus       258 ~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~  317 (448)
                      .-+.++-..++     .+-  +|..  +.+.|...+-+-.+..-..+..|+|-|+.+.+.
T Consensus        84 P~~~~eA~~~L-----~~l--SG~~--h~v~T~v~li~~~~~~~~~~~~t~V~F~~ls~~  134 (193)
T COG0424          84 PKDEEEAREML-----RKL--SGRT--HQVYTGVALIDPGKRVQSEVEVTKVRFRTLSDE  134 (193)
T ss_pred             CCCHHHHHHHH-----HHH--CCCE--EEEEEEEEEEECCCEEEEEEEEEEEEECCCCHH
T ss_conf             99999999999-----984--6986--999999999977973899999789997559999


No 123
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=23.75  E-value=48  Score=13.43  Aligned_cols=27  Identities=19%  Similarity=0.126  Sum_probs=11.1

Q ss_pred             EEECCCCCCCC----CCCCCCCCCCCCCCCC
Q ss_conf             98446654333----3222123332222222
Q gi|254780544|r  181 VDCANGASYKV----APEVFWELGADVVVIG  207 (448)
Q Consensus       181 vD~~~G~~~~~----~~~il~~lg~~~~~i~  207 (448)
                      .|+..|..+.-    +.++.++.|.++..+.
T Consensus       106 ~Df~FG~~r~G~~~~L~~~~~~~~~~v~~i~  136 (179)
T cd02064         106 FDFRFGKGRSGNAELLRELGEKYGFEVEIVP  136 (179)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCEEEEEC
T ss_conf             7302578988799999999987296499937


No 124
>PRK07952 DNA replication protein DnaC; Validated
Probab=23.72  E-value=48  Score=13.42  Aligned_cols=32  Identities=9%  Similarity=0.162  Sum_probs=14.5

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             38999668779799999999999978987999
Q gi|254780544|r   44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFI   75 (448)
Q Consensus        44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~   75 (448)
                      .++...+.-..--.++.+++..|+..|..|+.
T Consensus        98 gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf  129 (242)
T PRK07952         98 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLI  129 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             17997899997899999999999987994999


No 125
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963   Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes.   Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected.   This entry represents the bacterial proteins..
Probab=23.55  E-value=37  Score=14.14  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=32.0

Q ss_pred             EEE-EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEE---EECCCCHHHHHH
Q ss_conf             015-5068778899999999999999972379983899966877979999999999997898799---962678089999
Q gi|254780544|r   11 IRG-KSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAF---ILGPIPSPAVAM   86 (448)
Q Consensus        11 iRG-~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~---~~g~~ptP~l~~   86 (448)
                      +.| .-+ +-+++..+.+++.=+..+.+. +-.=.||||-=+=      -|-..  +...|++=.   .+|+..|=+-+.
T Consensus        13 L~g~~~~-f~ID~~~l~~iA~eik~~~~~-G~evgIViGGGNI------fRG~~--~~~~Gi~R~~aDymGMLATviNgl   82 (236)
T TIGR02075        13 LAGKDSQ-FGIDPKRLNRIANEIKEVVKK-GIEVGIVIGGGNI------FRGKS--AAELGIDRVSADYMGMLATVINGL   82 (236)
T ss_pred             HCCCCCC-CCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHH------HHHHH--HHHCCCCEEECCCCCHHHHHHHHH
T ss_conf             2478888-642689999999999999867-9489999778278------87788--987489611143230589999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780544|r   87 LT   88 (448)
Q Consensus        87 a~   88 (448)
                      +.
T Consensus        83 aL   84 (236)
T TIGR02075        83 AL   84 (236)
T ss_pred             HH
T ss_conf             99


No 126
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=23.54  E-value=49  Score=13.40  Aligned_cols=43  Identities=23%  Similarity=0.429  Sum_probs=26.0

Q ss_pred             CCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCHH
Q ss_conf             96520--3358601550687788999999999999999723799838-99966877979
Q gi|254780544|r    1 MKRRF--FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRV-VIGKDTRLSGY   56 (448)
Q Consensus         1 m~r~l--FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~v-vVg~D~R~~s~   56 (448)
                      |.|.|  .|..||    +..  |  .+.+++.|++..     .+++| +||||....|-
T Consensus         1 m~~~iaiyGKGGI----GKS--T--Tt~NLaaALA~l-----~GkrVl~IgcDPk~dST   46 (275)
T PRK13233          1 MTRKIAIYGKGGI----GKS--T--TTQNTAAAMAHF-----HDKKVFIHGCDPKADST   46 (275)
T ss_pred             CCCEEEEECCCCC----CHH--H--HHHHHHHHHHHH-----CCCEEEEECCCCCCCHH
T ss_conf             9738999899854----465--4--599999999964-----79889997978876136


No 127
>pfam03900 Porphobil_deamC Porphobilinogen deaminase, C-terminal domain.
Probab=23.52  E-value=46  Score=13.53  Aligned_cols=37  Identities=24%  Similarity=0.489  Sum_probs=24.2

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             6753155210001332237553311356777765532
Q gi|254780544|r  239 GIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSH  275 (448)
Q Consensus       239 Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~  275 (448)
                      |+.+++||.+..-....|.+-++..++--+++.|+++
T Consensus        37 ~~v~s~DG~~~~~~~~~g~~~~a~~lG~~lA~~Ll~~   73 (74)
T pfam03900        37 GLVGSPDGTRVFEIEVRGDIEDAEELGKKLAEELLAQ   73 (74)
T ss_pred             EEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHC
T ss_conf             9999898988999999985899999999999999968


No 128
>PRK01215 competence damage-inducible protein A; Provisional
Probab=22.90  E-value=50  Score=13.33  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCC-----EEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89999987655430788659996779822-----7999961599899999999999998752
Q gi|254780544|r  390 SSIVQAIADAESELRGIDRLIVRASGTES-----LIRIMAEGDDLSRIKRIVDDLAKVIPMI  446 (448)
Q Consensus       390 ~~i~~~~~~~~~~~~~~~w~liRpSgTEp-----~iriy~Ea~~~~~~~~l~~~~~~~i~~i  446 (448)
                      ..+.+.+.+...+..+. .+--.|.+.|-     -+|+.+.+.|++.++++++.+.+.|+++
T Consensus       192 S~la~~L~~l~~~~p~v-~i~syP~~~~~~~~~v~lrlta~a~~~~ea~~~i~~~~~~ire~  252 (264)
T PRK01215        192 SDLAPYIKEVMKEYPRV-YVKSHPKGIEVSKPLLEIHVYASAESEEEAEEKVEKALERLREL  252 (264)
T ss_pred             HHHHHHHHHHHHHCCCC-EEECCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999878997-48658975415677299999998099999999999999999999


No 129
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237   This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=22.87  E-value=41  Score=13.89  Aligned_cols=19  Identities=26%  Similarity=0.183  Sum_probs=11.3

Q ss_pred             HHHHHHCCCCEECCCCCCE
Q ss_conf             1111102897001346623
Q gi|254780544|r  314 IMEYMKNNGFNVGGEQSGH  332 (448)
Q Consensus       314 i~~~~~~~~~~~g~E~sg~  332 (448)
                      .++.|+..+-++.||--|+
T Consensus       298 aakQM~~gGgm~~F~lKgg  316 (392)
T TIGR01328       298 AAKQMKKGGGMLAFELKGG  316 (392)
T ss_pred             HHHHHHCCCCEEEEEECCC
T ss_conf             9998740487277543256


No 130
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.61  E-value=51  Score=13.29  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=11.9

Q ss_pred             HHHHHHHCCCCCCEEEEECCCC
Q ss_conf             7776420023430367531552
Q gi|254780544|r  225 LSLQRKVHEVRADIGIALDGDG  246 (448)
Q Consensus       225 ~~l~~~v~~~~ad~Gia~DgD~  246 (448)
                      ..|.+.+++.+||||+.|=|.+
T Consensus        36 mklGdvM~~e~Ad~GiSFCGSG   57 (115)
T TIGR03577        36 MKLGDVMKQENADLGISFCGSG   57 (115)
T ss_pred             CHHHHHHHHHCCCCCEEEECCC
T ss_conf             2077777653567235874589


No 131
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=22.37  E-value=51  Score=13.26  Aligned_cols=128  Identities=26%  Similarity=0.414  Sum_probs=64.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf             87797999999999999789879996267808999999871992-58988654777520125640365456783578999
Q gi|254780544|r   51 TRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRAD-VGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRI  129 (448)
Q Consensus        51 ~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~-gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~I  129 (448)
                      .|.++..+...+.+-....|..|+.+|..+ .++.-++..+... .++.|...|+|+              +.+++.+.|
T Consensus        29 ~rv~G~dl~~~ll~~~~~~~~~v~llG~~~-~~~~~~~~~l~~~yP~l~i~g~~~g~--------------f~~~e~~~i   93 (172)
T pfam03808        29 ERVAGTDLIPALLERAAERGKRVFLLGGKP-GVLEKAAARLRARYPGLRIVGTHDGY--------------FSPEEEEAI   93 (172)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHHHCCCCEEEEEECCC--------------CCHHHHHHH
T ss_conf             516859999999999986498389980888-99999999999887995599987999--------------986899999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9996156643344543322211135425666887763263102118966999844665433332221233322
Q gi|254780544|r  130 ETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGAD  202 (448)
Q Consensus       130 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~  202 (448)
                      .+.+.+.....+  .=.+|..     -.+.++..+++..+..+.. ..--.+|..-|. ...+|+++.++|.+
T Consensus        94 ~~~I~~~~~div--~vglG~P-----kQE~~~~~~~~~~~~~v~~-~vGa~~d~~aG~-~~raP~w~~~~gLE  157 (172)
T pfam03808        94 IEAINASGPDLL--FVGLGAP-----KQEKWIARNRARLPVPVFI-GVGGSFDFLAGT-VKRAPKWMRKLGLE  157 (172)
T ss_pred             HHHHHHCCCCEE--EEECCCC-----HHHHHHHHHHHHCCCCEEE-ECCCHHHHHHCC-CCCCCHHHHHHCCH
T ss_conf             999984599999--9956981-----7799999999877998798-524012466378-56477999995859


No 132
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=22.22  E-value=52  Score=13.24  Aligned_cols=86  Identities=17%  Similarity=0.095  Sum_probs=51.7

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC---C-CHHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHH
Q ss_conf             06877889999999999999997237998389996687---7-979999999999997898799-962678089999998
Q gi|254780544|r   15 SNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTR---L-SGYMLENSLVAGFTAAGMDAF-ILGPIPSPAVAMLTR   89 (448)
Q Consensus        15 ~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R---~-~s~~~~~~~~~gl~~~G~~V~-~~g~~ptP~l~~a~~   89 (448)
                      +|.  .+.+.+..+-.|-      +..+++|++..-..   + ....+...+..-....++.|. .+.-+.+...-...-
T Consensus        21 fNv--~~~e~~~avi~AA------ee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~~~~ai   92 (283)
T pfam01116        21 FNV--NNLETINAVLEAA------EEANSPVIIQVSPGAAKYAGAEALAAMVRAAAEKYSVPVALHLDHGASFEGILEAI   92 (283)
T ss_pred             EEE--CCHHHHHHHHHHH------HHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf             767--9899999999999------99699999996844675589999999999999977998999667779999999999


Q ss_pred             HHCCCEEEEEEECCCCCCCE
Q ss_conf             71992589886547775201
Q gi|254780544|r   90 SLRADVGVMISASHNPYQDN  109 (448)
Q Consensus        90 ~~~~~gGI~iTaSHNP~~~n  109 (448)
                      +.++. .||+-+||-|.+.|
T Consensus        93 ~~Gft-SVM~DgS~l~~eeN  111 (283)
T pfam01116        93 EAGFS-SVMIDGSHLPFEEN  111 (283)
T ss_pred             HHCCC-EEEEECCCCCHHHH
T ss_conf             81998-69863897999999


No 133
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.57  E-value=53  Score=13.16  Aligned_cols=56  Identities=27%  Similarity=0.422  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHC-CCEEEEEEECCCCC
Q ss_conf             6877979999999999997898799962678089999998719-92589886547775
Q gi|254780544|r   50 DTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLR-ADVGVMISASHNPY  106 (448)
Q Consensus        50 D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~-~~gGI~iTaSHNP~  106 (448)
                      -.|..+..+...+.+-....+..|+.+|..+ .++.-+...+. .-.++.|..+|+|+
T Consensus        26 ~~rv~G~dl~~~ll~~~~~~~~~v~llG~~~-~~~~~~~~~l~~~yp~l~i~g~~~g~   82 (171)
T cd06533          26 PERVTGSDLMPALLELAAQKGLRVFLLGAKP-EVLEKAAERLRARYPGLKIVGYHHGY   82 (171)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             8626819999999999986497499980898-99999999999788993799987899


No 134
>PRK03442 consensus
Probab=21.36  E-value=54  Score=13.13  Aligned_cols=42  Identities=7%  Similarity=0.139  Sum_probs=22.6

Q ss_pred             EECCCCCCEEEEECCCCCCCCCC--CCCHHHHHHHHCCCCHHHH
Q ss_conf             00134662365301000144423--3202466777558888999
Q gi|254780544|r  324 NVGGEQSGHIILSDYGSTGDGLV--AALQVLRYIKQYDKPVSTI  365 (448)
Q Consensus       324 ~~g~E~sg~~~~~~~~~~~Dgi~--a~l~~le~l~~~~~~l~~l  365 (448)
                      .++.|.-|..++.....+.+.++  ++..+.++|.+.|.++.+|
T Consensus       163 ~Y~Iqg~g~~li~~I~Gd~~nVvGLPl~~l~~lL~~~G~~~~~~  206 (213)
T PRK03442        163 GFTLDGLGGWFIDGVDGDPSNVIGLSLPLLRRLLQRVGLSVAAL  206 (213)
T ss_pred             EEEECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf             74341075750612288752024588999999999859985574


No 135
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=21.21  E-value=27  Score=15.01  Aligned_cols=21  Identities=14%  Similarity=0.188  Sum_probs=9.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHH
Q ss_conf             860155068778899999999
Q gi|254780544|r    9 DGIRGKSNTFPITPNFMMRIG   29 (448)
Q Consensus         9 ~GiRG~~~~~~~t~~~v~~i~   29 (448)
                      +++.|+.+-+.+.++...-+-
T Consensus        27 yDltGLsggf~i~~~~~~Lle   47 (346)
T TIGR03576        27 YDLTGLAGGFKIDEEDLELLE   47 (346)
T ss_pred             CCCCCCCCCCCCCHHHHHHHH
T ss_conf             103445678443786888999


No 136
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=21.04  E-value=55  Score=13.09  Aligned_cols=16  Identities=13%  Similarity=0.144  Sum_probs=5.9

Q ss_pred             CCCHHHHHHHHHHHHC
Q ss_conf             6783578999999615
Q gi|254780544|r  120 KVSTDIEDRIETLLED  135 (448)
Q Consensus       120 ~i~~~~~~~Ie~~~~~  135 (448)
                      .......++++.+++.
T Consensus        20 ~~~~~~~~~~~~~~~~   35 (469)
T PTZ00079         20 NYEGLPDQEMNELYER   35 (469)
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             6456508889999999


No 137
>pfam00864 P2X_receptor ATP P2X receptor.
Probab=20.66  E-value=56  Score=13.04  Aligned_cols=15  Identities=13%  Similarity=0.178  Sum_probs=9.7

Q ss_pred             CCCCEEEEECCCCCH
Q ss_conf             998389996687797
Q gi|254780544|r   41 KHRRVVIGKDTRLSG   55 (448)
Q Consensus        41 ~~~~vvVg~D~R~~s   55 (448)
                      ...++|+-+|-|..-
T Consensus         4 ~T~K~V~iks~rvG~   18 (374)
T pfam00864         4 ETPKSVVIKSKKVGI   18 (374)
T ss_pred             CCCEEEEEEEEEEEH
T ss_conf             664599997257329


No 138
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706   N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined .   The pathway from glutamate to arginine is:   NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) ,  is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=20.35  E-value=51  Score=13.30  Aligned_cols=19  Identities=21%  Similarity=0.295  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHCCCEEEEE
Q ss_conf             9999999999789879996
Q gi|254780544|r   58 LENSLVAGFTAAGMDAFIL   76 (448)
Q Consensus        58 ~~~~~~~gl~~~G~~V~~~   76 (448)
                      .+..++--|.+.|+.|+|+
T Consensus        86 vs~~~~p~~l~~g~~ViDL  104 (361)
T TIGR01850        86 VSMELAPELLEAGVKVIDL  104 (361)
T ss_pred             HHHHHHHHHHHCCCEEEEC
T ss_conf             5699999998479869988


No 139
>PRK12681 cysB transcriptional regulator CysB; Reviewed
Probab=20.20  E-value=57  Score=12.98  Aligned_cols=196  Identities=16%  Similarity=0.200  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             78089999998719925898865477752012564036545678--3578999999615664334454332221113542
Q gi|254780544|r   79 IPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVS--TDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGV  156 (448)
Q Consensus        79 ~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~--~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (448)
                      ++-|.+|..++.+....|              +++|..+|..+.  .+..+.+-...++-    +..             
T Consensus        28 iSQPavS~qIk~LE~eLG--------------v~LF~R~gr~l~~LT~aG~~l~~~a~~i----L~~-------------   76 (324)
T PRK12681         28 TSQPGISKQVRMLEDELG--------------IQIFARSGKHLTQVTPAGEEIIRIAREI----LSK-------------   76 (324)
T ss_pred             CCHHHHHHHHHHHHHHHC--------------CEEEEECCCCCCCCCHHHHHHHHHHHHH----HHH-------------
T ss_conf             977799999999999849--------------9618988998886098899999999999----999-------------


Q ss_pred             HHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             56668877632631021189669998446654333322212333222222232223557744221013777642002343
Q gi|254780544|r  157 HDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRA  236 (448)
Q Consensus       157 ~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~a  236 (448)
                          ++.+++....-.....-++-|-+.+..+..++|.++.++--..      |+   .+.+-...+...+.+.+.+..+
T Consensus        77 ----~~~i~~~~~~~~~~~~G~L~Ia~~~t~a~~~LP~~i~~F~~~~------P~---v~l~l~~~~~~~i~~~l~~g~~  143 (324)
T PRK12681         77 ----VESIKSVAGEHTWPDKGSLYIATTHTQARYALPPVIKGFIKRY------PR---VSLHMHQGSPTQIAEAAAKGEA  143 (324)
T ss_pred             ----HHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHC------CC---CCEEEEECCHHHHHHHHHCCCC
T ss_conf             ----9999999997528876349998535888877259999999878------99---8446531787999999987998


Q ss_pred             CEEEEECCCC--CCCC----------CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHCCCC
Q ss_conf             0367531552--1000----------1332237553311356777765532002234333221--136004443200121
Q gi|254780544|r  237 DIGIALDGDG--DRVI----------IVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTV--MSNIGLERFIAGLGL  302 (448)
Q Consensus       237 d~Gia~DgD~--DR~~----------ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v--~ss~~i~~~a~~~g~  302 (448)
                      |+|++.++-.  +.+.          ++-..+..+....-..  ...+...     +-|..+.  ..-..+++..++.|.
T Consensus       144 DlaI~~e~~~~~~dl~~~P~~~~~~~vvvp~~HPLa~~~~it--l~dL~~~-----plI~~~~g~~~R~~id~~f~~~g~  216 (324)
T PRK12681        144 DFAIATEALHLYDDLIMLPCYHWNRSVVVPPDHPLAKKKKLT--IEELAQY-----PLVTYVFGFTGRSELDTAFNRAGL  216 (324)
T ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC--HHHHCCC-----CEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             723124666668874686400032224579999655799999--9998699-----859614998299999999998899


Q ss_pred             CCCC-CCCCCCCHHHHHHCCCCEE
Q ss_conf             1111-2332110111110289700
Q gi|254780544|r  303 SLKR-TEVGDRYIMEYMKNNGFNV  325 (448)
Q Consensus       303 ~v~~-t~vG~k~i~~~~~~~~~~~  325 (448)
                      +... ..+........|.+.+..+
T Consensus       217 ~P~iv~e~~~~~~I~~~V~~GlGV  240 (324)
T PRK12681        217 TPRIVFTATDADVIKTYVRLGLGV  240 (324)
T ss_pred             CCEEEEEECCHHHHHHHHHHCCEE
T ss_conf             760799989899999999959913


No 140
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=20.16  E-value=57  Score=12.98  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=32.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHHHHHHHCCCE--EEEECCCC-HHHHHHHH
Q ss_conf             889999999999999997237998389996687797--99999999999978987--99962678-08999999
Q gi|254780544|r   20 ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSG--YMLENSLVAGFTAAGMD--AFILGPIP-SPAVAMLT   88 (448)
Q Consensus        20 ~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s--~~~~~~~~~gl~~~G~~--V~~~g~~p-tP~l~~a~   88 (448)
                      +-+.++.++...+.   .......++.||-|.|..+  ..+...+.. +...|++  ++.+.... +=+-+|.-
T Consensus        32 lP~~Ll~~~~~~~~---~~~~~~~~lAi~iD~R~~~~~~~~~~~~~~-l~~~~~~~~ilFLdA~~~~LirRy~e  101 (284)
T pfam03668        32 LPPQLLPRLVDFLL---AAGSRISSVAVVMDVRNRPFSGDLDEQRNE-LATRAITPRILFLEADDDTLVRRYSD  101 (284)
T ss_pred             CCHHHHHHHHHHHH---HCCCCCCEEEEEEECCCCCCHHHHHHHHHH-HHHCCCCCEEEEEECCCHHHHHHHHH
T ss_conf             89999999999986---247876526899963665333769999999-98669982699997880899998887


No 141
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.15  E-value=57  Score=12.98  Aligned_cols=15  Identities=7%  Similarity=0.038  Sum_probs=7.1

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             989999999999999
Q gi|254780544|r  428 DLSRIKRIVDDLAKV  442 (448)
Q Consensus       428 ~~~~~~~l~~~~~~~  442 (448)
                      +.+.+++++..+.+.
T Consensus       326 ~~~~~~all~~lq~~  340 (342)
T COG3317         326 TGDQADALLAVLQAA  340 (342)
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             388999999999986


No 142
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.05  E-value=51  Score=13.26  Aligned_cols=35  Identities=20%  Similarity=0.117  Sum_probs=18.4

Q ss_pred             CCHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCCCCE
Q ss_conf             600444320012111112332-11011111028970
Q gi|254780544|r  290 NIGLERFIAGLGLSLKRTEVG-DRYIMEYMKNNGFN  324 (448)
Q Consensus       290 s~~i~~~a~~~g~~v~~t~vG-~k~i~~~~~~~~~~  324 (448)
                      +..+.+-|.-+|...+.+--| --++-+.+.+.+.+
T Consensus       260 ggTMarEaAlLGtpaIs~~pGkll~vdk~lie~G~~  295 (346)
T COG1817         260 GGTMAREAALLGTPAISCYPGKLLAVDKYLIEKGLL  295 (346)
T ss_pred             CCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHCCCE
T ss_conf             703788888728834785388533223898866843


No 143
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.03  E-value=53  Score=13.16  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE--CCC
Q ss_conf             8389996687797999999999999789879996--267
Q gi|254780544|r   43 RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL--GPI   79 (448)
Q Consensus        43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~--g~~   79 (448)
                      ..-+=+|...|+...+.+.++.-  ..|...+.+  |+.
T Consensus        51 ~g~~YsR~gNPT~~~lE~~la~L--Egg~~a~~~sSGma   87 (432)
T PRK06702         51 EGYIYTRIGNPTLAAFEQKLAEL--EGGVGAVATASGQA   87 (432)
T ss_pred             CCCEECCCCCHHHHHHHHHHHHH--HCCCCEEEECHHHH
T ss_conf             89603189986799999999998--39982898532899


Done!