Query gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 448
No_of_seqs 148 out of 5530
Neff 8.2
Searched_HMMs 39220
Date Sun May 29 22:59:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780544.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01455 glmM phosphoglucosam 100.0 0 0 819.3 31.7 440 6-445 1-450 (450)
2 cd05802 GlmM GlmM is a bacteri 100.0 0 0 778.9 35.2 433 5-440 1-434 (434)
3 PRK10887 glmM phosphoglucosami 100.0 0 0 773.0 35.5 441 2-446 3-445 (445)
4 cd05805 MPG1_transferase GTP-m 100.0 0 0 735.8 33.1 428 5-443 1-441 (441)
5 cd05803 PGM_like4 This PGM-lik 100.0 0 0 735.4 33.2 429 5-439 1-444 (445)
6 cd05800 PGM_like2 This PGM-lik 100.0 0 0 732.9 34.9 430 6-442 3-460 (461)
7 cd03087 PGM_like1 This archaea 100.0 0 0 724.7 32.2 424 5-443 1-439 (439)
8 cd03089 PMM_PGM The phosphoman 100.0 0 0 717.8 34.8 425 5-443 1-443 (443)
9 COG1109 {ManB} Phosphomannomut 100.0 0 0 711.5 35.2 441 2-447 6-461 (464)
10 PRK09542 manB phosphomannomuta 100.0 0 0 702.0 31.9 428 6-444 1-443 (445)
11 cd05799 PGM2 This CD includes 100.0 0 0 696.8 30.9 438 6-443 4-486 (487)
12 cd05801 PGM_like3 This bacteri 100.0 0 0 690.2 30.2 439 3-443 19-522 (522)
13 PRK07564 phosphoglucomutase; V 100.0 0 0 656.3 32.6 436 5-446 41-541 (544)
14 cd03088 ManB ManB is a bacteri 100.0 0 0 643.2 32.0 416 6-438 2-457 (459)
15 PTZ00150 phosphoglucomutase; P 100.0 0 0 612.0 30.3 439 3-443 47-578 (593)
16 cd03084 phosphohexomutase The 100.0 0 0 617.0 24.3 351 5-443 1-355 (355)
17 cd03085 PGM1 Phosphoglucomutas 100.0 0 0 608.3 30.8 423 5-430 12-512 (548)
18 TIGR01132 pgm phosphoglucomuta 100.0 0 0 538.8 21.3 445 2-446 38-551 (553)
19 KOG1220 consensus 100.0 0 0 508.6 23.9 426 1-426 56-568 (607)
20 cd03086 PGM3 PGM3 (phosphogluc 100.0 0 0 459.2 22.6 349 94-443 36-513 (513)
21 COG0033 Pgm Phosphoglucomutase 100.0 0 0 447.4 21.0 440 3-447 15-520 (524)
22 KOG0625 consensus 100.0 0 0 370.5 26.9 419 6-426 18-516 (558)
23 PTZ00302 N-acetylglucosamine-p 100.0 0 0 374.3 20.5 271 176-446 246-600 (604)
24 pfam02878 PGM_PMM_I Phosphoglu 100.0 2.1E-42 0 281.2 15.9 137 3-139 1-137 (138)
25 KOG2537 consensus 100.0 1.9E-37 4.8E-42 250.6 20.3 353 40-446 122-538 (539)
26 pfam02880 PGM_PMM_III Phosphog 99.9 7.4E-25 1.9E-29 172.8 5.9 110 260-372 1-110 (111)
27 pfam02879 PGM_PMM_II Phosphogl 99.8 7.5E-22 1.9E-26 154.3 4.9 99 158-256 1-103 (103)
28 cd03086 PGM3 PGM3 (phosphogluc 99.2 2.6E-11 6.7E-16 89.2 5.6 62 42-104 102-163 (513)
29 PTZ00302 N-acetylglucosamine-p 99.2 2.9E-11 7.5E-16 88.9 4.4 44 92-135 72-115 (604)
30 pfam00408 PGM_PMM_IV Phosphogl 99.0 2.1E-09 5.4E-14 77.4 8.0 59 386-444 12-71 (71)
31 KOG2537 consensus 97.9 7.2E-06 1.8E-10 55.6 3.1 40 90-129 56-95 (539)
32 COG0426 FpaA Uncharacterized f 93.7 0.51 1.3E-05 25.6 8.5 19 106-124 34-52 (388)
33 PRK12615 galactose-6-phosphate 93.2 0.24 6.2E-06 27.6 5.4 57 44-102 2-67 (171)
34 PRK08622 galactose-6-phosphate 92.6 0.74 1.9E-05 24.6 7.3 57 44-102 2-67 (171)
35 PRK12613 galactose-6-phosphate 87.7 2 5E-05 22.0 5.9 57 44-102 2-64 (141)
36 cd02071 MM_CoA_mut_B12_BD meth 87.7 1.7 4.2E-05 22.5 5.5 52 46-101 6-58 (122)
37 TIGR01501 MthylAspMutase methy 87.6 1.3 3.4E-05 23.0 5.0 55 43-101 2-60 (134)
38 PRK09426 methylmalonyl-CoA mut 87.1 2.2 5.6E-05 21.7 7.9 22 357-378 525-547 (715)
39 pfam02502 LacAB_rpiB Ribose/Ga 86.4 2.4 6.1E-05 21.5 7.6 57 44-102 1-66 (140)
40 cd02067 B12-binding B12 bindin 86.1 2.5 6.3E-05 21.4 8.0 52 47-102 7-59 (119)
41 PRK05571 ribose-5-phosphate is 82.6 3.5 9E-05 20.4 7.5 57 44-102 2-68 (149)
42 TIGR02707 butyr_kinase butyrat 81.9 3.6 9.3E-05 20.4 5.1 75 291-370 159-241 (353)
43 cd02070 corrinoid_protein_B12- 81.0 4 0.0001 20.1 10.5 60 42-102 82-142 (201)
44 TIGR00689 rpiB_lacA_lacB sugar 79.5 4.5 0.00012 19.8 4.9 57 45-103 1-67 (146)
45 KOG0061 consensus 79.0 4.7 0.00012 19.7 5.7 79 20-109 201-279 (613)
46 cd02069 methionine_synthase_B1 78.9 4.7 0.00012 19.7 7.9 56 42-101 88-147 (213)
47 PTZ00215 ribose 5-phosphate is 78.4 4.9 0.00012 19.6 7.2 58 43-102 3-71 (156)
48 COG2185 Sbm Methylmalonyl-CoA 76.4 5.6 0.00014 19.2 6.8 57 40-100 10-70 (143)
49 PRK05569 flavodoxin; Provision 76.2 5.6 0.00014 19.2 5.2 40 43-82 2-42 (141)
50 PRK00148 Maf-like protein; Rev 75.9 4.9 0.00012 19.6 4.2 167 186-365 7-193 (195)
51 COG5012 Predicted cobalamin bi 75.5 5.9 0.00015 19.1 7.0 52 43-94 105-157 (227)
52 TIGR02370 pyl_corrinoid methyl 75.4 3.1 8E-05 20.8 3.1 52 47-102 94-146 (201)
53 COG1732 OpuBC Periplasmic glyc 74.9 6.1 0.00016 19.0 11.2 208 40-276 30-256 (300)
54 PRK09414 glutamate dehydrogena 74.8 6.1 0.00016 19.0 5.3 149 19-209 97-261 (446)
55 TIGR01120 rpiB ribose 5-phosph 73.7 4.2 0.00011 20.0 3.4 57 44-102 1-66 (143)
56 COG0698 RpiB Ribose 5-phosphat 72.7 6.9 0.00018 18.6 6.2 57 44-102 2-68 (151)
57 PRK03692 putative UDP-N-acetyl 66.9 9.2 0.00023 17.9 8.7 127 51-202 89-216 (246)
58 PRK05568 flavodoxin; Provision 65.4 9.8 0.00025 17.7 6.9 40 43-82 2-42 (142)
59 PRK08621 galactose-6-phosphate 65.1 10 0.00025 17.7 7.2 57 44-102 2-65 (142)
60 pfam04069 OpuAC Substrate bind 64.8 10 0.00026 17.6 8.7 51 43-93 1-51 (256)
61 TIGR01163 rpe ribulose-phospha 61.1 5.4 0.00014 19.3 1.9 39 196-244 77-115 (216)
62 TIGR00863 P2X cation transport 61.0 7.2 0.00018 18.6 2.5 13 40-52 16-28 (377)
63 cd02072 Glm_B12_BD B12 binding 60.7 12 0.00031 17.2 7.4 51 47-101 7-58 (128)
64 PRK02261 methylaspartate mutas 56.5 14 0.00036 16.7 7.8 56 42-101 3-62 (137)
65 PRK05452 anaerobic nitric oxid 56.1 14 0.00037 16.7 9.2 133 72-209 128-291 (479)
66 cd05313 NAD_bind_2_Glu_DH NAD( 54.2 15 0.00039 16.5 5.4 29 176-204 146-174 (254)
67 pfam03141 DUF248 Putative meth 53.0 16 0.00041 16.4 3.3 33 157-189 98-130 (506)
68 COG2081 Predicted flavoprotein 52.7 16 0.00042 16.3 3.6 96 247-353 142-252 (408)
69 TIGR01361 DAHP_synth_Bsub phos 52.6 4.8 0.00012 19.6 0.5 38 40-77 22-59 (262)
70 TIGR00959 ffh signal recogniti 52.1 17 0.00042 16.3 7.4 88 32-134 122-217 (439)
71 PRK10834 hypothetical protein; 52.1 17 0.00042 16.3 7.6 96 5-105 50-151 (239)
72 PRK02676 consensus 51.7 17 0.00043 16.3 3.2 27 186-212 8-34 (196)
73 TIGR03335 F390_ftsA coenzyme F 51.4 17 0.00043 16.2 10.8 50 43-93 100-157 (445)
74 PRK03525 crotonobetainyl-CoA:c 50.4 7.1 0.00018 18.6 1.0 26 69-94 13-39 (405)
75 PRK04338 N(2),N(2)-dimethylgua 49.6 18 0.00046 16.0 7.6 80 6-102 59-154 (376)
76 pfam06574 FAD_syn FAD syntheta 48.9 19 0.00048 16.0 3.5 30 179-208 113-146 (158)
77 PRK11466 hybrid sensory histid 48.6 19 0.00048 15.9 5.6 89 44-135 511-618 (912)
78 COG1867 TRM1 N2,N2-dimethylgua 45.8 21 0.00053 15.7 5.5 82 6-102 60-155 (380)
79 PRK03098 consensus 42.4 24 0.0006 15.4 3.1 27 187-213 4-30 (185)
80 PRK02289 4-oxalocrotonate taut 41.5 24 0.00062 15.3 4.4 27 418-444 2-29 (60)
81 PRK05627 bifunctional riboflav 39.3 26 0.00067 15.1 3.6 34 175-208 114-151 (303)
82 PRK05788 cobalamin biosynthesi 38.6 23 0.00059 15.4 2.2 12 293-304 136-147 (338)
83 cd01534 4RHOD_Repeat_3 Member 38.5 12 0.00032 17.1 0.8 43 164-206 44-86 (95)
84 TIGR00222 panB 3-methyl-2-oxob 38.4 18 0.00045 16.1 1.5 47 45-100 19-83 (267)
85 TIGR00700 GABAtrnsam 4-aminobu 38.3 14 0.00036 16.8 1.0 97 247-367 187-285 (427)
86 COG0196 RibF FAD synthase [Coe 38.1 27 0.0007 14.9 2.8 46 158-207 104-152 (304)
87 PRK13055 putative lipid kinase 38.0 23 0.0006 15.4 2.1 33 334-372 210-242 (334)
88 pfam01474 DAHP_synth_2 Class-I 38.0 28 0.0007 14.9 4.5 30 20-52 38-67 (437)
89 COG1004 Ugd Predicted UDP-gluc 37.8 28 0.00071 14.9 4.9 15 293-307 223-237 (414)
90 KOG2451 consensus 37.7 28 0.00071 14.9 3.6 35 53-88 171-205 (503)
91 PRK06696 uridine kinase; Valid 37.6 28 0.00071 14.9 6.7 51 22-76 8-60 (227)
92 pfam02706 Wzz Chain length det 37.6 28 0.00071 14.9 4.1 35 407-441 104-138 (139)
93 pfam08886 GshA Glutamate-cyste 36.3 29 0.00075 14.8 9.6 275 19-334 53-341 (404)
94 PRK08114 cystathionine beta-ly 34.9 12 0.00031 17.1 0.3 37 43-79 52-88 (395)
95 TIGR01368 CPSaseIIsmall carbam 34.7 31 0.00079 14.6 6.6 224 32-305 72-323 (383)
96 TIGR00512 aIF-2BI_fam translat 34.6 31 0.0008 14.6 3.5 23 246-271 208-232 (306)
97 TIGR01702 CO_DH_cata carbon-mo 32.9 33 0.00085 14.4 5.6 76 45-128 295-381 (647)
98 TIGR01137 cysta_beta cystathio 32.8 30 0.00077 14.7 2.0 53 27-88 77-132 (527)
99 PRK00238 consensus 32.6 34 0.00086 14.4 4.2 27 186-212 7-33 (198)
100 TIGR01780 SSADH succinic semia 30.7 36 0.00092 14.2 3.4 62 52-114 129-196 (454)
101 TIGR01879 hydantase amidase, h 30.6 16 0.00042 16.3 0.3 57 56-118 31-90 (406)
102 TIGR02408 ectoine_ThpD ectoine 30.0 25 0.00064 15.2 1.2 44 179-226 221-270 (278)
103 TIGR02877 spore_yhbH sporulati 29.7 37 0.00094 14.2 2.0 28 331-358 308-335 (392)
104 PRK08185 hypothetical protein; 29.6 38 0.00097 14.1 9.2 87 14-109 17-107 (283)
105 TIGR02546 III_secr_ATP type II 29.2 38 0.00098 14.0 5.1 24 229-260 172-195 (430)
106 COG2085 Predicted dinucleotide 28.9 39 0.00099 14.0 8.5 159 27-208 11-180 (211)
107 PRK11679 lipoprotein; Provisio 28.9 25 0.00065 15.1 1.1 37 408-444 304-343 (345)
108 PRK07580 Mg-protoporphyrin IX 28.8 38 0.00096 14.1 1.9 50 157-209 45-94 (230)
109 TIGR01330 bisphos_HAL2 3'(2'), 28.3 40 0.001 13.9 3.4 78 210-300 109-192 (382)
110 cd06395 PB1_Map2k5 PB1 domain 27.9 30 0.00076 14.7 1.3 26 242-274 47-72 (91)
111 cd05566 PTS_IIB_galactitol PTS 27.6 41 0.001 13.9 6.7 66 43-114 1-67 (89)
112 COG0124 HisS Histidyl-tRNA syn 27.5 5 0.00013 19.5 -2.7 59 77-135 81-153 (429)
113 PRK02102 ornithine carbamoyltr 25.8 44 0.0011 13.7 6.9 191 15-244 11-218 (331)
114 PRK00979 tetrahydromethanopter 25.6 45 0.0011 13.6 3.9 88 153-254 80-171 (310)
115 TIGR00381 cdhD CO dehydrogenas 25.5 38 0.00098 14.1 1.5 76 189-264 146-222 (401)
116 PRK05134 3-demethylubiquinone- 25.4 45 0.0011 13.6 4.3 61 143-209 19-79 (233)
117 pfam06804 Lipoprotein_18 NlpB/ 25.2 30 0.00076 14.7 0.9 91 179-269 202-296 (303)
118 TIGR02401 trehalose_TreY malto 24.8 46 0.0012 13.5 2.2 36 406-441 402-439 (971)
119 PRK11921 metallo-beta-lactamas 24.7 46 0.0012 13.5 9.4 21 427-447 374-394 (395)
120 TIGR02128 G6PI_arch bifunction 24.3 47 0.0012 13.5 2.5 99 178-311 29-129 (338)
121 TIGR01122 ilvE_I branched-chai 24.2 47 0.0012 13.5 2.2 85 209-311 144-238 (302)
122 COG0424 Maf Nucleotide-binding 24.0 48 0.0012 13.5 3.8 119 186-317 8-134 (193)
123 cd02064 Flavokinase_C Riboflav 23.8 48 0.0012 13.4 4.0 27 181-207 106-136 (179)
124 PRK07952 DNA replication prote 23.7 48 0.0012 13.4 7.0 32 44-75 98-129 (242)
125 TIGR02075 pyrH_bact uridylate 23.6 37 0.00094 14.1 1.1 68 11-88 13-84 (236)
126 PRK13233 nifH nitrogenase redu 23.5 49 0.0012 13.4 1.8 43 1-56 1-46 (275)
127 pfam03900 Porphobil_deamC Porp 23.5 46 0.0012 13.5 1.6 37 239-275 37-73 (74)
128 PRK01215 competence damage-ind 22.9 50 0.0013 13.3 8.8 56 390-446 192-252 (264)
129 TIGR01328 met_gam_lyase methio 22.9 41 0.001 13.9 1.2 19 314-332 298-316 (392)
130 TIGR03577 EF_0830 conserved hy 22.6 51 0.0013 13.3 2.4 22 225-246 36-57 (115)
131 pfam03808 Glyco_tran_WecB Glyc 22.4 51 0.0013 13.3 7.2 128 51-202 29-157 (172)
132 pfam01116 F_bP_aldolase Fructo 22.2 52 0.0013 13.2 6.9 86 15-109 21-111 (283)
133 cd06533 Glyco_transf_WecG_TagA 21.6 53 0.0014 13.2 5.5 56 50-106 26-82 (171)
134 PRK03442 consensus 21.4 54 0.0014 13.1 3.6 42 324-365 163-206 (213)
135 TIGR03576 pyridox_MJ0158 pyrid 21.2 27 0.00068 15.0 -0.0 21 9-29 27-47 (346)
136 PTZ00079 NADP-specific glutama 21.0 55 0.0014 13.1 11.6 16 120-135 20-35 (469)
137 pfam00864 P2X_receptor ATP P2X 20.7 56 0.0014 13.0 2.2 15 41-55 4-18 (374)
138 TIGR01850 argC N-acetyl-gamma- 20.4 51 0.0013 13.3 1.3 19 58-76 86-104 (361)
139 PRK12681 cysB transcriptional 20.2 57 0.0015 13.0 4.2 196 79-325 28-240 (324)
140 pfam03668 ATP_bind_2 P-loop AT 20.2 57 0.0015 13.0 2.2 65 20-88 32-101 (284)
141 COG3317 NlpB Uncharacterized l 20.1 57 0.0015 13.0 2.1 15 428-442 326-340 (342)
142 COG1817 Uncharacterized protei 20.0 51 0.0013 13.3 1.2 35 290-324 260-295 (346)
143 PRK06702 O-acetylhomoserine am 20.0 53 0.0014 13.2 1.3 35 43-79 51-87 (432)
No 1
>TIGR01455 glmM phosphoglucosamine mutase; InterPro: IPR006352 This family describes GlmM, phosphoglucosamine mutase, also designated MrsA and YhbF in Escherichia coli , UreC in Helicobacter pylori , and femR315 or FemD in Staphlococcus aureus . It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides..
Probab=100.00 E-value=0 Score=819.25 Aligned_cols=440 Identities=53% Similarity=0.903 Sum_probs=423.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 3358601550687788999999999999999723799---8389996687797999999999999789879996267808
Q gi|254780544|r 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKH---RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSP 82 (448)
Q Consensus 6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~---~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP 82 (448)
|||+||||.+|..+|||++|.+||.|.|.+|+++... ++||||+|||.||.||..|++.||.|.|++|+.+|++|||
T Consensus 1 FGTDGvRG~An~~~lTae~al~LG~AaG~VL~~~~~~~~~~~VviGkDTR~SG~MlE~Al~AGL~s~G~~v~~lG~~PTP 80 (450)
T TIGR01455 1 FGTDGVRGRANQEPLTAELALKLGAAAGRVLRRRGSRKSAPRVVIGKDTRLSGYMLENALVAGLTSAGVDVLLLGPLPTP 80 (450)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf 99874031108876788999999899999974068889885689833788658899999998674078416885577861
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9999998719925898865477752012564036545678357899999961566---4334454332221113542566
Q gi|254780544|r 83 AVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDL---TSYLSCYDSIGHAKRVDGVHDR 159 (448)
Q Consensus 83 ~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 159 (448)
.++|.++++.|++||||+|||||++|||||||+++|.+++.+.|.+||..+++.. +-.......+|+..+.++..++
T Consensus 81 aVAyLT~~~~AdaGvmISASHNP~~DNGIKfFg~~G~KL~D~~E~~IEa~l~~~~r~~~~~~~~~~~lG~~~~~~da~~r 160 (450)
T TIGR01455 81 AVAYLTRTLRADAGVMISASHNPYEDNGIKFFGPEGFKLDDETEAAIEALLDEAAREDTLLLVESEGLGRVKRVPDAVGR 160 (450)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHH
T ss_conf 68887664077333686046774877774441767987988999999876314321677788561246101166416899
Q ss_pred HHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 68877632631021189669998446654333322212333222222232223557744221013777642002343036
Q gi|254780544|r 160 YIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIG 239 (448)
Q Consensus 160 Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~G 239 (448)
|++++++.++....+++||||+||+||+++.++|++|++||++|+.+|++|||.++|.+|+++++..|++.|++++||+|
T Consensus 161 Y~~F~~~t~P~~~~L~GLk~VlDCAnGAay~~AP~~F~~LGAeViAi~~~PdG~NIN~~cGSTH~~~Lq~~V~E~~AdLG 240 (450)
T TIGR01455 161 YIEFLKSTLPRGLSLSGLKVVLDCANGAAYKVAPKVFRELGAEVIAIGVEPDGLNINDGCGSTHLEALQKAVRESGADLG 240 (450)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999984689988787568764104236899999999719869998068886322445686777889988402034401
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 75315521000133223755331135677776553200223433322113600444320012111112332110111110
Q gi|254780544|r 240 IALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMK 319 (448)
Q Consensus 240 ia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~ 319 (448)
|||||||||+.+||++|++++||+++.|+|+++.++...+++.||.|+.||-.+++..++.|++++||+||++|+.+.|.
T Consensus 241 iAfDGDaDR~~~VD~~G~~VDGD~Il~~~A~~~~~~g~L~~N~vV~TvMsNlGle~~L~~~G~~~~rtaVGDRYV~e~l~ 320 (450)
T TIGR01455 241 IAFDGDADRVLAVDENGDIVDGDQILYIIARALKESGELAGNTVVATVMSNLGLEKALEKLGIQLIRTAVGDRYVLEELR 320 (450)
T ss_pred EEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf 00128845289880665954756899999999996057888856067888699999998479828983776878999998
Q ss_pred CCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCC---C-CCCCHHHHHHH
Q ss_conf 2897001346623653010001444233202466777558888999986564230000000567---6-51155899999
Q gi|254780544|r 320 NNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKD---T-SILNSSSIVQA 395 (448)
Q Consensus 320 ~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~---~-~~~~~~~i~~~ 395 (448)
+.++.+|||.|||++|.++.+++||++++|++|++|.+++++||+|.+.+..|||...||++.+ + .+.+...+.+.
T Consensus 321 ~~G~~LGGEQSGH~i~~D~~tTGDGivsALqvl~~m~~~G~~LSeL~~~~~~~PQ~L~NVrv~~r~~k~~~~e~P~v~~A 400 (450)
T TIGR01455 321 EKGLNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKKSGSSLSELASELTKYPQVLVNVRVEDRVGKEAAAEAPAVKAA 400 (450)
T ss_pred HCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 76975520136615550568860799999999999986289789995187427820788887265024740123489999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 87655430788659996779822799996159989999999999999875
Q gi|254780544|r 396 IADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPM 445 (448)
Q Consensus 396 ~~~~~~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~ 445 (448)
+.+.+.++.+.+|++||||||||+|||++|+.|++.++.+.+.+.+.|+.
T Consensus 401 ~~~a~~~lg~~GRillRpSGTEPliRVMVEa~d~~~v~~~~~~~a~vV~~ 450 (450)
T TIGR01455 401 IEDAEAELGGKGRILLRPSGTEPLIRVMVEAADEELVQQLADAIADVVSE 450 (450)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 99999984379808970789978316886448879999999999998439
No 2
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=778.94 Aligned_cols=433 Identities=54% Similarity=0.896 Sum_probs=403.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV 84 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l 84 (448)
||||+||||++|. +|||+++.++|+|+|++++.....++|+||||+|.+|++|++++++||+++|++|+++|.+|||++
T Consensus 1 lFGT~GiRG~~~~-~lt~~~~~~ig~a~~~~~~~~~~~~~Vvvg~D~R~~s~~~~~~~~~gl~s~G~~V~~~g~~pTP~~ 79 (434)
T cd05802 1 LFGTDGIRGVANE-PLTPELALKLGRAAGKVLGKGGGRPKVLIGKDTRISGYMLESALAAGLTSAGVDVLLLGVIPTPAV 79 (434)
T ss_pred CCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf 9899971003699-999999999999999999846999869999799988799999999999986996999188885999
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r 85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV 164 (448)
Q Consensus 85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l 164 (448)
+|++++++++|||||||||||++||||||++++|.+++++.+++||+++........ ....++......++.+.|++++
T Consensus 80 ~~~v~~~~~~~Gi~ITASHNP~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~-~~~~~~~~~~~~d~~~~Y~~~l 158 (434)
T cd05802 80 AYLTRKLRADAGVVISASHNPFEDNGIKFFSSDGYKLPDEVEEEIEALIDKELELPP-TGEKIGRVYRIDDARGRYIEFL 158 (434)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCEEECCCHHHHHHHHH
T ss_conf 999996499813896368897402848963467875798999999999837876568-6013761688500699999999
Q ss_pred HHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 63263102118966999844665433332221233322222223222355774422101377764200234303675315
Q gi|254780544|r 165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDG 244 (448)
Q Consensus 165 ~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~Dg 244 (448)
++.++.+. .+++||++||+||+++.+++++|++|||+++.+|++||+.++|++|++.+++.|++.|++.++|+|++|||
T Consensus 159 ~~~~~~~~-~~~lkvvvD~~~Ga~~~~~~~il~~lG~~v~~~~~~pdg~~~n~~~~~~~p~~l~~~v~~~~aDlgia~Dg 237 (434)
T cd05802 159 KSTFPKDL-LSGLKIVLDCANGAAYKVAPEVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQKAVLENGADLGIAFDG 237 (434)
T ss_pred HHHCCHHH-HCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 87588144-15988999899861245699999872984477425788776789989899799999998559967888869
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCE
Q ss_conf 52100013322375533113567777655320022343332211360044432001211111233211011111028970
Q gi|254780544|r 245 DGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFN 324 (448)
Q Consensus 245 D~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~ 324 (448)
||||+++||++|++++||++++|++.++++++..++..||.++.||..++++++++|+++++||||||||.++|++.++.
T Consensus 238 D~DR~~~vd~~G~~i~~d~l~~l~a~~~l~~~~~~~~~vv~tv~ss~~l~~~~~~~g~~~~~t~vG~k~i~~~m~~~~~~ 317 (434)
T cd05802 238 DADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGNTVVGTVMSNLGLEKALKELGIKLVRTKVGDRYVLEEMLKHGAN 317 (434)
T ss_pred CCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCE
T ss_conf 98769999899978588999999999999850468987999734427899999976998999437249999999966977
Q ss_pred ECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCC-CHHHHHHHHHHHHHHC
Q ss_conf 013466236530100014442332024667775588889999865642300000005676511-5589999987655430
Q gi|254780544|r 325 VGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSIL-NSSSIVQAIADAESEL 403 (448)
Q Consensus 325 ~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 403 (448)
||||+|||++|++|.+++||++++++++++|+.+++++++|++++|.||+...+++++++... ....+.+.+.+.+..+
T Consensus 318 ~ggE~sG~~~f~~~~~~~Dgi~aal~ile~l~~~~~~ls~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (434)
T cd05802 318 LGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKRSGKSLSELASDMKLYPQVLVNVRVKDKKALLENPRVQAAIAEAEKEL 397 (434)
T ss_pred EEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 97415475774588868989999999999999839999999987544102014604376421120288999999999861
Q ss_pred CCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 7886599967798227999961599899999999999
Q gi|254780544|r 404 RGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLA 440 (448)
Q Consensus 404 ~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~ 440 (448)
++.+|++||||||||++|||+||+|++.+++|+++++
T Consensus 398 ~d~~wvlvRpSgTEP~lriy~Ea~~~~~~~~L~~~ia 434 (434)
T cd05802 398 GGEGRVLVRPSGTEPLIRVMVEGEDEELVEKLAEELA 434 (434)
T ss_pred CCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHC
T ss_conf 7977999981598416899997699999999999759
No 3
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=0 Score=772.99 Aligned_cols=441 Identities=47% Similarity=0.825 Sum_probs=400.5
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 65203358601550687788999999999999999723799838999668779799999999999978987999626780
Q gi|254780544|r 2 KRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPS 81 (448)
Q Consensus 2 ~r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~pt 81 (448)
||++|||+||||+++..+|||+++.++|.|+|++++.+ ..++|+||||+|.+|++|++++++||+++|++|+++|.+||
T Consensus 3 ~~~~FGT~GiRG~ig~~~~t~e~~~~~g~A~~~~l~~~-~~~~VvVg~D~R~ss~~~~~a~~~gL~s~G~~V~~~g~~pT 81 (445)
T PRK10887 3 NRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARH-GSRKIIIGKDTRISGYMLESALEAGLAAAGLSALFTGPMPT 81 (445)
T ss_pred CCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCH
T ss_conf 66775788810575898989999999999999999876-99969999589988899999999999977990998787887
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 89999998719925898865477752012564036545678357899999961566433445433222111354256668
Q gi|254780544|r 82 PAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYI 161 (448)
Q Consensus 82 P~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi 161 (448)
|+++|+++.+++++||||||||||++||||||++++|.+++++.++.|+..+++.... . .....+......+..+.|+
T Consensus 82 P~~~~a~~~~~~~~GImITASHNP~~~NGiK~~~~~G~~~~~~~~~~ie~~~~~~~~~-~-~~~~~~~~~~~~d~~~~yi 159 (445)
T PRK10887 82 PAVAYLTRTFRAEAGIVISASHNPFYDNGIKFFSIDGTKLPDDVEEAIEAEMEKEITC-V-DSAELGKASRIVDAAGRYI 159 (445)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCHHHCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC-C-CHHHCCCCEEECCHHHHHH
T ss_conf 9999999845998589999578961317757744889738688999999987166666-7-6221475101065499999
Q ss_pred HHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 87763263102118966999844665433332221233322222223222355774422101377764200234303675
Q gi|254780544|r 162 EHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIA 241 (448)
Q Consensus 162 ~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia 241 (448)
++++..++..+..+++||++||+||+++.+++++|++|||+++.+|++|||.+++++|.++++..|++.|++.++|+|++
T Consensus 160 ~~~~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~lg~~v~~i~~~pdg~~~~~~~~~~~l~~l~~~v~~~~aDlGia 239 (445)
T PRK10887 160 EFCKGTFPNELSLNELKIVVDCANGATYHIAPNVLRELGATVIAIGCEPNGVNINEEVGATDVRALQARVLAEKADLGIA 239 (445)
T ss_pred HHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 99987464311457998999899887999999999986990999614668888898988758899999998406777999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 31552100013322375533113567777655320022343332211360044432001211111233211011111028
Q gi|254780544|r 242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNN 321 (448)
Q Consensus 242 ~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~ 321 (448)
|||||||++++|++|+++++|++++|++++++++...++ .||.++.||..++++++++|++++||||||+||+++|++.
T Consensus 240 ~DgDaDR~~~vDe~G~~i~~d~il~lla~~~l~~~~~~~-~vV~~~~ss~~~~~~~~~~G~~~~~t~vG~~~I~~~m~e~ 318 (445)
T PRK10887 240 FDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQLRG-GAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEK 318 (445)
T ss_pred ECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCCC-CEEEEECCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHH
T ss_conf 869987589997999788878999999999998489988-5787522651799999966991577784549999999972
Q ss_pred CCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCC--CCHHHHHHHHHHH
Q ss_conf 97001346623653010001444233202466777558888999986564230000000567651--1558999998765
Q gi|254780544|r 322 GFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSI--LNSSSIVQAIADA 399 (448)
Q Consensus 322 ~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~ 399 (448)
++++|||+|||++|++|.+++||+++++++|++++++++++++|.+.++.+|++..++++..... .....+.+...+.
T Consensus 319 ~a~~GgE~SG~~~~~~~~~~~Dgi~a~l~ile~l~~~~~~l~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 398 (445)
T PRK10887 319 GWRIGAENSGHVILLDKTTTGDGIVAGLQVLAAMVRNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVKAVTAEV 398 (445)
T ss_pred CCEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98899768698614345889989999999999999749999999864131162130211035656502218999999999
Q ss_pred HHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 54307886599967798227999961599899999999999998752
Q gi|254780544|r 400 ESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMI 446 (448)
Q Consensus 400 ~~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~i 446 (448)
+..+++.+|+|||||||||++|||+||+|++.++++++++.+.|+.|
T Consensus 399 ~~~~~~~~wvLiR~SgTEP~iRi~~Ea~s~e~~~~l~~~~~~~Ik~i 445 (445)
T PRK10887 399 EAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV 445 (445)
T ss_pred HHHHCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 99717983999973699507999994399999999999999998439
No 4
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=0 Score=735.76 Aligned_cols=428 Identities=23% Similarity=0.387 Sum_probs=385.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV 84 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l 84 (448)
||||+||||++|. +|||++|.++|.|++++++ .+++|+||||+|.+|++|++++++||+++|++|+++|.+|||++
T Consensus 1 iFgt~GiRG~~~~-~lt~e~~~~ig~a~~~~~~---~~~~V~VG~D~R~ss~~l~~a~~~gl~~~G~~V~~~g~~pTP~~ 76 (441)
T cd05805 1 LFGGRGVSGLINV-DITPEFATRLGAAYGSTLP---PGSTVTVSRDASRASRMLKRALISGLLSTGVNVRDLGALPLPVA 76 (441)
T ss_pred CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 9588743355289-9799999999999999827---99989999689855899999999999986994999078771899
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r 85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV 164 (448)
Q Consensus 85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l 164 (448)
+|+++++++++||||||||||++||||||++++|.+++++.+++||+.+..+..... ..++++.....+++.+.|++++
T Consensus 77 ~~a~~~~~~~~GI~ITASHnp~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~-~~~~~g~~~~~~d~~~~Y~~~l 155 (441)
T cd05805 77 RYAIRFLGASGGIHVRTSPDDPDKVEIEFFDSRGLNISRAMERKIENAFFREDFRRA-HVDEIGDITEPPDFVEYYIRGL 155 (441)
T ss_pred HHHHHHCCCCEEEEEECCCCCHHCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC-CHHHCCCEEECCCHHHHHHHHH
T ss_conf 999985599838998447897200435202567886898999999999834322347-8644676366441799999999
Q ss_pred HHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 6326310-211896699984466543333222123332222222322235577-44221013777642002343036753
Q gi|254780544|r 165 KRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ-LDCGSTNVLSLQRKVHEVRADIGIAL 242 (448)
Q Consensus 165 ~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~-~~~~~~~~~~l~~~v~~~~ad~Gia~ 242 (448)
.+.++.. +..+++||++||+||+++.+++++|+++||+++.+|+.||+.++. ++|.++++..+.+.|++.++|+|++|
T Consensus 156 ~~~i~~~~i~~~~~kVvvD~~nGa~~~~~~~il~~lg~~v~~i~~~~d~~~~~~~~~~~~~l~~l~~~v~~~~aDlGia~ 235 (441)
T cd05805 156 LRALDTSGLKKSGLKVVIDYAYGVAGIVLPGLLSRLGCDVVILNARLDEDAPRTDTERQRSLDRLGRIVKALGADFGVII 235 (441)
T ss_pred HHHCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 98649776731597899989997478899999998298279952567899998998660129999999983588768888
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 15521000133223755331135677776553200223433322113600444320012111112332110111110289
Q gi|254780544|r 243 DGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNG 322 (448)
Q Consensus 243 DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~ 322 (448)
||||||++++|++|+++++|++++|++.++++++ ++..||.|+.||.+++++++++|++++||+|||+|+.++|.+ +
T Consensus 236 DgDgDR~~~vD~~G~~i~~d~l~~l~a~~~~~~~--~~~~vv~~v~ss~~~~~i~~~~g~~~~~t~vG~~~i~~~m~~-~ 312 (441)
T cd05805 236 DPNGERLILVDEAGRVISDDLLTALVSLLVLKSE--PGGTVVVPVTAPSVIEQLAERYGGRVIRTKTSPQALMEAALE-N 312 (441)
T ss_pred CCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHC--CCCCEEEEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-C
T ss_conf 6998779999799968687899999999999846--899779987574799999998199669963638999999974-7
Q ss_pred CEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 7001346623653010001444233202466777558888999986564230000000567651155899999876554-
Q gi|254780544|r 323 FNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAES- 401 (448)
Q Consensus 323 ~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 401 (448)
+++|||+|||++|++|.+++||++++++++++++.++++|+++++++|++++...+++|+.. .+.++++.+.+...
T Consensus 313 ~~~gge~sg~~~~~~~~~~~Dgi~~~l~lle~l~~~~~~ls~l~~~l~~~~~~~~~i~~~~~---~k~~~~~~l~~~~~~ 389 (441)
T cd05805 313 VVLAGDGDGGFIFPEFHPGFDAIAALVKILEMLARTNISLSQIVDELPRFYVLHKEVPCPWE---AKGRVMRRLIEEAPD 389 (441)
T ss_pred CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCHH---HHHHHHHHHHHHCCC
T ss_conf 76445666516944778883599999999999997199899999855564155511038788---999999999875723
Q ss_pred ----HCC------CCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf ----307------886599967798227999961599899999999999998
Q gi|254780544|r 402 ----ELR------GIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 (448)
Q Consensus 402 ----~~~------~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i 443 (448)
.+| +.+|++||||||||++|||+||+|++.++++++++.+.|
T Consensus 390 ~~~~~~DGik~~~~~gwiliRpSgTEP~lriy~Ea~~~e~~~~l~~~~~~~i 441 (441)
T cd05805 390 KSIELIDGVKIYEDDGWVLVLPDADEPLCHIYAEGSDQERAEELTEFYVEKV 441 (441)
T ss_pred CCEEECCEEEEECCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 5720112279971988999975188426899995199999999999998359
No 5
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=735.44 Aligned_cols=429 Identities=29% Similarity=0.432 Sum_probs=387.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV 84 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l 84 (448)
+|||+||||++|. +|||+++.++|+|||+++..+..+++|+||||+|.+|++|++++++||+++|++|+++|.+|||++
T Consensus 1 ~f~t~GiRG~~~~-~lt~~~~~~~g~a~~~~l~~~~~~~~VvVg~D~R~~s~~~~~~~a~gl~s~G~~V~~~g~~pTP~~ 79 (445)
T cd05803 1 IISISGIRGIVGE-GLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVIDLGIAPTPTV 79 (445)
T ss_pred CCCCCEECCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf 9873625301899-979999999999999999974899849999699866899999999999977984998898873899
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r 85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV 164 (448)
Q Consensus 85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l 164 (448)
+|++++++++|||||||||||++||||||++++|.++.++++++|+++++....... ..+.++......+..+.|++.+
T Consensus 80 ~~~v~~~~~~~GI~ITASHNP~~~NGiK~~~~~G~~i~~~~~~~I~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~yi~~~ 158 (445)
T cd05803 80 QVLVRQSQASGGIIITASHNPPQWNGLKFIGPDGEFLTPDEGEEVLSCAEAGSAQKA-GYDQLGEVTFSEDAIAEHIDKV 158 (445)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCEECCCCCEECCHHHHHHHHHHHHCCCCCCC-CCCCCCCEEECCCHHHHHHHHH
T ss_conf 999985599858999957888422442203788806788999999999867776666-5023674563441799999999
Q ss_pred HHCCCCH---HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 6326310---21189669998446654333322212333222222232223557-7442210137776420023430367
Q gi|254780544|r 165 KRTLPRD---VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGINI-NLDCGSTNVLSLQRKVHEVRADIGI 240 (448)
Q Consensus 165 ~~~~~~~---~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~-~~~~~~~~~~~l~~~v~~~~ad~Gi 240 (448)
.+.+..+ +..+++|||+||+||+++.+++++|++|||+++.+|++||+.|| +|+|.++++..+.+.+++.++|+|+
T Consensus 159 ~~~~~~~~~~~~~~~~kIvvd~~~G~~~~~~~~il~~lG~~vi~~~~~pdg~Fp~~p~p~~e~l~~l~~~v~~~~adlgi 238 (445)
T cd05803 159 LALVDVDVIKIRERNFKVAVDSVNGAGGLLIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQLCAAVKESGADVGF 238 (445)
T ss_pred HHCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 83066333442348988999899887999999999973980798055589988789978889999999999856986799
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 53155210001332237553311356777765532002234333221136004443200121111123321101111102
Q gi|254780544|r 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN 320 (448)
Q Consensus 241 a~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~ 320 (448)
+|||||||++++|++|+++++|++++|+++++++....+ ..||.|++||.+++++++++|++++||+|||||+.+.|++
T Consensus 239 a~DgDaDR~~ivd~~G~~~~~d~~~~l~~~~l~~~~~~~-~~vv~t~~ss~~~~~ia~~~g~~~~~t~vG~k~i~~~m~~ 317 (445)
T cd05803 239 AVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGGRK-GPVVVNLSTSRALEDIARKHGVPVFRSAVGEANVVEKMKE 317 (445)
T ss_pred EECCCCCEEEEECCCCCEECCHHHHHHHHHHHHHHCCCC-CCEEECHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 987988768999799967781399999999999638888-8446337887579999998407669984444999999996
Q ss_pred CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 89700134662365301000144423320246677755888899998656423000000056765115589999987655
Q gi|254780544|r 321 NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAE 400 (448)
Q Consensus 321 ~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 400 (448)
.++++|||+|||++|+++.+++||++++++++++++.++++|++|.+.+|+|+....++.|++.. ...+++.+.+..
T Consensus 318 ~~~~~ggE~sgg~~~~~~~~~~Dgi~~~~~ile~la~~~~~l~~l~~~~p~~~~~~~~~~~~~~~---~~~i~~~l~~~~ 394 (445)
T cd05803 318 VDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAASGKPLSEIVDELPQYYISKTKVTIAGEA---LERLLKKLEAYF 394 (445)
T ss_pred CCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCHHH---HHHHHHHHHHHH
T ss_conf 69878871658786256431888899999999999984999999998614432211244156201---999999998751
Q ss_pred -----HHCCC------CCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
Q ss_conf -----43078------8659996779822799996159989999999999
Q gi|254780544|r 401 -----SELRG------IDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDL 439 (448)
Q Consensus 401 -----~~~~~------~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~ 439 (448)
..+|| .+|++||||||||++|||+||+|++.+++|++++
T Consensus 395 ~~~~~~~~DGik~~~~dgwiliRpSgTEP~iriy~Ea~~~e~a~~l~~~~ 444 (445)
T cd05803 395 KDAEASTLDGLRLDSEDSWVHVRPSNTEPIVRIIAEAPTQDEAEALADRF 444 (445)
T ss_pred HCCCCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf 01563014638997598899998119811689999759999999998754
No 6
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=0 Score=732.85 Aligned_cols=430 Identities=30% Similarity=0.425 Sum_probs=380.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE-CCCCHHH
Q ss_conf 3358601550687788999999999999999723-7998389996687797999999999999789879996-2678089
Q gi|254780544|r 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGK-KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL-GPIPSPA 83 (448)
Q Consensus 6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~-~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~-g~~ptP~ 83 (448)
|||+||||++|+ +|||+++.++|+|||+++++. ..+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+
T Consensus 3 FGT~GiRG~~~~-~lt~~~v~~ig~a~~~~l~~~~~~~~~Vvvg~D~R~ss~~~~~a~~~gl~s~G~~V~~~~g~~pTP~ 81 (461)
T cd05800 3 FGTDGWRGIIAE-DFTFENVRRVAQAIADYLKEEGGGGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLSDRPVPTPA 81 (461)
T ss_pred CCCCCCCEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
T ss_conf 389973214799-9899999999999999999747999979999789825899999999999977997998899887599
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999871992589886547775201256403654567835789999996156643344543322211135425666887
Q gi|254780544|r 84 VAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEH 163 (448)
Q Consensus 84 l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~ 163 (448)
++|++++++++|||||||||||++||||||++++|.++.++.+++||+.++........ ....+.....+ +.+.|+++
T Consensus 82 ~~~~~~~~~a~~GImITASHNP~~~NGiK~~~~~G~~~~~~~~~~ie~~~~~~~~~~~~-~~~~~~~~~~d-~~~~Y~~~ 159 (461)
T cd05800 82 VSWAVKKLGAAGGVMITASHNPPEYNGVKVKPAFGGSALPEITAAIEARLASGEPPGLE-ARAEGLIETID-PKPDYLEA 159 (461)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEC-CHHHHHHH
T ss_conf 99999964998699998378986454299978999838999999999997167755554-35798379817-58999999
Q ss_pred HHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 76326310-211896699984466543333222123332222222322235577--442210137776420023430367
Q gi|254780544|r 164 VKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ--LDCGSTNVLSLQRKVHEVRADIGI 240 (448)
Q Consensus 164 l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~--~~~~~~~~~~l~~~v~~~~ad~Gi 240 (448)
+++.++.+ ++.+++|||+||+||+++.+++++|+.+||+++.+|+.||+.|++ |+|.++++..|.+.+++.++|+|+
T Consensus 160 l~~~i~~~~i~~~~lkIvid~~~G~~~~~~~~ll~~lg~~v~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~adlgi 239 (461)
T cd05800 160 LRSLVDLEAIREAGLKVVVDPMYGAGAGYLEELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLGELAEAVKEGGADLGL 239 (461)
T ss_pred HHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 98754955551269779998899656655899998609749997771479999879998768999999999833988346
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 53155210001332237553311356777765532002234333221136004443200121111123321101111102
Q gi|254780544|r 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN 320 (448)
Q Consensus 241 a~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~ 320 (448)
+|||||||++++|++|++++||++++|+++++++++..++ .||.|++||.+++++++++|++++||+|||||+.++|++
T Consensus 240 a~DgDaDR~~~vd~~G~~i~gd~l~alla~~l~~~~~~~~-~vv~tv~ss~~i~~i~~~~g~~~~rt~vG~k~i~~~m~~ 318 (461)
T cd05800 240 ATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLRG-PVVKTVSTTHLIDRIAEKHGLPVYETPVGFKYIAEKMLE 318 (461)
T ss_pred EECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCCC-CEEEEECCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 7649976799995899579898999999999997078888-736861583799999997798899964873899988764
Q ss_pred CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH-C---CCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 897001346623653010001444233202466777558888999986564-2---300000005676511558999998
Q gi|254780544|r 321 NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE-Y---PQFLRSVSVKDTSILNSSSIVQAI 396 (448)
Q Consensus 321 ~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~-~---~~~~~~~~~~~~~~~~~~~i~~~~ 396 (448)
.+++||||+|||++|++|.+++||+++++++|+++++++++++++++.+++ | +....++.++ +.++..+++.+
T Consensus 319 ~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~~le~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~k~~~~~~l 395 (461)
T cd05800 319 EDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVAELEEEYGPSYYDRIDLRLT---PAQKEAILEKL 395 (461)
T ss_pred HCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECC---HHHHHHHHHHH
T ss_conf 201357445587612676879988999999999999849999999999899748775225642169---89999999998
Q ss_pred HHHHH------------HCC-------CCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 76554------------307-------88659996779822799996159989999999999999
Q gi|254780544|r 397 ADAES------------ELR-------GIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKV 442 (448)
Q Consensus 397 ~~~~~------------~~~-------~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~ 442 (448)
.+... .+| +.+|++||||||||++|||+||+|++.+++++++++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~iDGlk~~~~dg~w~lvRpSgTEP~iriy~Ea~~~e~~~~ll~e~~~l 460 (461)
T cd05800 396 KNEPPLSIAGGKVDEVNTIDGVKLVLEDGSWLLIRPSGTEPLLRIYAEAPSPEKVEALLDAGKKL 460 (461)
T ss_pred HHCCCHHHCCCCCEEEEECCCEEEEECCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 71442233477511688136379994698399998649801699999979999999999999855
No 7
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=724.71 Aligned_cols=424 Identities=35% Similarity=0.592 Sum_probs=385.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV 84 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l 84 (448)
||||+||||++|. +|||++|.++|+|+|++++ .++|+||||+|++|++|++++++||+++|++|+++|.+|||++
T Consensus 1 iFGt~GiRG~~~~-~~t~~~~~~l~~a~~~~~~----~~~vvIg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~pTP~~ 75 (439)
T cd03087 1 LFGTSGIRGVVGE-ELTPELALKVGKALGTYLG----GGTVVVGRDTRTSGPMLKNAVIAGLLSAGCDVIDIGIVPTPAL 75 (439)
T ss_pred CCCCCCCEEECCC-CCCHHHHHHHHHHHHHHCC----CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf 9488851003799-9899999999999998808----9859999589845899999999999977996999588883999
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r 85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV 164 (448)
Q Consensus 85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l 164 (448)
+|++++++ ++||||||||||++||||||++++|.+++++.+++||+++....+++ ..+++++.....+++.+.|++.+
T Consensus 76 ~~~v~~~~-~~Gi~ITASHNP~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~-~~~~~~g~~~~~~~~~~~Y~~~l 153 (439)
T cd03087 76 QYAVRKLG-DAGVMITASHNPPEYNGIKLVNPDGTEFSREQEEEIEEIIFSERFRR-VAWDEVGSVRREDSAIDEYIEAI 153 (439)
T ss_pred HHHHHHHC-CCEEEEEECCCCHHHCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC-CCHHHCCCEEECCHHHHHHHHHH
T ss_conf 99999718-81699994589711180898568885679999999999984699876-78644583586412799999999
Q ss_pred HHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 6326310211896699984466543333222123332222222322235577--44221013777642002343036753
Q gi|254780544|r 165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ--LDCGSTNVLSLQRKVHEVRADIGIAL 242 (448)
Q Consensus 165 ~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~--~~~~~~~~~~l~~~v~~~~ad~Gia~ 242 (448)
++.++... .+++||++||+||+++.+++++|+++||+++.+|+.||+.||+ |+|.++++..+++.+++.++|+|+++
T Consensus 154 ~~~i~~~~-~~~~kvvvD~~~G~~~~~~~~ll~~lg~~v~~~~~~~d~~fp~~~p~p~~~~l~~~~~~v~~~~ad~gia~ 232 (439)
T cd03087 154 LDKVDIDG-GKGLKVVVDCGNGAGSLTTPYLLRELGCKVITLNANPDGFFPGRPPEPTPENLSELMELVRATGADLGIAH 232 (439)
T ss_pred HHHCCHHH-CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 86458233-27988999899870788999999981996799842208976887998768899999999984399879997
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 15521000133223755331135677776553200223433322113600444320012111112332110111110289
Q gi|254780544|r 243 DGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNG 322 (448)
Q Consensus 243 DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~ 322 (448)
||||||++++|++|++++||++++|++++++++. .+.||.|++||..++++++++|+++++|+||+||+.++|++.+
T Consensus 233 DgD~DR~~~vd~~G~~i~gd~i~~Lla~~ll~~~---~~~vv~~v~ts~~~~~ia~~~g~~~~~t~~G~k~i~~~~~~~~ 309 (439)
T cd03087 233 DGDADRAVFVDEKGRFIDGDKLLALLAKYLLEEG---GGKVVTPVDASMLVEDVVEEAGGEVIRTPVGDVHVAEEMIENG 309 (439)
T ss_pred CCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHC
T ss_conf 5987478998589759889999999999999768---9989994632789999999819863011567499999998508
Q ss_pred CEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH--
Q ss_conf 700134662365301000144423320246677755888899998656423000000056765115589999987655--
Q gi|254780544|r 323 FNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAE-- 400 (448)
Q Consensus 323 ~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 400 (448)
+.||||+|||++|++|.+++||+++++++++++++. ++|+++++.+|+|+....++++++ ..+..+++.+.+..
T Consensus 310 ~~~g~E~sg~~~f~~~~~~~Dgi~a~~~~lel~~~~-~~Ls~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~~~~ 385 (439)
T cd03087 310 AVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAEE-KPLSELLDELPKYPLLREKVECPD---EKKEEVMEAVEEELSD 385 (439)
T ss_pred CEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHCEEEEEEECCH---HHHHHHHHHHHHHHHH
T ss_conf 259983667886268677886999999999999838-999999987476462237898677---7699999999986231
Q ss_pred --HH---CCC------CCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf --43---078------86599967798227999961599899999999999998
Q gi|254780544|r 401 --SE---LRG------IDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 (448)
Q Consensus 401 --~~---~~~------~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i 443 (448)
.+ +|| .+|++||||||||++|||+||+|++.+++++++++++|
T Consensus 386 ~~~~~~~iDGik~~~~dgw~liRpSgTEp~iriy~Ea~~~e~a~~l~~e~~~~i 439 (439)
T cd03087 386 ADEDVDTIDGVRIEYEDGWVLIRPSGTEPKIRITAEAKTEERAKELLEEGRSKV 439 (439)
T ss_pred CCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 226623565089983898999981198126899998499999999999999659
No 8
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=0 Score=717.83 Aligned_cols=425 Identities=32% Similarity=0.466 Sum_probs=372.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV 84 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l 84 (448)
|||++||||++|+ +|||+++.++|+|||++++.+ .+++|+||||+|++|++|++++++||+++|++|+++|.+|||++
T Consensus 1 iF~~~~IRG~~~~-~~t~e~~~~l~~A~a~~l~~~-~~~~Vvig~DtR~ss~~~~~a~~~gl~s~G~~V~~~g~~pTP~~ 78 (443)
T cd03089 1 IFRAYDIRGIAGE-ELTEEIAYAIGRAFGSWLLEK-GAKKVVVGRDGRLSSPELAAALIEGLLAAGCDVIDIGLVPTPVL 78 (443)
T ss_pred CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf 9887764236799-969999999999999999874-99979999699967899999999999977996999798874999
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r 85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV 164 (448)
Q Consensus 85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l 164 (448)
+|+++++++++||||||||||++|||+||++++| ++.++..++|++.+++..... ....+..... ++.+.|++++
T Consensus 79 ~~~v~~~~~~~GI~ITASHNP~e~NGiK~~~~~g-~~~~~~i~~i~~~~~~~~~~~---~~~~g~~~~~-d~~~~Y~~~l 153 (443)
T cd03089 79 YFATFHLDADGGVMITASHNPPEYNGFKIVIGGG-PLSGEDIQALRERAEKGDFAA---ATGRGSVEKV-DILPDYIDRL 153 (443)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCCCCC---CCCCCEEEEC-CHHHHHHHHH
T ss_conf 9999852897589997168987667579988999-969899999999985678655---5789818975-6499999999
Q ss_pred HHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCCCCCCEEEE
Q ss_conf 632631021189669998446654333322212333222222232223557744221---01377764200234303675
Q gi|254780544|r 165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS---TNVLSLQRKVHEVRADIGIA 241 (448)
Q Consensus 165 ~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~---~~~~~l~~~v~~~~ad~Gia 241 (448)
.+.++. ..+++||++||+||+++.+++++|++|||+++.+|+.||+.||+..|+| .++..+.+.+++.++|+|++
T Consensus 154 ~~~i~~--~~~~~kivvD~~~Ga~~~~~~~il~~lG~~v~~i~~~~Dg~f~~~~p~p~~~~~l~~l~~~v~~~~adlGia 231 (443)
T cd03089 154 LSDIKL--GKRPLKVVVDAGNGAAGPIAPQLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLEDLIAAVKENGADLGIA 231 (443)
T ss_pred HHHCCC--CCCCCEEEEECCCCCCHHEHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 875474--557868999889985313438789875993643366657888988989886678999999986404426788
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 31552100013322375533113567777655320022343332211360044432001211111233211011111028
Q gi|254780544|r 242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNN 321 (448)
Q Consensus 242 ~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~ 321 (448)
|||||||++++|++|++++||++++|+++++++++ ++..||.++.||..++++++++|+++++|+||||||.+.|++.
T Consensus 232 ~DgDgDR~~~vd~~G~~l~~d~i~~ll~~~~l~~~--~~~~vV~~~~ss~~l~~~~~~~g~~~~~t~vG~k~i~~~m~~~ 309 (443)
T cd03089 232 FDGDGDRLGVVDEKGEIIWGDRLLALFARDILKRN--PGATIVYDVKCSRNLYDFIEEAGGKPIMWKTGHSFIKAKMKET 309 (443)
T ss_pred ECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 75998779999799858189999999999999858--9995112543127799999984894760277879999999851
Q ss_pred CCEECCCCCCEEEEEC-CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEE-EEEECCCCCCCCHHHHHHHHHH-
Q ss_conf 9700134662365301-000144423320246677755888899998656423000-0000567651155899999876-
Q gi|254780544|r 322 GFNVGGEQSGHIILSD-YGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFL-RSVSVKDTSILNSSSIVQAIAD- 398 (448)
Q Consensus 322 ~~~~g~E~sg~~~~~~-~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~- 398 (448)
++.+|||+|||++|++ |...+||+++++++|++++.++++++++++.+|+|++.. .++.|++ .++..+++.+.+
T Consensus 310 ~~~~ggE~SGh~~~~e~~~~~~Dgi~a~l~ile~l~~~~~~l~~i~~~lp~~~~~~~i~~~~~~---~~k~~~~~~l~~~ 386 (443)
T cd03089 310 GALLAGEMSGHIFFKDRWYGFDDGIYAALRLLELLSKSGKTLSELLADLPKYFSTPEIRIPVTE---EDKFAVIERLKEH 386 (443)
T ss_pred CCEEEEEEECEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCH---HHHHHHHHHHHHH
T ss_conf 5079987313188646567787299999999999997399999999860550587557430783---7699999999997
Q ss_pred ---HHHH---CCC------CCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf ---5543---078------86599967798227999961599899999999999998
Q gi|254780544|r 399 ---AESE---LRG------IDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 (448)
Q Consensus 399 ---~~~~---~~~------~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i 443 (448)
...+ +|| .+|++||||||||++|||+||+|++.+++|+++++++|
T Consensus 387 ~~~~~~~~~~~DGik~~~~dgwvliRpSgTEP~lriy~Ea~~~e~ae~l~~~~~~~i 443 (443)
T cd03089 387 FEFPGAEIIDIDGVRVDFEDGWGLVRASNTEPVLVLRFEADTEEGLEEIKAELRKLL 443 (443)
T ss_pred HHHCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 651225611456379974998999984298637899996599999999999999559
No 9
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=711.46 Aligned_cols=441 Identities=44% Similarity=0.718 Sum_probs=385.4
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 65203358601550687788999999999999999723799838999668779799999999999978987999626780
Q gi|254780544|r 2 KRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPS 81 (448)
Q Consensus 2 ~r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~pt 81 (448)
.+.+|||+||||+++. +|||+++.++|+|+|++++. ...++|+||||+|.+|++|++++++||+++|++|+++|.+||
T Consensus 6 ~~~~FGT~GiRG~~~~-~lt~~~~~~~g~a~~~~l~~-~~~~~VvVG~D~R~ss~~~~~a~~~gl~~~G~~v~~~g~~pT 83 (464)
T COG1109 6 KKLLFGTDGIRGVAGE-ELTPEFALKLGRALGSVLRK-KGAPKVVVGRDTRLSSEMLAAALAAGLTSAGIDVYDLGLVPT 83 (464)
T ss_pred CCCEECCCCEEEECCC-CCCHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 4651678763220056-67999999999999998402-589749999279878099999999999988986999588784
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 89999998719925898865477752012564036545678357899999961566-43344543322211135425666
Q gi|254780544|r 82 PAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDL-TSYLSCYDSIGHAKRVDGVHDRY 160 (448)
Q Consensus 82 P~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y 160 (448)
|+++|+++++++++||||||||||++||||||++++|.+++++.+++|+..+.... ... ..+...|.+...+...+.|
T Consensus 84 P~v~f~~~~~~~~~gimITASHNP~~yNGiK~~~~~G~~i~~~~e~~Ie~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~Y 162 (464)
T COG1109 84 PAVAFATRKLGADAGVMITASHNPPEYNGIKFFGSDGGKISDDIEEEIEAILAEEVDLPR-PSWGELGRLKRIPDALDRY 162 (464)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCCEECHHHHHHH
T ss_conf 899999986499736999568999334769998699868988999999998715544555-5412367401126689999
Q ss_pred HHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHCCCCCCE
Q ss_conf 8877632631021189669998446654333322212333222222232223557--74422101377764200234303
Q gi|254780544|r 161 IEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGINI--NLDCGSTNVLSLQRKVHEVRADI 238 (448)
Q Consensus 161 i~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~--~~~~~~~~~~~l~~~v~~~~ad~ 238 (448)
++++++.++.+...+++|||+||+||+++.+++++|++|||+++.+++.||+.|| +|+|.++++..|++.+++.++|+
T Consensus 163 ~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~~~v~~~~aDl 242 (464)
T COG1109 163 IEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELGAEVVSINCDPDGLFPNINPNPGETELLDLAKAVKEHGADL 242 (464)
T ss_pred HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 99999864542244687799978987236779999997698699854636886788898998403999999997179978
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 67531552100013322375533113567777655320022343332211360044432001211111233211011111
Q gi|254780544|r 239 GIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYM 318 (448)
Q Consensus 239 Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~ 318 (448)
|++|||||||++++|++|++++||++++|++.|++++...+ .||.|+.||.+++.+++.+|++++||+|||+||.++|
T Consensus 243 gia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~ll~~~~~~--~vV~tv~ss~~~~~i~~~~g~~~~~t~vG~k~i~~~~ 320 (464)
T COG1109 243 GIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEKGKLP--TVVTTVMSSLALEKIAKKLGGKVVRTKVGDKYIAEKM 320 (464)
T ss_pred EEEECCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 99976998669999589978772799999999999657887--4999524757899999984991899556669999999
Q ss_pred HCCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHH-HHHCCC-EEEEEECCCCCCC-CHHHHHHH
Q ss_conf 02897001346623653010001444233202466777558888999986-564230-0000005676511-55899999
Q gi|254780544|r 319 KNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHC-FEEYPQ-FLRSVSVKDTSIL-NSSSIVQA 395 (448)
Q Consensus 319 ~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~-l~~~~~-~~~~~~~~~~~~~-~~~~i~~~ 395 (448)
++.+++||||+|||++|++|.+++||+++++++++++++.+++++++... ++.+++ ...++++.+.... .....++.
T Consensus 321 ~~~~~~~ggE~sg~~~~~~~~~~~Dgi~aal~ilel~~~~~~~lsel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (464)
T COG1109 321 RENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGKSLSELLAELLPKYPQSVEINVRVTDEGKAEVLEKLLEE 400 (464)
T ss_pred HHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 85497786147563886788899519999999999999858987799997644422663577875574204689999985
Q ss_pred HHH--HHHHCCC------CCEE-EEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 876--5543078------8659-99677982279999615998999999999999987520
Q gi|254780544|r 396 IAD--AESELRG------IDRL-IVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMID 447 (448)
Q Consensus 396 ~~~--~~~~~~~------~~w~-liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~i~ 447 (448)
... ....+++ .+|+ +||||||||++|||+|+.+.+.++++.+++.++|+...
T Consensus 401 ~~~~~~~~~idgv~~~~~~g~~~lvRpSGTEP~lrvy~Ea~~~~~~~~~~~~~~~~v~~~~ 461 (464)
T COG1109 401 LREAKKVDTIDGVKVELEDGGRVLVRPSGTEPLIRVYVEAKDEELAEELAEEIAELVREAL 461 (464)
T ss_pred CCCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 6233403003339999079958999837998089999983898999999999999998754
No 10
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=0 Score=701.96 Aligned_cols=428 Identities=27% Similarity=0.412 Sum_probs=364.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf 33586015506877889999999999999997237998389996687797999999999999789879996267808999
Q gi|254780544|r 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVA 85 (448)
Q Consensus 6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~ 85 (448)
|..+||||++|. +|||+++.++|+|||++++.. .+++|+||||+|.+|++|++++++||+++|++|+++|.+|||+++
T Consensus 1 f~~ydIRGi~~~-~lt~e~~~~~g~A~~~~l~~~-~~~~Vvvg~D~R~ss~~~~~~~a~gl~~~Gi~V~~~g~~pTP~l~ 78 (445)
T PRK09542 1 IKAYDVRGLVGE-ELDEDFVRDVGAAFARLMRAE-GATQVVIGHDMRDSSPELAAAFAEGVTAQGLDVVRIGLASTDQLY 78 (445)
T ss_pred CCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH
T ss_conf 977442210599-809999999999999998766-998799997998568999999999999879909989989878999
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99987199258988654777520125640365456783578-99999961566433445433222111354256668877
Q gi|254780544|r 86 MLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIE-DRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV 164 (448)
Q Consensus 86 ~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~-~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l 164 (448)
|++++++++ |+||||||||++||||||+.++|.++..+.. .++++.+...... .....+.+.. .++.+.|++++
T Consensus 79 ~~~~~~~~~-GimITASHNP~~~NGiK~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~i~~-~d~~~~Y~~~l 153 (445)
T PRK09542 79 FASGLLDCP-GAMFTASHNPAAYNGIKLCRAGAKPVGQDTGLAAIRDDLIAGVPA---YDGPPGTVTE-RDVLADYAAFL 153 (445)
T ss_pred HHHCCCCCC-EEEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC---CCCCCCEEEE-CCHHHHHHHHH
T ss_conf 985115887-699966889876775997679998688207999999998669965---4568970452-34599999999
Q ss_pred HHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCCCCCCEEEE
Q ss_conf 632631021189669998446654333322212333222222232223557744221---01377764200234303675
Q gi|254780544|r 165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS---TNVLSLQRKVHEVRADIGIA 241 (448)
Q Consensus 165 ~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~---~~~~~l~~~v~~~~ad~Gia 241 (448)
.+.++... .+++|||+||+||+++.+++.+|+.|||+++.+|++||+.||+.+|+| +++..|++.|++.++|+|++
T Consensus 154 ~~~vd~~~-~~~lkIvvD~~~Ga~~~~~~~il~~lg~~v~~l~~~~dg~fp~~~p~P~~~~~l~~l~~~v~~~~adlGia 232 (445)
T PRK09542 154 RSLVDLSG-IRPLKVAVDAGNGMGGHTVPAVLGGLPITLLPLYFELDGTFPNHEANPLDPANLVDLQAFVRETGADIGLA 232 (445)
T ss_pred HHHCCHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 86579121-47887999888847889999987346975524566789999998989899999999999998649987401
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 31552100013322375533113567777655320022343332211360044432001211111233211011111028
Q gi|254780544|r 242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNN 321 (448)
Q Consensus 242 ~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~ 321 (448)
|||||||++++|++|+++++|++++|+++++++++ ++..||.++.||..++++++++|++++||+||||||.++|.+.
T Consensus 233 ~DgD~DR~~~vd~~G~~i~~d~~~al~~~~~l~~~--~~~~vv~~v~ts~~~~~~~~~~g~~~~~t~vG~k~i~~~m~~~ 310 (445)
T PRK09542 233 FDGDADRCFVVDERGQPVSPSAVTALVAARELARE--PGATIIHNLITSRAVPELVAERGGTPVRTRVGHSFIKALMAET 310 (445)
T ss_pred ECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHC--CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHC
T ss_conf 56998758999899968578899999999998636--6877234420667899999975998999378479999999864
Q ss_pred CCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEE-EEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 97001346623653010001444233202466777558888999986564230000-00056765115589999987655
Q gi|254780544|r 322 GFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLR-SVSVKDTSILNSSSIVQAIADAE 400 (448)
Q Consensus 322 ~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 400 (448)
+++||||+|||++|++|.+++||+++++++|++++.+++++++|++.+++|+.... +.+..+.. .....+++.+.+..
T Consensus 311 ~~~~GgE~Sg~~~~~~~~~~~Dgi~aal~~l~~l~~~~~~lsel~~~~~~y~~~~~i~~~~~~~~-~~~~~~~~~~~~~~ 389 (445)
T PRK09542 311 GAIFGGEHSAHYYFRDFWGADSGMLAALHVLAALGEQDRPLSELMADYQRYAASGEINSTVADAP-ARMEAVLKAFGGRI 389 (445)
T ss_pred CCEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCHH-HHHHHHHHHHHHCC
T ss_conf 93899968456875687889859999999999999759978999875400367644544248989-99999998734012
Q ss_pred HH----------CCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 43----------078865999677982279999615998999999999999987
Q gi|254780544|r 401 SE----------LRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIP 444 (448)
Q Consensus 401 ~~----------~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~ 444 (448)
.+ +.+.+|++||||||||++|||+||+|++.++++++++.++|+
T Consensus 390 ~~i~~~DGvki~~~d~~wvlvRpSgTEP~iRi~~Ea~~~e~~~~l~~~~~~~vk 443 (445)
T PRK09542 390 VSVDHLDGVTVDLGDGSWFNLRASNTEPLLRLNVEARTEEEVDAVVDEVLAIIR 443 (445)
T ss_pred CCEECCCCEEEEECCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 454403638999479838999224990059999972999999999999999973
No 11
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=0 Score=696.78 Aligned_cols=438 Identities=24% Similarity=0.315 Sum_probs=353.6
Q ss_pred CCCCCEEEEECC--CCCCHHHHHHHHHHHHHHHHHCC---CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE-CCC
Q ss_conf 335860155068--77889999999999999997237---998389996687797999999999999789879996-267
Q gi|254780544|r 6 FGTDGIRGKSNT--FPITPNFMMRIGIAVGYLFRGKK---KHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL-GPI 79 (448)
Q Consensus 6 FGt~GiRG~~~~--~~~t~~~v~~i~~a~~~~~~~~~---~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~-g~~ 79 (448)
|||+||||+++. ..+|++++.++++|++.|+++.. .+++|+||||+|++|++|+++++++|+++|++|+++ |.+
T Consensus 4 FGT~GiRG~vg~~~~~~n~~~v~~~~~a~~~~l~~~~~~~~~~~VvVG~DtR~ss~~~a~~~a~~l~~~G~~V~~~~g~~ 83 (487)
T cd05799 4 FGTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAANGIKVYLFDDLR 83 (487)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 55885252368998868899999999999999998567678986999978986789999999999997799799889978
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCCCCCCC-CC
Q ss_conf 8089999998719925898865477752012564036545678357899999961566433445---4332221113-54
Q gi|254780544|r 80 PSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSC---YDSIGHAKRV-DG 155 (448)
Q Consensus 80 ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~---~~~~~~~~~~-~~ 155 (448)
|||+++|++++++++|||||||||||++||||||++++|.++.++.+++|++.+++........ ....+..+.. ++
T Consensus 84 PTP~~~~~~~~~~a~~GImITASHNP~~~NGiK~~~~~G~~l~~~~~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (487)
T cd05799 84 PTPLLSFAVRHLGADAGIMITASHNPKEYNGYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIKFEEALDSGLIKYIGEE 163 (487)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHH
T ss_conf 85799999996199857999348997522777987799984786688999999984335211553100247852776487
Q ss_pred HHHHHHHHHHHCCC-CH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCC-CCCCCCH---HHH
Q ss_conf 25666887763263-10-21189669998446654333322212333222222---2322235577-4422101---377
Q gi|254780544|r 156 VHDRYIEHVKRTLP-RD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVI---GDKPNGININ-LDCGSTN---VLS 226 (448)
Q Consensus 156 ~~~~Yi~~l~~~~~-~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i---~~~pd~~~~~-~~~~~~~---~~~ 226 (448)
+.+.|++++++.+. .. ...+++||++||+||+++.+++++|++|||+++.+ ++.|||.||+ +.|+|+. +..
T Consensus 164 ~~~~Y~~~l~~~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~lG~~~v~~v~~~~~pDg~Fp~~~~pnPe~~~~l~~ 243 (487)
T cd05799 164 IDDAYLEAVKKLLVNPELNEGKDLKIVYTPLHGVGGKFVPRALKEAGFTNVIVVEEQAEPDPDFPTVKFPNPEEPGALDL 243 (487)
T ss_pred HHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 89999999987568844640389779995798738999999999769972699333434799989999989652567999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCC--CCCC--CCCCCCHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHHH
Q ss_conf 76420023430367531552100013--3223--75533113567777655320022-----343332211360044432
Q gi|254780544|r 227 LQRKVHEVRADIGIALDGDGDRVIIV--DEKG--AIVNGDQIMALIAREWMSHSLLR-----GNGIVTTVMSNIGLERFI 297 (448)
Q Consensus 227 l~~~v~~~~ad~Gia~DgD~DR~~iv--d~~G--~~i~~d~~~~lla~~ll~~~~~~-----~~~vv~~v~ss~~i~~~a 297 (448)
+.+.+++.++|+|++|||||||++++ |++| ++++||++++|+++|+++..+.+ +..||.|+.||.++++++
T Consensus 244 ~~~~v~~~~aD~Gia~DGDaDR~~vv~~d~~g~~~~i~GD~i~al~a~~ll~~~~~~~~~~~~~~vv~t~~ss~~~~~ia 323 (487)
T cd05799 244 AIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGKLPKNPVIVKTIVSSELLRKIA 323 (487)
T ss_pred HHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHH
T ss_conf 99999852898899977888746899985899779706589999999999999887166789977999840627999999
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHC-----CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHH---HCCCCHHHHHHHH
Q ss_conf 00121111123321101111102-----897001346623653010001444233202466777---5588889999865
Q gi|254780544|r 298 AGLGLSLKRTEVGDRYIMEYMKN-----NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIK---QYDKPVSTICHCF 369 (448)
Q Consensus 298 ~~~g~~v~~t~vG~k~i~~~~~~-----~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~---~~~~~l~~l~~~l 369 (448)
+++|++++||+|||||+.+.|.+ .+++||||+|||+++++|.+++||++++++++++++ .++++++++++++
T Consensus 324 ~~~g~~~~~t~VG~k~v~~~m~~~~~~~~~~~~ggEeS~G~~~~~~~~~~Dgi~aal~~lei~~~~~~~~~~l~e~l~~i 403 (487)
T cd05799 324 KKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKAQGKTLLDRLDEL 403 (487)
T ss_pred HHCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 98799799927870999999998655587537886110474557865578679999999999999987599899999999
Q ss_pred -HHCC---CEEEEEECCCCCC-CCHHHHHHHHHHHH----HHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf -6423---0000000567651-15589999987655----4307886599967798227999961599899999999999
Q gi|254780544|r 370 -EEYP---QFLRSVSVKDTSI-LNSSSIVQAIADAE----SELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLA 440 (448)
Q Consensus 370 -~~~~---~~~~~~~~~~~~~-~~~~~i~~~~~~~~----~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~ 440 (448)
++|+ +...++.+++... .....+++.+.+.. ..+++.+|++||||||||++|||+||.|++.++++.+++.
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~~~~~~dg~w~lvR~SGTEP~iRvy~Ea~~~~~~e~~~~~~~ 483 (487)
T cd05799 404 YEKYGYYKEKTISITFEGKEGPEKIKAIMDRLRNNPNVLTFYLEDGSRVTVRPSGTEPKIKFYIEVVGKKTLEEAEKKLD 483 (487)
T ss_pred HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCHHHEEEEEEECCHHHHHHHHHHHH
T ss_conf 99828775405889836867699999999998635785999978984999976388423379997689999999999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780544|r 441 KVI 443 (448)
Q Consensus 441 ~~i 443 (448)
++.
T Consensus 484 ~~~ 486 (487)
T cd05799 484 ALK 486 (487)
T ss_pred HHH
T ss_conf 853
No 12
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=690.24 Aligned_cols=439 Identities=22% Similarity=0.326 Sum_probs=352.6
Q ss_pred CCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CC
Q ss_conf 520-33586015506877889999999999999997237998389996687797999999999999789879996---26
Q gi|254780544|r 3 RRF-FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL---GP 78 (448)
Q Consensus 3 r~l-FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~---g~ 78 (448)
++| |||+||||.++..+||.+++.++++|+|.|++.++..++|+||||+|++|+.++..++++|+++|++|+.+ |.
T Consensus 19 ~ri~FGT~G~RG~~g~~~~n~~~v~~~~~al~~~~~~~~~~~~vvIG~D~R~~S~~~a~~aa~vl~a~Gi~V~l~~~~~~ 98 (522)
T cd05801 19 QRVAFGTSGHRGSSLKGSFNEAHILAISQAICDYRKSQGITGPLFLGKDTHALSEPAFISALEVLAANGVEVIIQQNDGY 98 (522)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 57665685126776899988999999999999999972999878999689867699999999999978987999379984
Q ss_pred CCHHHHHHHH------HHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-------
Q ss_conf 7808999999------871992589886547775201256403654567835789999996156643344543-------
Q gi|254780544|r 79 IPSPAVAMLT------RSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYD------- 145 (448)
Q Consensus 79 ~ptP~l~~a~------~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~------- 145 (448)
+|||+++|++ +++++++||||||||||++|||||+|+++|.+++.+.+++||+..+...........
T Consensus 99 ~PTP~vsfaV~~~~~~~~~~~a~GImITASHNP~eyNGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~v~~~~~~~~ 178 (522)
T cd05801 99 TPTPVISHAILTYNRGRTEGLADGIVITPSHNPPEDGGFKYNPPHGGPADTDITRWIEKRANALLANGLKGVKRIPLEAA 178 (522)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 78608999999876655317673499815889805686887568899699789999999998765403366676886575
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC--
Q ss_conf -32221113542566688776326310-2118966999844665433332221233322222223222355--77442--
Q gi|254780544|r 146 -SIGHAKRVDGVHDRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGIN--INLDC-- 219 (448)
Q Consensus 146 -~~~~~~~~~~~~~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~--~~~~~-- 219 (448)
..+... ..++.+.|++.+.+.++.+ ++.+++||++||+||++..+++++|+.+|++++.+++++||.| +++++
T Consensus 179 ~~~~~~~-~~d~~~~Y~~~l~~~vd~~~i~~~~lkIv~d~~~Gag~~~~~~ll~~~g~~v~~v~~~~dp~f~f~~~~~~g 257 (522)
T cd05801 179 LASGYTH-RHDFVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPYWQPIAEKYGLNLTVVNPKVDPTFRFMTLDHDG 257 (522)
T ss_pred HCCCEEE-EEECHHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 0168379-864089999999876596555016976999668987411589999882998799898257999988989986
Q ss_pred ----CCCHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCH
Q ss_conf ----210137776420-02343036753155210001332237553311356777765532002--23433322113600
Q gi|254780544|r 220 ----GSTNVLSLQRKV-HEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLL--RGNGIVTTVMSNIG 292 (448)
Q Consensus 220 ----~~~~~~~l~~~v-~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~--~~~~vv~~v~ss~~ 292 (448)
++++...++..+ .+.++|+|+|+||||||++++|++|++++||++++|+++|+++++.. ++..|+.|++||.+
T Consensus 258 ~i~~np~~p~~l~~l~~~~~~~dlgiA~DgDaDR~~vvd~~g~~l~gd~i~~ll~~~ll~~r~~~~~~~~v~~Tvvss~~ 337 (522)
T cd05801 258 KIRMDCSSPYAMAGLLKLKDKFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNKSAGVGKTLVSSSM 337 (522)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHH
T ss_conf 65789988899999997421567466127877714899789828878999999999999715015888616887237599
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEEC-----CCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 444320012111112332110111110289700134662365301-----000144423320246677755888899998
Q gi|254780544|r 293 LERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSD-----YGSTGDGLVAALQVLRYIKQYDKPVSTICH 367 (448)
Q Consensus 293 i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~ 367 (448)
++++++++|+++++|+||||||.++|.+.++.||||+|||++|.. |.+++||+++++++++++++++++++++++
T Consensus 338 l~~ia~~~G~~~~~t~vGfK~i~~~m~~~~~~fGgEeS~G~~f~~~~g~~~~~dkDGi~aall~~e~~a~~gk~l~~ll~ 417 (522)
T cd05801 338 IDRVAAALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEILAVTGKDPGQLYQ 417 (522)
T ss_pred HHHHHHHCCCCEEECCCCHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999986994798048279999999868945887143686774168851003673899999999999986969999999
Q ss_pred HHHH-CCCE-EEEEECCCCCCCCHHHH------------------HHHHHHHH---HHCC------CCCEEEEECCCCCC
Q ss_conf 6564-2300-00000567651155899------------------99987655---4307------88659996779822
Q gi|254780544|r 368 CFEE-YPQF-LRSVSVKDTSILNSSSI------------------VQAIADAE---SELR------GIDRLIVRASGTES 418 (448)
Q Consensus 368 ~l~~-~~~~-~~~~~~~~~~~~~~~~i------------------~~~~~~~~---~~~~------~~~w~liRpSgTEp 418 (448)
++.+ |+.+ +..+..+... ..+..+ .+...... ..++ +.+|++||||||||
T Consensus 418 el~~~~G~~~y~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~idG~ki~~~dgw~liRpSGTEP 496 (522)
T cd05801 418 ELTERFGEPYYARIDAPATP-EQKARLKKLSPEQVTATELAGDPILAKLTRAPGNGASIGGLKVTTANGWFAARPSGTED 496 (522)
T ss_pred HHHHHHCCCCCEEECCCCCH-HHHHHHHHCCHHHCCCCHHCCCCCEEEEECCCCCCCCCCCEEEEECCEEEEEECCCCHH
T ss_conf 99998588753130156898-99999985584325841205854012341155665556877998088589997647261
Q ss_pred EEEEEEEC-CCHHHHHHHHHHHHHHH
Q ss_conf 79999615-99899999999999998
Q gi|254780544|r 419 LIRIMAEG-DDLSRIKRIVDDLAKVI 443 (448)
Q Consensus 419 ~iriy~Ea-~~~~~~~~l~~~~~~~i 443 (448)
+||||+|| .++++++++++++.++|
T Consensus 497 kiRiy~Ea~~~ee~~~~l~~~~~~~v 522 (522)
T cd05801 497 VYKIYAESFLSEEHLKKIQKEAQEIV 522 (522)
T ss_pred HHEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 01425724889899999999998559
No 13
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=0 Score=656.27 Aligned_cols=436 Identities=24% Similarity=0.328 Sum_probs=350.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEC---CCCH
Q ss_conf 0335860155068778899999999999999972379983899966877979999999999997898799962---6780
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILG---PIPS 81 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g---~~pt 81 (448)
-|||+||||.++...+|..++..++++++.|++.++..++|+||||+|+.|+.|++.++++|.++|+.|+.++ .+||
T Consensus 41 ~FGT~G~RG~~~~~~~n~~~v~~~tq~la~y~~~~~~~~~vvIg~D~R~~S~~fa~~aa~VlaanGi~v~l~~~~~~~PT 120 (544)
T PRK07564 41 KFGTSGHRGSSLQPSFNENHILAIFQAICEYRGKQGITGPLFVGGDTHALSEPAIQSALEVLAANGVGVVIVGNGGYTPT 120 (544)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 88687567877899833999999999999999835999988998478867999999999999878988999489997887
Q ss_pred HHHHHHHHHH----CCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--------CC
Q ss_conf 8999999871----99258988654777520125640365456783578999999615664334454332--------22
Q gi|254780544|r 82 PAVAMLTRSL----RADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSI--------GH 149 (448)
Q Consensus 82 P~l~~a~~~~----~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~--------~~ 149 (448)
|++||+|+++ ++.||||||||||||+|||||+++++|+|.+++.++.||+..++...........+ +.
T Consensus 121 P~lS~aVr~~~~~~~a~~GImITASHNPpeyNGyKv~~~~Ggpa~~~it~~Ie~~~~~i~~~~~~~v~~~~~~~~~~~~~ 200 (544)
T PRK07564 121 PAVSHAILKYNRGGGLADGIVITPSHNPPEDGGIKYNPPNGGPADEDVTDAIEARANALLAYGLKGVKRIDLDRALGSMT 200 (544)
T ss_pred CHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCC
T ss_conf 29999999853365756218973688996448189767888979889999999999776432446766578778731584
Q ss_pred CCCCCCHHHHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC--------CC
Q ss_conf 1113542566688776326310-21189669998446654333322212333222222232223--5577--------44
Q gi|254780544|r 150 AKRVDGVHDRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNG--ININ--------LD 218 (448)
Q Consensus 150 ~~~~~~~~~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~--~~~~--------~~ 218 (448)
+. ..+..+.|++.+++.++.+ ++.+++|||+|||||++..+++++|+++|+++..+++.+|+ .|++ |+
T Consensus 201 v~-~~D~~~~Y~~~l~~~id~~~i~~~~lkIv~dplhGag~~~~~~il~~~g~~v~~v~~~~dp~f~f~~~~~~G~~~Pn 279 (544)
T PRK07564 201 VE-VIDLVADYVEDLENVFDFDAIRKAGLRLGVDPLGGVTGPYWKAIAERYGLDLTVVNAPVDPTFNFMPLDDDGGIRMD 279 (544)
T ss_pred EE-EECCHHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 58-85658999999987438555325897599826877647889999998199829968878898888768644675899
Q ss_pred CCCCHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCHHHH
Q ss_conf 221013777642-002343036753155210001332237553311356777765532002--23433322113600444
Q gi|254780544|r 219 CGSTNVLSLQRK-VHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLL--RGNGIVTTVMSNIGLER 295 (448)
Q Consensus 219 ~~~~~~~~l~~~-v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~--~~~~vv~~v~ss~~i~~ 295 (448)
|++++ .|+.. ..+.++|+|+|+||||||++++++.| +++|+++++++++|+++..+. .+..|+.|++||.++++
T Consensus 280 P~~~~--ala~~l~~~~~aDlgiA~DpDADR~giv~~~g-~l~~n~~~alL~~yl~~~r~~~~~~~~V~kTivTS~lld~ 356 (544)
T PRK07564 280 CSSPY--AMAGLLALKDAFDLAFANDPDGDRHGIVTPGG-LMNPNHYLAVAIAYLFHHRPGWSKGAGVGKTLVSSAMIDR 356 (544)
T ss_pred CCCHH--HHHHHHHHCCCCCEEEEECCCCCEEEEEECCC-EECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
T ss_conf 98688--99998741358767998658876144763472-2255589999999999736024788727998057189999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEE-----CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 32001211111233211011111028970013466236530-----1000144423320246677755888899998656
Q gi|254780544|r 296 FIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILS-----DYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFE 370 (448)
Q Consensus 296 ~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~-----~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~ 370 (448)
+|+++|+++++|+||||||.+.|.+.++.||||||+|+.|. .|.++|||++++++++|+++.++++++++++++.
T Consensus 357 iA~~~G~~~~et~tGFK~I~~~m~~~~~~fGgEES~G~~~l~~~g~~~vrDKDGi~aaLl~~Ei~A~~gktl~~~l~~l~ 436 (544)
T PRK07564 357 VAAKLGRKLYEVPVGFKWFVNGLDAGSIGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAVTGKSPAEIYQELW 436 (544)
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99984982799146289999887327804631254561421467777688852999999999999987949999999999
Q ss_pred H-CCC-EEEEEECCCCCCCCHHHHHHHHH-------------------HHHHH---CC------CCCEEEEECCCCCCEE
Q ss_conf 4-230-00000056765115589999987-------------------65543---07------8865999677982279
Q gi|254780544|r 371 E-YPQ-FLRSVSVKDTSILNSSSIVQAIA-------------------DAESE---LR------GIDRLIVRASGTESLI 420 (448)
Q Consensus 371 ~-~~~-~~~~~~~~~~~~~~~~~i~~~~~-------------------~~~~~---~~------~~~w~liRpSgTEp~i 420 (448)
+ |.. ++..+..+.. ....++++.+. +...+ ++ ..+|++||||||||++
T Consensus 437 ~~~G~~~y~r~d~~~~--~~~k~~~~~l~~~~~~~~~laG~~v~~~~~~~~~~~~~~dGlk~~~edGwv~vRpSGTEPki 514 (544)
T PRK07564 437 ARFGRPYYSRHDAEAT--PEQKALLSKLSPEQVSATELAGEPITASLTDAPGNGAAIGGLKVVTENGWFAARPSGTETTY 514 (544)
T ss_pred HHHCCCCEEECCCCCC--HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCEEEEEECCCCCCEE
T ss_conf 9868772342255567--78999999611134776432784224676047777577784799977989999714877389
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 999615-99899999999999998752
Q gi|254780544|r 421 RIMAEG-DDLSRIKRIVDDLAKVIPMI 446 (448)
Q Consensus 421 riy~Ea-~~~~~~~~l~~~~~~~i~~i 446 (448)
|+|+|| .+.+++++++++...++...
T Consensus 515 RiY~Es~~~~~~~~~~~~~~~~~~~~~ 541 (544)
T PRK07564 515 KIYAESFEGEEHLKQIQPEAALIVLIA 541 (544)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 999975488899987889899876787
No 14
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=0 Score=643.24 Aligned_cols=416 Identities=25% Similarity=0.339 Sum_probs=337.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf 33586015506877889999999999999997237998389996687797999999999999789879996267808999
Q gi|254780544|r 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVA 85 (448)
Q Consensus 6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~ 85 (448)
|||+||||+++ +||++++.++++||+.++.++..+++|+||||+|++|++|+++++++|+++|++|+++|.+|||+++
T Consensus 2 FGT~GiRGi~~--~~t~~~v~~~~~a~a~~l~~~~~~~~VvVG~D~R~~S~~~a~~~a~~l~s~Gi~V~~~g~~pTP~l~ 79 (459)
T cd03088 2 FGTSGLRGLVT--DLTDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDAGFRVVDCGAVPTPALA 79 (459)
T ss_pred CCCCCCCEECC--CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH
T ss_conf 89987075858--8999999999999999999758998699996899787999999999999779979978989858999
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99987199258988654777520125640365456783578999999615664334454332221113542566688776
Q gi|254780544|r 86 MLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVK 165 (448)
Q Consensus 86 ~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~ 165 (448)
|+++++++ +||||||||||++|||||||+++| ++.+..+..|+............ ..........+..+.|++.+.
T Consensus 80 ~~v~~~~~-~gImITASHNP~eyNG~K~~~~~G-~i~~~~e~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Yi~~~~ 155 (459)
T cd03088 80 LYAMKRGA-PAIMVTGSHIPADRNGLKFYRPDG-EITKADEAAILAALVELPEALFD--PAGALLPPDTDAADAYIARYT 155 (459)
T ss_pred HHHHHCCC-CEEEEECCCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCHHHHHHHHHHHHH
T ss_conf 99985468-639996578997543899988999-68868899999997420034555--445774001447999999999
Q ss_pred HCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 326310211896699984466543333222123332222222322235577442-2101377764200234303675315
Q gi|254780544|r 166 RTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDC-GSTNVLSLQRKVHEVRADIGIALDG 244 (448)
Q Consensus 166 ~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~-~~~~~~~l~~~v~~~~ad~Gia~Dg 244 (448)
+.++... .+++||++||+||+++.+++++|+.+||+++.++..+++...+++| .++++..+.+.+++.++|+|++|||
T Consensus 156 ~~~~~~~-~~~~~i~vd~~~g~g~~~~~~il~~lG~~vi~l~~~~~f~p~~~e~~~~e~~~~~~~~v~~~~aD~giA~Dg 234 (459)
T cd03088 156 DFFGAGA-LKGLRIGVYQHSSVGRDLLVRILEALGAEVVPLGRSDTFIPVDTEAVRPEDRALAAAWAAEHGLDAIVSTDG 234 (459)
T ss_pred HHCCHHH-HCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8557366-459889997788505778899999749889995788999998999999679999999998548876886458
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC----
Q ss_conf 5210001332237553311356777765532002234333221136004443200121111123321101111102----
Q gi|254780544|r 245 DGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN---- 320 (448)
Q Consensus 245 D~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~---- 320 (448)
||||++++|++|++++||++++|+++++. ...|+.++.||.+++. ...+.++++|+|||+|+.++|++
T Consensus 235 DaDR~~vvD~~G~~l~gd~l~~L~a~~l~------~~~vv~~v~s~~~~~~--~~~~~~v~~T~vG~~~i~~~m~~~~~~ 306 (459)
T cd03088 235 DGDRPLVADETGEWLRGDILGLLTARFLG------ADTVVTPVSSNSAIEL--SGFFKRVVRTRIGSPYVIAAMAEAAAA 306 (459)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHC------CCEEEEEEECHHHHHH--HCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 87602013799888373999999999865------9916965741199997--178982699636679999999997632
Q ss_pred -CCCEECCCCCCEEEEECCCC----------CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf -89700134662365301000----------1444233202466777558888999986564230000000567651155
Q gi|254780544|r 321 -NGFNVGGEQSGHIILSDYGS----------TGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNS 389 (448)
Q Consensus 321 -~~~~~g~E~sg~~~~~~~~~----------~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 389 (448)
.++++|+|+||||+++.+.. ++||+++++.+|+++++++++|+++++++|++..+...+ .+.+....
T Consensus 307 ~~~~~~G~E~sgg~~~~~~~~~~~~~~~al~~rD~~~~~l~~l~~~~~~~~~l~~l~~~l~~~~~~~~~~--~~~p~~~~ 384 (459)
T cd03088 307 GAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVLAAAKEAGIPLSELVASLPARFTASDRL--QNFPTEKS 384 (459)
T ss_pred CCCEEEEEEEECCEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH--HCCCHHHH
T ss_conf 5682899997486998982314862220301134799999999999876998999998700223645776--32867789
Q ss_pred HHHHHHHHHHH-----------------HH-------CCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 89999987655-----------------43-------078865999677982279999615998999999999
Q gi|254780544|r 390 SSIVQAIADAE-----------------SE-------LRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDD 438 (448)
Q Consensus 390 ~~i~~~~~~~~-----------------~~-------~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~ 438 (448)
..+++.+.+.. .. +++.+|++||||||||+||||+||+|++.+++|++.
T Consensus 385 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~DG~k~~~~dg~~l~iRpSgTEP~iriy~Ea~t~e~~~~ll~~ 457 (459)
T cd03088 385 QALIARLSADPEARAAFFFALGGEVASIDTTDGLRMTFANGDIVHLRPSGNAPELRCYVEADSEERARELLAR 457 (459)
T ss_pred HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECCHHHHHHHHHC
T ss_conf 9999997506777754444202420320266628999469809999757993889999973999999999866
No 15
>PTZ00150 phosphoglucomutase; Provisional
Probab=100.00 E-value=0 Score=611.96 Aligned_cols=439 Identities=20% Similarity=0.271 Sum_probs=337.2
Q ss_pred CCC-CCCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHHCC-----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 520-3358601550--6877889999999999999997237-----9983899966877979999999999997898799
Q gi|254780544|r 3 RRF-FGTDGIRGKS--NTFPITPNFMMRIGIAVGYLFRGKK-----KHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAF 74 (448)
Q Consensus 3 r~l-FGt~GiRG~~--~~~~~t~~~v~~i~~a~~~~~~~~~-----~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~ 74 (448)
++| |||+|+||.. +...||...+.+.++++|.|+.... ..+.||||||+|+.|+.|++.+|.+|.++|+.|+
T Consensus 47 ~~L~FGTaGlRg~mg~G~nrmN~~tv~~atqGla~yl~~~~~~~~~~~~gVVIgyD~R~~S~~FA~~~A~Vla~~Gi~v~ 126 (593)
T PTZ00150 47 KRLNFGTAGLRGKMCVGFNAMNVVTIMQTTQGLCSYLINTYGINLCKNRGIIFGFDGRYHSESFAHVAASVCLSKGFRVY 126 (593)
T ss_pred CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 88876184111775888750128999999999999999866853246788899627986849999999999997898899
Q ss_pred EEC-CCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC------C
Q ss_conf 962-678089999998719925898865477752012564036545678357899999961566433445433------2
Q gi|254780544|r 75 ILG-PIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDS------I 147 (448)
Q Consensus 75 ~~g-~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~------~ 147 (448)
.+. .+|||+++|++++++|+|||||||||||++|||+|+|+++|+++.++..++|...+.+.........+. +
T Consensus 127 l~~~~~PTP~lsfaVr~l~a~~GImITASHNP~~yNGyKvY~~~G~Qi~pp~d~~I~~~i~~~~~~~~~~~~~~~~~~~~ 206 (593)
T PTZ00150 127 LFAQTVATPILCYSNFKKNCLCGVMVTASHNPKLDNGYKVYAANGAQIIPPVDKNISDCILNNLEPWKDAYDYLNEDFYL 206 (593)
T ss_pred EECCCCCCCCCHHHHHCCCCCEEEEEECCCCCHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHC
T ss_conf 91899987520188861388658999727898456788874589862587677999999986367403444312302202
Q ss_pred CCCCCC----CCHHHHHHHHHHHCCCCH---HHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCCC--CCCCCCCCCCC
Q ss_conf 221113----542566688776326310---211896699984466543333222123332-22222--23222355774
Q gi|254780544|r 148 GHAKRV----DGVHDRYIEHVKRTLPRD---VTLQGLRIVVDCANGASYKVAPEVFWELGA-DVVVI--GDKPNGININL 217 (448)
Q Consensus 148 ~~~~~~----~~~~~~Yi~~l~~~~~~~---~~~~~lkvvvD~~~G~~~~~~~~il~~lg~-~~~~i--~~~pd~~~~~~ 217 (448)
.....+ .+..+.|++.+++.++.. ....+++||+|+|||++..+++++|+.+|+ +++.+ ++.|||.||+.
T Consensus 207 ~~~~li~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lkivytpmHGtG~~~v~~~l~~~G~~~~~~V~eQ~~pD~~Fptv 286 (593)
T PTZ00150 207 KDTSLVEDIYFEMYDSFMDDLKHEFNFNCHRNSRTKLAIVYSPMHGIGRKFVQGIMHIVGFNNLLTVPQQALPDADFSTV 286 (593)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 65421333369999999999987607213331478964997899887587999999981999608952456689999999
Q ss_pred C-CCCCH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCCC
Q ss_conf 4-22101---377764200234303675315521000133---22375533113567777655320022-----343332
Q gi|254780544|r 218 D-CGSTN---VLSLQRKVHEVRADIGIALDGDGDRVIIVD---EKGAIVNGDQIMALIAREWMSHSLLR-----GNGIVT 285 (448)
Q Consensus 218 ~-~~~~~---~~~l~~~v~~~~ad~Gia~DgD~DR~~ivd---~~G~~i~~d~~~~lla~~ll~~~~~~-----~~~vv~ 285 (448)
. |+|+. +....+.+++.++|+++|+||||||+++++ +.+++++||++++|+++|++.....+ +..++.
T Consensus 287 ~~PNPEe~~al~la~~~a~~~~adliiAtDPDADRlgva~~~~~~~~~ltGNe~g~Ll~~~ll~~~~~~~~~~~~~~vv~ 366 (593)
T PTZ00150 287 SFPNPEEKGALDMSMELADKVCSPIVVANDPDADRFACAEKFNNKWKIFSGDELGIIFAYHLMKQNEKKNIDKSKHVFIC 366 (593)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99998744578999999886489999950898772688886389637778119999999999998886489877867999
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC-----CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHH---H
Q ss_conf 21136004443200121111123321101111102-----897001346623653010001444233202466777---5
Q gi|254780544|r 286 TVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN-----NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIK---Q 357 (448)
Q Consensus 286 ~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~-----~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~---~ 357 (448)
|++||.+++++|+++|+++++|+||||||.+++.+ ..++||||||+|+++++|.++|||+.++++++|+.+ .
T Consensus 367 TiVSS~ll~~IA~~~G~~~~etlTGFK~Ig~~~~~~~~~~~~~lfG~EES~Gyl~~~~vrDKDGi~Aa~l~~Emaa~~~~ 446 (593)
T PTZ00150 367 TVVCSRMLKKLCEKYGYKYDETLTGFKWIINKAIDLNEENYTILYCYEEALGHALTKHVKDKCGISALAYWIEIAVYLYE 446 (593)
T ss_pred EEECHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98441789999998299447458771578888987640585078641101566158878884389999999999999997
Q ss_pred CCCCHHHHHHH-HHHCCCEEEE---EECCCCCCCCHHHHHHHHHHH---H------------------------------
Q ss_conf 58888999986-5642300000---005676511558999998765---5------------------------------
Q gi|254780544|r 358 YDKPVSTICHC-FEEYPQFLRS---VSVKDTSILNSSSIVQAIADA---E------------------------------ 400 (448)
Q Consensus 358 ~~~~l~~l~~~-l~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~---~------------------------------ 400 (448)
++++|.+.+++ +.+|+.+..+ ..+.+. .....+++.+... +
T Consensus 447 ~g~tL~d~L~eiy~~yGy~~~~~~~~~~~~~--~~i~~i~~~~r~~~~~~~~i~~~~V~~v~D~~~g~~~~~~d~~~~~~ 524 (593)
T PTZ00150 447 NGLTFHEYLENIREEIGYFVNNNGYYIVLDP--NDIVSIFNDFRGNGLYKSELGSYKIIHIRDLTTGYDSTTADGKSLIA 524 (593)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEEECCH--HHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEECC
T ss_conf 3999999999999983973325345872798--99999999986189986301674578998444564444789855126
Q ss_pred ---------HHCCCCCEEEEECCCCCCEEEEEEEC--CCHHHHHHHHHHHHHHH
Q ss_conf ---------43078865999677982279999615--99899999999999998
Q gi|254780544|r 401 ---------SELRGIDRLIVRASGTESLIRIMAEG--DDLSRIKRIVDDLAKVI 443 (448)
Q Consensus 401 ---------~~~~~~~w~liRpSgTEp~iriy~Ea--~~~~~~~~l~~~~~~~i 443 (448)
-.+++.+|+.||||||||+||+|+|. .+.+.+++.++++.+.|
T Consensus 525 ~~p~s~~l~~~ledgs~i~iRpSGTEPKiK~Y~e~~~~~~~~a~~~l~~~~~~i 578 (593)
T PTZ00150 525 PTPDSQNITIHFENTAILTIRASGTEPKVKWYAEISRDSYEQAKEEIDQLIDEV 578 (593)
T ss_pred CCCCCCEEEEEECCCEEEEEECCCCHHHEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 899555699998399799998678526079999985497999999999999999
No 16
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=617.01 Aligned_cols=351 Identities=34% Similarity=0.570 Sum_probs=317.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 03358601550687788999999999999999723799838999668779799999999999978987999626780899
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV 84 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l 84 (448)
||||+||||.+|. ++||+.+.++|.+++.
T Consensus 1 ~Fg~~Gir~~~~~-~~tP~~a~~~~~~~g~-------------------------------------------------- 29 (355)
T cd03084 1 IFGTSGVRGVVGD-DITPETAVALGQAIGS-------------------------------------------------- 29 (355)
T ss_pred CCCCCCEEEEECC-CCCCHHHHHHHHHHCC--------------------------------------------------
T ss_conf 9687886688579-9885999999999789--------------------------------------------------
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99998719925898865477752012564036545678357899999961566433445433222111354256668877
Q gi|254780544|r 85 AMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHV 164 (448)
Q Consensus 85 ~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l 164 (448)
.|||||||||||++||||||++++|.++.++.+++||+.+++........ ...+......++.+.|++++
T Consensus 30 ---------~gGImITASHNP~~yNGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~-~~~~~~~~~~d~~~~Y~~~l 99 (355)
T cd03084 30 ---------TGGIMITASHNPPEDNGIKFVDPDGEPIASEEEKAIEDLAEKEDEPSAVA-YELGGSVKAVDILQRYFEAL 99 (355)
T ss_pred ---------CEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEECCHHHHHHHHH
T ss_conf ---------86999972899930657999859998897499999999970554445663-23487365144699999999
Q ss_pred HHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC-CCHHHHHHHHHCCCCCCEEE
Q ss_conf 6326310-2118966999844665433332221233322222223222355774--422-10137776420023430367
Q gi|254780544|r 165 KRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININL--DCG-STNVLSLQRKVHEVRADIGI 240 (448)
Q Consensus 165 ~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~--~~~-~~~~~~l~~~v~~~~ad~Gi 240 (448)
.+.++.+ ++.+++|||+||+||+++.+++++|+++||+++.+|++||+.||+. +|. ++++..+.+.+++.++|+|+
T Consensus 100 ~~~~~~~~i~~~~~kIvvD~~nG~~~~~~~~ll~~lg~~v~~ln~~~dg~f~~~~p~p~~~~~l~~l~~~v~~~~adlGi 179 (355)
T cd03084 100 KKLFDVAALSNKKFKVVVDSVNGVGGPIAPQLLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAEKADFGV 179 (355)
T ss_pred HHHCCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 87669756505797899989998551015999997298499952115888776789988743799999997522887899
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 53155210001332237553311356777765532002234333221136004443200121111123321101111102
Q gi|254780544|r 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN 320 (448)
Q Consensus 241 a~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~ 320 (448)
+|||||||++++|++|++++||++++|++++++++.. ++..||.|+.||.+++++++++|++++||+||||||.++|.+
T Consensus 180 a~DgDaDR~~~vd~~G~~i~gd~~~~lla~~l~~~~~-~~~~VV~tv~ts~~i~~~~~~~g~~~~~t~vG~k~i~~~m~~ 258 (355)
T cd03084 180 AFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFN-PRGGVVKTVVSSGALDKVAKKLGIKVIRTKTGFKWVGEAMQE 258 (355)
T ss_pred EECCCCCEEEEECCCCEEECCCHHHHHHHHHHHHHCC-CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
T ss_conf 9659987799994897278844899999999997248-898289710153167999998334544456676999987650
Q ss_pred CCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 89700134662365301000144423320246677755888899998656423000000056765115589999987655
Q gi|254780544|r 321 NGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAE 400 (448)
Q Consensus 321 ~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 400 (448)
.++.+|||+|||++|++|.+++||+++++++|+++++++++++++++++|++++...++
T Consensus 259 ~~~~~ggE~SGh~~~~~~~~~~Dgi~a~l~~le~la~~~~~lsel~~~l~~~~~~~~~~--------------------- 317 (355)
T cd03084 259 GDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGKSLSELFSELPRYYYIRLKV--------------------- 317 (355)
T ss_pred CCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEECC---------------------
T ss_conf 68289972658875266586885999999999999985959999998534525121258---------------------
Q ss_pred HHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 4307886599967798227999961599899999999999998
Q gi|254780544|r 401 SELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 (448)
Q Consensus 401 ~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i 443 (448)
.+|++||||||||++|||+||++++.+++++++++++|
T Consensus 318 -----~~w~lvRpSgTEP~iRvy~Ea~~~~~~~~l~~~~~elv 355 (355)
T cd03084 318 -----RGWVLVRASGTEPAIRIYAEADTQEDVEQIKKEARELV 355 (355)
T ss_pred -----CEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf -----63999961499838999996599999999999998369
No 17
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=0 Score=608.33 Aligned_cols=423 Identities=26% Similarity=0.324 Sum_probs=330.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEC---CCC
Q ss_conf 033586015506877889999999999999997237-9983899966877979999999999997898799962---678
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKK-KHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILG---PIP 80 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~-~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g---~~p 80 (448)
=|||+||||.++++ ..+..+.+++++++++++.+. .+++|+||||+|+.|+.|++.++++|.++|++|+.++ .+|
T Consensus 12 kfGTsGlRg~~~~f-~~~~~l~~~~Qai~~~~~~~~~~g~~vvIGyD~R~~S~~fA~~~A~VlaanGi~v~l~~~~~~~P 90 (548)
T cd03085 12 KPGTSGLRKKVKVF-QQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRYYNKEAIQIIIKIAAANGVGKVVVGQNGLLS 90 (548)
T ss_pred CCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 99760127744234-67326999999999887751677985999857886789999999999987899799958998377
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCC---CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC---C--CCCCCCCC--
Q ss_conf 0899999987199258988654777---520125640365456783578999999615664334---4--54332221--
Q gi|254780544|r 81 SPAVAMLTRSLRADVGVMISASHNP---YQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYL---S--CYDSIGHA-- 150 (448)
Q Consensus 81 tP~l~~a~~~~~~~gGI~iTaSHNP---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~---~--~~~~~~~~-- 150 (448)
||+++|++++++|++|||||||||| .+|||+|+++++|+|.+++.+++|++..+....... . ..+..+..
T Consensus 91 TP~lSfaVr~l~a~aGImITASHNP~~p~~dnGyKv~~~~Ggpa~~~it~~I~~~~~~i~~~~~~~~~~~d~~~~g~~~~ 170 (548)
T cd03085 91 TPAVSAVIRKRKATGGIILTASHNPGGPEGDFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVDLSKIGVTKF 170 (548)
T ss_pred CCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEEE
T ss_conf 85889999971887359982678989888877579836889969768899999998644554215655689466162331
Q ss_pred ------CCCCCHHHHHHHHHHHCCCCHHH-----CCCCEEEEEECCCCCCCCCCCCC-CCCCCCC-CCCCCCCCCCCC--
Q ss_conf ------11354256668877632631021-----18966999844665433332221-2333222-222232223557--
Q gi|254780544|r 151 ------KRVDGVHDRYIEHVKRTLPRDVT-----LQGLRIVVDCANGASYKVAPEVF-WELGADV-VVIGDKPNGINI-- 215 (448)
Q Consensus 151 ------~~~~~~~~~Yi~~l~~~~~~~~~-----~~~lkvvvD~~~G~~~~~~~~il-~~lg~~~-~~i~~~pd~~~~-- 215 (448)
...-+..+.|++.+++.++.+.. .++||||+|+|||+++.++.++| +.+|+.. ..+|++||+.|+
T Consensus 171 ~~~~~~ve~iD~~~~Yi~~l~~~~D~~~I~~~~~~~~lkivydpmhGvg~~~~~~il~~~lG~~~~~vv~~~pdPdF~g~ 250 (548)
T cd03085 171 GGKPFTVEVIDSVEDYVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPESSVVNCTPLPDFGGG 250 (548)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 36763389846589999999874489988643247897599836867630679999999709994268778307988998
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-C-CC-CCCCCCCCCCCH
Q ss_conf 74422101377764200234303675315521000133223755331135677776553200-2-23-433322113600
Q gi|254780544|r 216 NLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSL-L-RG-NGIVTTVMSNIG 292 (448)
Q Consensus 216 ~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~-~-~~-~~vv~~v~ss~~ 292 (448)
+|+|+++++..|.+.+++.++|+|+|+||||||++++ ++|.+++|++.+++++.|++.... . ++ ..|+.|++||.+
T Consensus 251 ~P~P~~~~a~~L~~~~~~~~aDlgiA~DpDADR~~I~-g~g~~v~~~~~lall~~~~~~~~~~~~~g~~~v~kTivTS~m 329 (548)
T cd03085 251 HPDPNLTYAKDLVELMKSGEPDFGAASDGDGDRNMIL-GKGFFVTPSDSVAVIAANAKLIPYFYKGGLKGVARSMPTSGA 329 (548)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEC-CCCCEECCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCHHH
T ss_conf 9698768999999997267987899728710465573-488365886279999999996613453587327886121789
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHH-HH
Q ss_conf 44432001211111233211011111028970013466236530100014442332024667775588889999865-64
Q gi|254780544|r 293 LERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCF-EE 371 (448)
Q Consensus 293 i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l-~~ 371 (448)
++++|+.+|.++++|+||||||.+.|.+.++.||||||+|+ .++|.++|||++++++++++++.+++++.++++++ .+
T Consensus 330 ld~IA~~~G~~~~ETltGFKwig~~m~~~~~~~ggEES~G~-~~~~vrDKDGI~A~l~~~e~~A~~Gktl~d~l~~l~~~ 408 (548)
T cd03085 330 LDRVAKKLGIPLFETPTGWKFFGNLMDAGKLSLCGEESFGT-GSDHIREKDGLWAVLAWLSILAHRNVSVEDIVKEHWQK 408 (548)
T ss_pred HHHHHHHCCCCEEECCCCEEEEEECCCCCCEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999981994598487306630010367513520124564-68876685189999999999998399999999999999
Q ss_pred CCCE-EEEEECCCCCCCCHHHHHHHHHHHH---------------------------------------HHCCCCCEEEE
Q ss_conf 2300-0000056765115589999987655---------------------------------------43078865999
Q gi|254780544|r 372 YPQF-LRSVSVKDTSILNSSSIVQAIADAE---------------------------------------SELRGIDRLIV 411 (448)
Q Consensus 372 ~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~---------------------------------------~~~~~~~w~li 411 (448)
|... +.....+........++++.+.... -.+++.+|++|
T Consensus 409 yG~~~y~r~d~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~v~~~~d~~~~d~~d~~~~~~~glk~~ledGs~~~v 488 (548)
T cd03085 409 YGRNFYTRYDYEEVDSEAANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYTDPVDGSVSKKQGLRIIFEDGSRIIF 488 (548)
T ss_pred HCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
T ss_conf 67663001030137878999999999864313356765455755999704655468777865668869999729859999
Q ss_pred ECCCCCCE---EEEEEEC--CCHH
Q ss_conf 67798227---9999615--9989
Q gi|254780544|r 412 RASGTESL---IRIMAEG--DDLS 430 (448)
Q Consensus 412 RpSgTEp~---iriy~Ea--~~~~ 430 (448)
|||||||+ +|+|+|+ +|++
T Consensus 489 RPSGTEPk~~~lK~Y~E~~~~d~~ 512 (548)
T cd03085 489 RLSGTGSSGATIRLYIESYEKDPS 512 (548)
T ss_pred ECCCCCCCCCCEEEEEEEECCCHH
T ss_conf 778888889738999999558825
No 18
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852 Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose . Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=100.00 E-value=0 Score=538.75 Aligned_cols=445 Identities=21% Similarity=0.285 Sum_probs=381.2
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE-----
Q ss_conf 652033586015506877889999999999999997237998389996687797999999999999789879996-----
Q gi|254780544|r 2 KRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL----- 76 (448)
Q Consensus 2 ~r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~----- 76 (448)
|+.-|||+|+||......||+.|+..|++|++.+.+.++..+++.||+|++..|+....++.++|.+|||+|+.-
T Consensus 38 ~~V~FGTSGHRGsA~~~tFNE~HILAi~QAv~~~R~~~G~TGP~y~G~DtHaLSEPA~~s~LEVLaAN~v~~~v~tat~~ 117 (553)
T TIGR01132 38 QKVEFGTSGHRGSALKGTFNEAHILAITQAVVDYRAAQGITGPLYIGKDTHALSEPAFVSALEVLAANQVEVIVQTATEN 117 (553)
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 42035788765345778766478999999999999727820351116775425406899999998746725888402247
Q ss_pred -CCCCHHHHHHHHHHHC------CCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf -2678089999998719------925898865477752012564036545678357899999961566433445433222
Q gi|254780544|r 77 -GPIPSPAVAMLTRSLR------ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGH 149 (448)
Q Consensus 77 -g~~ptP~l~~a~~~~~------~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~ 149 (448)
+.+|||.+||||..++ ..-||+||.|||||++.|||++.|+|+|..++.++.|++..++.....++..+++..
T Consensus 118 ~ryTPTPavS~AILtyN~G~~~~lADGIviTPSHNPP~DGGiKYNPP~GGPA~~~~T~~i~~RAN~~l~~~~~~VKRl~~ 197 (553)
T TIGR01132 118 NRYTPTPAVSHAILTYNKGRKEALADGIVITPSHNPPEDGGIKYNPPNGGPADTEATQAIEDRANELLKAGLKGVKRLPL 197 (553)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 88889646657887412678877656147758777478867640774458886688899999999999722375232328
Q ss_pred -------CCCCCCHHHHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
Q ss_conf -------1113542566688776326310-2118966999844665433332221233322222223222355-------
Q gi|254780544|r 150 -------AKRVDGVHDRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGIN------- 214 (448)
Q Consensus 150 -------~~~~~~~~~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~------- 214 (448)
.....|+...|++.|.+.+|.. |+..+||+-|||+.|++..||.+|-++.++++..+|+.-|+.|
T Consensus 198 ~~A~~s~~~~~~D~v~pYV~~L~~vvD~aaI~~Agl~lGvDPLGGa~v~YW~~Ia~~y~L~lt~Vn~~vD~tf~FM~LD~ 277 (553)
T TIGR01132 198 ARALKSETVKEHDLVKPYVDDLADVVDLAAIRKAGLRLGVDPLGGAGVDYWKEIAEKYNLDLTLVNPAVDPTFRFMTLDK 277 (553)
T ss_pred HHHHHHHHHHHHCCCCCHHHCCCCEEEHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf 99986545554303322110111124066786589777234677787367899998757864765544264100244468
Q ss_pred ---CCCCCCCCH-HHHHHH--HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCC
Q ss_conf ---774422101-377764--2002343036753155210001332237553311356777765532002234--33322
Q gi|254780544|r 215 ---INLDCGSTN-VLSLQR--KVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGN--GIVTT 286 (448)
Q Consensus 215 ---~~~~~~~~~-~~~l~~--~v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~--~vv~~ 286 (448)
++++|.+++ +..|.+ .-.+.++|+.+..|+|+||++|||.+-.+++||+++++..+||-+++.++.. .|-+|
T Consensus 278 DG~IRMDCSSp~AMAgL~~t~fG~~d~YdlAfgND~D~DRHGIVTP~~GLmNPNHyLaVaI~YLy~hR~~W~~~~AvGKT 357 (553)
T TIGR01132 278 DGKIRMDCSSPYAMAGLLATMFGLKDKYDLAFGNDPDYDRHGIVTPDEGLMNPNHYLAVAIEYLYSHRQQWSGDVAVGKT 357 (553)
T ss_pred CCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 88774446877799999998720553100101577887767304488778884179999999998507775455000202
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEEC-----CCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 113600444320012111112332110111110289700134662365301-----000144423320246677755888
Q gi|254780544|r 287 VMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSD-----YGSTGDGLVAALQVLRYIKQYDKP 361 (448)
Q Consensus 287 v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~l~~le~l~~~~~~ 361 (448)
++||.+||++....|.+++|+|||||||.+-+....+.||||||.|..|-. |..+|||++.+||..|+++.+|++
T Consensus 358 lVSSsmIDrVva~lgR~l~EVPVGFKWFVdGL~~g~fGFGGEESAGASFLr~dGt~W~TDKDGiIm~LLAAEItAvTGk~ 437 (553)
T TIGR01132 358 LVSSSMIDRVVADLGRQLVEVPVGFKWFVDGLLDGSFGFGGEESAGASFLRKDGTVWTTDKDGIIMCLLAAEITAVTGKN 437 (553)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 13345676664135887888627503433011047557674012200323047580244640799999998898651788
Q ss_pred HHHHHHHHHH-CCC-EEEEEEC-----------------CCCCCCCHHHHHHHHHHHHHHCC---------CCCEEEEEC
Q ss_conf 8999986564-230-0000005-----------------67651155899999876554307---------886599967
Q gi|254780544|r 362 VSTICHCFEE-YPQ-FLRSVSV-----------------KDTSILNSSSIVQAIADAESELR---------GIDRLIVRA 413 (448)
Q Consensus 362 l~~l~~~l~~-~~~-~~~~~~~-----------------~~~~~~~~~~i~~~~~~~~~~~~---------~~~w~liRp 413 (448)
.++-.++|-. |.. ++..+.- .-...+..+.|-.++...+++-. ..+||.-||
T Consensus 438 P~~~Y~~La~~~G~p~Y~Ri~A~A~~~QK~~L~kLSpd~VsA~~LAGdaITAkLT~APGNgAaiGGLKVtT~~gWFAARP 517 (553)
T TIGR01132 438 PQQHYDELAAKYGDPIYARIDAPATSAQKARLKKLSPDMVSATTLAGDAITAKLTKAPGNGAAIGGLKVTTANGWFAARP 517 (553)
T ss_pred HHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCCCEEECCCCCEECCC
T ss_conf 75789999998388300010245897789998415800002545248625786326787530006520012455220378
Q ss_pred CCCCCEEEEEEEC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 7982279999615-99899999999999998752
Q gi|254780544|r 414 SGTESLIRIMAEG-DDLSRIKRIVDDLAKVIPMI 446 (448)
Q Consensus 414 SgTEp~iriy~Ea-~~~~~~~~l~~~~~~~i~~i 446 (448)
||||.+.|||+|| +++++++++.++..++|+++
T Consensus 518 SGTEdvYKIYaESF~g~~Hl~~i~~eA~~iV~~v 551 (553)
T TIGR01132 518 SGTEDVYKIYAESFKGEEHLKQIEKEAEEIVDEV 551 (553)
T ss_pred CCCCCCHHHECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8861310000004588889999999999999985
No 19
>KOG1220 consensus
Probab=100.00 E-value=0 Score=508.62 Aligned_cols=426 Identities=22% Similarity=0.294 Sum_probs=338.2
Q ss_pred CCCCC-CCCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHHCCCC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 96520-3358601550--687788999999999999999723799--838999668779799999999999978987999
Q gi|254780544|r 1 MKRRF-FGTDGIRGKS--NTFPITPNFMMRIGIAVGYLFRGKKKH--RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFI 75 (448)
Q Consensus 1 m~r~l-FGt~GiRG~~--~~~~~t~~~v~~i~~a~~~~~~~~~~~--~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~ 75 (448)
|-.++ |||.|+||.. +...+|+..+.++++.++.+++++... ..|+||||.|++|+.|+++++.+|..+|+.|++
T Consensus 56 ~d~Ri~fgt~GlRg~m~agf~~mnel~~iq~~qg~a~yl~~~~~~~~~giviG~D~R~~S~~fA~l~a~vf~~~g~~v~l 135 (607)
T KOG1220 56 LDTRIKFGTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELVAAVFLLNGFKVYL 135 (607)
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 03010243243324433575036689999987899999997477655238982377633277999999999767965998
Q ss_pred EC-CCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCC
Q ss_conf 62-678089999998719925898865477752012564036545678357899999961566433445433--222111
Q gi|254780544|r 76 LG-PIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDS--IGHAKR 152 (448)
Q Consensus 76 ~g-~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~--~~~~~~ 152 (448)
++ .+|||++.|++.+++|++||||||||||.+|||+|+|+.+|++|.+.+.++|...++....++.+.|+. +.....
T Consensus 136 f~~~v~TP~vpfav~~l~~dAgIMiTASHnPk~dNGyKvYwsNG~qii~PhD~~I~~~~~~nl~p~~s~wd~slv~s~~l 215 (607)
T KOG1220 136 FSELVPTPFVPFAVLTLGADAGIMITASHNPKEDNGYKVYWSNGAQIISPHDEKISDSIEANLEPRLSSWDDSLVKSHPL 215 (607)
T ss_pred ECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHH
T ss_conf 43545787416678774567148995267852217878994587605480237799999844676642002667753523
Q ss_pred CC----CHHHHHHHHHHHCCCCH----HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC-CCCC
Q ss_conf 35----42566688776326310----21189669998446654333322212333222---2222322235577-4422
Q gi|254780544|r 153 VD----GVHDRYIEHVKRTLPRD----VTLQGLRIVVDCANGASYKVAPEVFWELGADV---VVIGDKPNGININ-LDCG 220 (448)
Q Consensus 153 ~~----~~~~~Yi~~l~~~~~~~----~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~---~~i~~~pd~~~~~-~~~~ 220 (448)
.+ ...+.|.+.+++.++.- .-..++++|++++||+++.+..++|+.+|+.. +....+|||.||+ +-|+
T Consensus 216 ~~d~~~~~~~~~~e~~k~~l~~~~~e~n~~s~~~fVyta~hGvG~~F~~~al~~~~~~~~~~v~eq~~Pdp~FPt~~~PN 295 (607)
T KOG1220 216 LHDILAVIIPPYFEVYKELLPCFHREANPLSGLKFVYTAGHGVGGFFVKKALEKLGLDTMISVPEQLEPDPMFPTVPFPN 295 (607)
T ss_pred HCCCHHCCCHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 21840013667899998507507666345788518994687765788999999808985200403217999998889989
Q ss_pred CCHHHHHH---HHHCCCCCCEEEEECCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCC
Q ss_conf 10137776---42002343036753155210001332---2375533113567777655320022343----33221136
Q gi|254780544|r 221 STNVLSLQ---RKVHEVRADIGIALDGDGDRVIIVDE---KGAIVNGDQIMALIAREWMSHSLLRGNG----IVTTVMSN 290 (448)
Q Consensus 221 ~~~~~~l~---~~v~~~~ad~Gia~DgD~DR~~ivd~---~G~~i~~d~~~~lla~~ll~~~~~~~~~----vv~~v~ss 290 (448)
|++...|. +.+.++++|+++++|||+||+++++. +|+.++||+++||++++.+++++.+... +..+.+||
T Consensus 296 PEek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek~~G~wr~fnGNElgALl~~~~le~~k~~~~~~~~~ml~s~vSs 375 (607)
T KOG1220 296 PEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEHKGSTPVQDVSMLNSTVSS 375 (607)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHEECCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 32177999999987504884899508974234520135785035163289999999999866688853103556668788
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCHHHHHH---C-CC-CEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHC----CCC
Q ss_conf 00444320012111112332110111110---2-89-700134662365301000144423320246677755----888
Q gi|254780544|r 291 IGLERFIAGLGLSLKRTEVGDRYIMEYMK---N-NG-FNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQY----DKP 361 (448)
Q Consensus 291 ~~i~~~a~~~g~~v~~t~vG~k~i~~~~~---~-~~-~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~----~~~ 361 (448)
.++..+|+..|+++.+|.|||||+.++.. + +. ..|++|+|+|++|+.+..++||+++++++++++++. +.+
T Consensus 376 ~l~~~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a~~~~~lr~~~~~s 455 (607)
T KOG1220 376 GLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFASMACRLRLAGNLS 455 (607)
T ss_pred HHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998738333321445316667889988437644666132227544667527630889999999999998714887
Q ss_pred HHH-HHHHHHHCCCEEEEEE---CCCC-CCCCHHHHHHHHHHH---HH----H---------------------------
Q ss_conf 899-9986564230000000---5676-511558999998765---54----3---------------------------
Q gi|254780544|r 362 VST-ICHCFEEYPQFLRSVS---VKDT-SILNSSSIVQAIADA---ES----E--------------------------- 402 (448)
Q Consensus 362 l~~-l~~~l~~~~~~~~~~~---~~~~-~~~~~~~i~~~~~~~---~~----~--------------------------- 402 (448)
+++ |.+.+++|........ |.++ ......+-++.+... ++ +
T Consensus 456 l~e~l~~l~e~yg~~~~~~~y~l~~~pe~~~~lf~~lR~~~~~~~yp~~ig~e~ev~~~rdlT~g~d~s~~d~ka~lpv~ 535 (607)
T KOG1220 456 LSEVLEDLYERYGYHSTANSYRLCIDPEVIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRDLTTGYDVSSPDHKAVLPVS 535 (607)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEEECEEEEECCCCCCCCCCCCC
T ss_conf 88999999986176402247897069950578998876334445664011231014554303235524888886335435
Q ss_pred ---------CCCCCEEEEECCCCCCEEEEEEEC
Q ss_conf ---------078865999677982279999615
Q gi|254780544|r 403 ---------LRGIDRLIVRASGTESLIRIMAEG 426 (448)
Q Consensus 403 ---------~~~~~w~liRpSgTEp~iriy~Ea 426 (448)
..+..|+.+|-|+|||++++|+|+
T Consensus 536 ~ss~~vTf~~~~~~~~tlR~SgtePkik~yie~ 568 (607)
T KOG1220 536 TSSQMVTFTFNNGGVVTLRTSGTEPKIKLYIEA 568 (607)
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 411236775157679998548888641201976
No 20
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=459.17 Aligned_cols=349 Identities=25% Similarity=0.368 Sum_probs=264.4
Q ss_pred CEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC-----------CCC-------CCCCC----
Q ss_conf 25898865477752012564036545678357899999961566433445-----------433-------22211----
Q gi|254780544|r 94 DVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSC-----------YDS-------IGHAK---- 151 (448)
Q Consensus 94 ~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~-----------~~~-------~~~~~---- 151 (448)
.-||||||||||++||||||++++|..++++.++.||++++......... .+. +|+-+
T Consensus 36 ~~GVmITASHNP~~dNGiK~f~~~G~kL~~~~E~~ie~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIGRDtR~Sg 115 (513)
T cd03086 36 TIGVMITASHNPVEDNGVKIVDPDGEMLEESWEPYATQLANASDDELLVLVLMLISVKELNIDLSVPANVFVGRDTRPSG 115 (513)
T ss_pred CEEEEEECCCCCHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCH
T ss_conf 18999982789903578879899988279899999999745875566666554211233302334565068621577667
Q ss_pred -----------------------------------------CCCCHHHHHHHHHHHCCC------CHHHCCCCEEEEEEC
Q ss_conf -----------------------------------------135425666887763263------102118966999844
Q gi|254780544|r 152 -----------------------------------------RVDGVHDRYIEHVKRTLP------RDVTLQGLRIVVDCA 184 (448)
Q Consensus 152 -----------------------------------------~~~~~~~~Yi~~l~~~~~------~~~~~~~lkvvvD~~ 184 (448)
......+.|++++.+.+. .....+++||++||+
T Consensus 116 ~~L~~av~~gl~s~g~~v~d~G~~tTP~l~y~V~~~n~~~~~~~~~~~~y~~~~~~~f~~l~~~~~~~~~~~~kvvvD~a 195 (513)
T cd03086 116 PALLQALLDGLKALGGNVIDYGLVTTPQLHYLVRAANTEGAYGEPTEEGYYEKLSKAFNELYNLLQDGGDEPEKLVVDCA 195 (513)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 99999999888762975886232278148788776156555566525679999999999986334445678887999899
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCCCCC-CCCCCCCCCCHHHHHH----HHHCCCCCCEEEEECCCCCCCCC--CCCC
Q ss_conf 665433332221233--3222222232223-5577442210137776----42002343036753155210001--3322
Q gi|254780544|r 185 NGASYKVAPEVFWEL--GADVVVIGDKPNG-ININLDCGSTNVLSLQ----RKVHEVRADIGIALDGDGDRVII--VDEK 255 (448)
Q Consensus 185 ~G~~~~~~~~il~~l--g~~~~~i~~~pd~-~~~~~~~~~~~~~~l~----~~v~~~~ad~Gia~DgD~DR~~i--vd~~ 255 (448)
||+++..++++++.+ ++++..+|+.+++ ..+|.+|++++++..+ ..+....+|+|++|||||||+++ +|++
T Consensus 196 NG~a~~~~~~l~~~l~~~~~v~v~n~~~~~~~~iN~~cGa~~v~~~~~~p~~~~~~~~~~~~~A~DGDADRli~~~vde~ 275 (513)
T cd03086 196 NGVGALKLKELLKRLKKGLSVKIINDGEEGPELLNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRLVYFYPDSS 275 (513)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCCCCCHHCCCCCCHHHHHHCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 74677888999987504861899968999800015656876311032110555541122446654488763789998799
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHC---CCC---CCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCCCCHHHHHHCCCCEEC
Q ss_conf 375--5331135677776553200---223---4333221136004443200-121111123321101111102897001
Q gi|254780544|r 256 GAI--VNGDQIMALIAREWMSHSL---LRG---NGIVTTVMSNIGLERFIAG-LGLSLKRTEVGDRYIMEYMKNNGFNVG 326 (448)
Q Consensus 256 G~~--i~~d~~~~lla~~ll~~~~---~~~---~~vv~~v~ss~~i~~~a~~-~g~~v~~t~vG~k~i~~~~~~~~~~~g 326 (448)
|++ ++||++++|++.|+.+... .+. ..+|.|+.||....+++++ .|+++++|+||+||+.++|++.++.++
T Consensus 276 G~~~lvDGD~il~llA~~~~~~~~~~~~~~~l~~gvV~T~~sN~~s~~~l~~~~gi~v~~t~vG~k~v~~~~~~~digi~ 355 (513)
T cd03086 276 NKFHLLDGDKIATLFAKFIKELLKKAGEELKLTIGVVQTAYANGASTKYLEDVLKVPVVCTPTGVKHLHHAAEEFDIGVY 355 (513)
T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEE
T ss_conf 98521372199999999999998624566673222799852253679999984397589916607999999985085256
Q ss_pred CCCCCE--EEEECC------------------------------CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 346623--653010------------------------------001444233202466777558888999986564230
Q gi|254780544|r 327 GEQSGH--IILSDY------------------------------GSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQ 374 (448)
Q Consensus 327 ~E~sg~--~~~~~~------------------------------~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~ 374 (448)
||.||| ++|+++ ++++||+.++++++.++++.+++++++.+.+++|||
T Consensus 356 fE~nGhG~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ttGDgi~~~l~~~~~l~~~~~s~~~l~~~~~~~Pq 435 (513)
T cd03086 356 FEANGHGTVLFSESALAKIEENSSLSDEQEKAAKTLLAFSRLINQTVGDAISDMLAVELILAALGWSPQDWDNLYTDLPN 435 (513)
T ss_pred EEECCCEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf 31037704995577877886520246420037899999987425777368999999999999819998999864642572
Q ss_pred EEEEEECCCCCCCCH----------HHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 000000567651155----------899999876554307886599967798227999961599899999999999998
Q gi|254780544|r 375 FLRSVSVKDTSILNS----------SSIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 (448)
Q Consensus 375 ~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i 443 (448)
...+++++++...+. ..+++.++....+++ .+|++||||||||++|||+||+|++.+++++++++++|
T Consensus 436 ~~~nv~v~~k~~~~~~~~e~~~~~p~~lq~~Id~~~~~~~-~grvlVRpSGTEPlvRV~vEA~~~e~a~~l~~ei~~~V 513 (513)
T cd03086 436 RQLKVKVPDRSVIKTTDAERRLVEPKGLQDKIDAIVAKYN-NGRAFVRPSGTEDVVRVYAEAATQEEADELANEVAELV 513 (513)
T ss_pred EEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 3777871672000142566653271879999999996149-85899923799718799982299999999999998459
No 21
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=447.45 Aligned_cols=440 Identities=21% Similarity=0.276 Sum_probs=336.9
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CCC
Q ss_conf 52033586015506877889999999999999997237998389996687797999999999999789879996---267
Q gi|254780544|r 3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL---GPI 79 (448)
Q Consensus 3 r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~---g~~ 79 (448)
..-|||+|+||.+.++.+++.++..+.+|+..++.+...+.+++||.|+|..|+..-+.+++.+.++|++++.. |.+
T Consensus 15 ~~k~GTSG~R~~~~~~~fne~~i~a~~Qai~d~~~~~~~~~~L~vG~D~~~~se~a~~~~lev~aANgv~~iv~~~~g~~ 94 (524)
T COG0033 15 DVKFGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALEVLAANGVEVIVQGQGGFT 94 (524)
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 04787766667655676678899999999999886168777548788864015899999999997358459994689825
Q ss_pred CHHHHHHHHH----HHCCCE-EEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC----
Q ss_conf 8089999998----719925-8988654777520125640365456783578999999615664334454332221----
Q gi|254780544|r 80 PSPAVAMLTR----SLRADV-GVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHA---- 150 (448)
Q Consensus 80 ptP~l~~a~~----~~~~~g-GI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~---- 150 (448)
|||++|++++ +.++-+ ||++|+|||||++.|||+..++|+|.+.+.++.|+++............+.++..
T Consensus 95 ~TPAaSh~I~t~n~k~k~~~~GIvlT~SHNPP~D~GIKYN~~nGGPA~~~~T~aI~~ra~~~~k~~~~~v~r~~~~~~~~ 174 (524)
T COG0033 95 PTPAASHAILTHNGKYKALADGIVLTPSHNPPEDGGIKYNPPNGGPAPEKVTDAIEARANDLYKIGLLDVKRIGLDQAYG 174 (524)
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
T ss_conf 76377778986055456657807975798995447730579989989757899999999999875533744244434037
Q ss_pred ---CCCCCHHHHHHHHHHHCCCCHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--CC--CCCCCCCCCCCCC
Q ss_conf ---11354256668877632631021-1896699984466543333222123332222222--32--2235577442210
Q gi|254780544|r 151 ---KRVDGVHDRYIEHVKRTLPRDVT-LQGLRIVVDCANGASYKVAPEVFWELGADVVVIG--DK--PNGININLDCGST 222 (448)
Q Consensus 151 ---~~~~~~~~~Yi~~l~~~~~~~~~-~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~--~~--pd~~~~~~~~~~~ 222 (448)
..+.+....|++.|.+.|+.+.+ ...+++++|+|+|+++.+|.+|+++.......++ .. ||+...+|+|+-.
T Consensus 175 ~~~v~~~D~v~~Yv~~l~~i~D~daIr~~~~~l~~D~l~g~t~~Y~~~I~e~~~~~~t~v~~~~~p~~~F~~l~~D~ni~ 254 (524)
T COG0033 175 SLTVKIIDPVKDYVELLEEIFDFDAIRKAGLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQNVDPTPDFMGLDPDGNIR 254 (524)
T ss_pred CCEEEEECCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf 63246633067798877886269999998764050656676625699999986488032105766573125879998875
Q ss_pred HHH----HHHHHHCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHH
Q ss_conf 137----77642002-343036753155210001332237553311356777765532002234--33322113600444
Q gi|254780544|r 223 NVL----SLQRKVHE-VRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGN--GIVTTVMSNIGLER 295 (448)
Q Consensus 223 ~~~----~l~~~v~~-~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~--~vv~~v~ss~~i~~ 295 (448)
+.. .+...++. .++|||++.|||+||.++++....+++|+..+++++.|+-.....++. .|..+..||.++|+
T Consensus 255 ~~~ss~~~ma~l~~~~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~lAv~~~y~~~~~~~~~g~~~v~ktl~sS~~iDR 334 (524)
T COG0033 255 MDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRPYWGGIVAVGKTLVSSAAIDR 334 (524)
T ss_pred EECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 72374889997643220234212568876656024578754583279999999997677754563211103552788999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH--------CCCCHHHHHH
Q ss_conf 32001211111233211011111028970013466236530100014442332024667775--------5888899998
Q gi|254780544|r 296 FIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQ--------YDKPVSTICH 367 (448)
Q Consensus 296 ~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~--------~~~~l~~l~~ 367 (448)
+++++|.+++|+|||||||.+.+....+.||||||.| ..|.+.+|++|+.++.+-+|+- +++..++..+
T Consensus 335 V~~~lGr~lyEvPvG~K~F~~~l~~g~~~~~GEESaG---a~~lRek~g~Wa~~~~~~Ilall~aei~a~t~~~~~~~y~ 411 (524)
T COG0033 335 VVAKLGRGLYEVPVGFKWFVDGLDAGSFGFGGEESAG---ASFLREKGGVWATDKDGNILALLAAEITAVTGKIPQEHYA 411 (524)
T ss_pred HHHHHCCCEEECCCCCEEEECCCCCCCEEECCCCCCC---CCCEECCCCCEEEECHHHHHHHHHHHCHHHHCCCHHHHHH
T ss_conf 9998588538747744122031025632124655545---2010127971356100489998750033654147789999
Q ss_pred HHHH-CCC-EEEEEECCCCCCCCHHHHHHHHHH-------------------HHH---HC------CCCCEEEEECCCCC
Q ss_conf 6564-230-000000567651155899999876-------------------554---30------78865999677982
Q gi|254780544|r 368 CFEE-YPQ-FLRSVSVKDTSILNSSSIVQAIAD-------------------AES---EL------RGIDRLIVRASGTE 417 (448)
Q Consensus 368 ~l~~-~~~-~~~~~~~~~~~~~~~~~i~~~~~~-------------------~~~---~~------~~~~w~liRpSgTE 417 (448)
+|-+ |.. .+..++.+-... ....++.+.. ..+ .+ ...+|+..||||||
T Consensus 412 ~~~r~~~~~~Yervda~aa~~--~~a~L~~ls~~~v~~t~l~g~~~~a~~~~~~Gn~s~~~GLkV~~~ng~fa~R~SGT~ 489 (524)
T COG0033 412 ELGRNFGRPDYERVDAEAANA--QKARLRKLSPEMVSATTLAGDPITAYLTPAPGNGAAIGGLKVTTENGWFAARPSGTE 489 (524)
T ss_pred HHHHHHCCCCHHHHCCCHHHH--HHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCHHHCCCEEEEEECCEEEEECCCCC
T ss_conf 999885751087753710078--999998647033775525788640002579986010176699961758998337764
Q ss_pred CEEEEEEEC-CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 279999615-998999999999999987520
Q gi|254780544|r 418 SLIRIMAEG-DDLSRIKRIVDDLAKVIPMID 447 (448)
Q Consensus 418 p~iriy~Ea-~~~~~~~~l~~~~~~~i~~i~ 447 (448)
..+|||+|+ ...++.++.+.+++++|..+.
T Consensus 490 ~t~kiY~Esf~~~~h~~~~q~~~~~iV~~~~ 520 (524)
T COG0033 490 ATYKIYAESFEGDEHLKQIQKEAAEIVSEVL 520 (524)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 1332234650783778999999999999998
No 22
>KOG0625 consensus
Probab=100.00 E-value=0 Score=370.50 Aligned_cols=419 Identities=24% Similarity=0.321 Sum_probs=330.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CCCCH
Q ss_conf 33586015506877889999999999999997-237998389996687797999999999999789879996---26780
Q gi|254780544|r 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFR-GKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL---GPIPS 81 (448)
Q Consensus 6 FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~-~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~---g~~pt 81 (448)
=||+|+|..+.++ ..|+...+.-+|+-+.+. +..++.++|||.|.|+.+....+.++..-+++|+.-+.+ |..+|
T Consensus 18 pGTSGLRKkvkvF-~qpnY~eNfvQa~~~a~~~~~~kgatLVVGGDGRyy~~~a~~~I~~iaAaNGv~rlivGqnG~LST 96 (558)
T KOG0625 18 PGTSGLRKKVKVF-KQPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYYNKEAIQIIAKIAAANGVGRLIVGQNGILST 96 (558)
T ss_pred CCCCCHHHCCEEE-CCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 9850001115020-477448999999985366434568569974787421588999999998526851588635870365
Q ss_pred HHHHHHHHHH-CCCEEEEEEECCCCC---CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCC-
Q ss_conf 8999999871-992589886547775---2012564036545678357899999961566433445-----43322211-
Q gi|254780544|r 82 PAVAMLTRSL-RADVGVMISASHNPY---QDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSC-----YDSIGHAK- 151 (448)
Q Consensus 82 P~l~~a~~~~-~~~gGI~iTaSHNP~---~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~-----~~~~~~~~- 151 (448)
|+++..+++. .+.|||++||||||. .+-||||..++|.|.+...+++|-++-.......... ...+|..+
T Consensus 97 PAvS~iIRk~~~a~GgiILTASHNPGGP~~DfGIKfN~~NGGPAPesvTdkIy~itk~i~eYki~~~~~iDls~vG~~~~ 176 (558)
T KOG0625 97 PAVSCIIRKYIKAGGGIILTASHNPGGPEGDFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKDPKIDLSTVGKTSF 176 (558)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHCCCCC
T ss_conf 67888987632257628997246899998764248746789988478889999875112211431677777555143101
Q ss_pred ------CCCCHHHHHHHHHHHCCCCHHH------CCCCEEEEEECCCCCCCCCCCCC-CCCCCCCC-CCCCC--CCCCCC
Q ss_conf ------1354256668877632631021------18966999844665433332221-23332222-22232--223557
Q gi|254780544|r 152 ------RVDGVHDRYIEHVKRTLPRDVT------LQGLRIVVDCANGASYKVAPEVF-WELGADVV-VIGDK--PNGINI 215 (448)
Q Consensus 152 ------~~~~~~~~Yi~~l~~~~~~~~~------~~~lkvvvD~~~G~~~~~~~~il-~~lg~~~~-~i~~~--pd~~~~ 215 (448)
++-+..+.|++.+++.++.+.. .+++|+.+|+|||+++.+...|| ++||.... .+|+. ||+...
T Consensus 177 ~gpf~VeviDpv~~Yv~lmk~IFDF~~ik~lls~~~~~k~~~DamhGvtGpY~~~IfvdelGa~~~~~~n~~Pl~DFGG~ 256 (558)
T KOG0625 177 DGPFTVEVIDPVKDYVNLMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQNCVPLEDFGGG 256 (558)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHCCCEECCCCCCC
T ss_conf 48716998451999999999974789999986589883699751136653013567676509996885057056224799
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCH
Q ss_conf 7442210137776420023430367531552100013322375533113567777655320022---3433322113600
Q gi|254780544|r 216 NLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLR---GNGIVTTVMSNIG 292 (448)
Q Consensus 216 ~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~---~~~vv~~v~ss~~ 292 (448)
+|+|+-++...|.+.+...+.|||.|+||||||-.+.-.+|-+++|..-.|++|.+.-.-..++ -..+..+..+|.+
T Consensus 257 HPDPNLTYAk~LV~rv~~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na~~IPYF~~~Gv~GfARSmPTs~A 336 (558)
T KOG0625 257 HPDPNLTYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANAEAIPYFRKQGVKGFARSMPTSGA 336 (558)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHHHHHCCHHHHCCCCHHHHCCCCHHH
T ss_conf 98985056999999861478765432368876214640585254664129998730021655665374302104884057
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCC-HHHHHHH-HH
Q ss_conf 444320012111112332110111110289700134662365301000144423320246677755888-8999986-56
Q gi|254780544|r 293 LERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKP-VSTICHC-FE 370 (448)
Q Consensus 293 i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~-l~~l~~~-l~ 370 (448)
++++++++|.+++++|||+|++.+.|....+.++||||.|-- ++|.+++||+||.|.+|.+|+.++++ +.+++.+ +.
T Consensus 337 lDrVak~~gl~~yEvPTGWKfF~nLmDAgklsiCGEESFGTG-SdHIREKDGiWAvlaWlsIlA~~k~~~vedI~~~~W~ 415 (558)
T KOG0625 337 LDRVAKKLGLPVYEVPTGWKFFGNLMDAGKLSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHNKQNVVEDIVKEHWA 415 (558)
T ss_pred HHHHHHHHCCCEEECCCHHHHHHHHHCCCCEEECCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 899999709844766841888776643553004145345677-6322022533458999999976045519999999999
Q ss_pred HCCCE-EEEEECCCCCCCCHHHHHHHHHHHHH-----------------------------------------HCCCCCE
Q ss_conf 42300-00000567651155899999876554-----------------------------------------3078865
Q gi|254780544|r 371 EYPQF-LRSVSVKDTSILNSSSIVQAIADAES-----------------------------------------ELRGIDR 408 (448)
Q Consensus 371 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------------------------~~~~~~w 408 (448)
+|.+- +...+.++.......++++.+..... .+.+.++
T Consensus 416 ~YGR~fftRYDYE~~e~e~ank~m~~l~a~~~~~~vg~~~~~~~~~y~V~~ad~F~Y~DPvDGSvs~~QGlri~F~dGsR 495 (558)
T KOG0625 416 KYGRNFFTRYDYEEVEAEGANKMMEDLEALVSDSFVGKSFSPGDEVYKVAKADDFEYTDPVDGSVSKKQGLRIVFEDGSR 495 (558)
T ss_pred HHCCCCEEECCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCEEEEECCCCE
T ss_conf 85744243135310470668999999998715221242026788448999648712548878631014746999707968
Q ss_pred EEEECCCCCC---EEEEEEEC
Q ss_conf 9996779822---79999615
Q gi|254780544|r 409 LIVRASGTES---LIRIMAEG 426 (448)
Q Consensus 409 ~liRpSgTEp---~iriy~Ea 426 (448)
+.+|-|||-+ -+|+|+|+
T Consensus 496 ~VfRLSGTGSsGATiRLYie~ 516 (558)
T KOG0625 496 IVFRLSGTGSSGATIRLYIES 516 (558)
T ss_pred EEEEECCCCCCCCEEEEEEHH
T ss_conf 999954678888269976012
No 23
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00 E-value=0 Score=374.29 Aligned_cols=271 Identities=22% Similarity=0.335 Sum_probs=212.9
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCC-----------CCCCCCCCC-CCCCCCCCCCCCCHHHHHHH---HHCC-------
Q ss_conf 9669998446654333322212333-----------222222232-22355774422101377764---2002-------
Q gi|254780544|r 176 GLRIVVDCANGASYKVAPEVFWELG-----------ADVVVIGDK-PNGININLDCGSTNVLSLQR---KVHE------- 233 (448)
Q Consensus 176 ~lkvvvD~~~G~~~~~~~~il~~lg-----------~~~~~i~~~-pd~~~~~~~~~~~~~~~l~~---~v~~------- 233 (448)
+.++++||+||+++..+.++++.+. .++..+|+. +++...|.+|++++....+. .+..
T Consensus 246 ~~~l~vDcANGVGa~k~~~l~~~~~~~~~~~~~~~~~~i~v~n~~~~~~~~LN~~CGAD~vk~~q~P~~~~~~~~~~~~~ 325 (604)
T PTZ00302 246 PQKIVVDAANGVGALAIKSLLEAARQQSSFNALEEFFDVTVLHDNVQDETALNHKCGADYTQKHRSPSAAMKEWAAAYGK 325 (604)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCHHCCCCCCCCCCCCCCCCCC
T ss_conf 86389978763417889999998765301112233340699837999845224530887101035686322235444454
Q ss_pred ---------CCCCEEEEECCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHH---HHC--CCCCCCCCCCCCCCHH
Q ss_conf ---------3430367531552100013------3223755331135677776553---200--2234333221136004
Q gi|254780544|r 234 ---------VRADIGIALDGDGDRVIIV------DEKGAIVNGDQIMALIAREWMS---HSL--LRGNGIVTTVMSNIGL 293 (448)
Q Consensus 234 ---------~~ad~Gia~DgD~DR~~iv------d~~G~~i~~d~~~~lla~~ll~---~~~--~~~~~vv~~v~ss~~i 293 (448)
..++.+++|||||||++.+ |+++++|+||++.+|++.++.+ +.. ....+||.|..++...
T Consensus 326 ~~~~~~~v~~~~~~~~SfDGDADRlVy~~~d~~gd~~~~LlDGDkIa~L~A~~l~~~l~~~~~~~l~iGVVqTaYANgas 405 (604)
T PTZ00302 326 QHCNPPGVNPEEVHYYSLDGDADRVVAFFHDPKGDDKWVLLDGDRISILYAMLLRKWLGEEALKALDVGVVQTAYANGAS 405 (604)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCH
T ss_conf 33464334544444555578876689998548887403650541999999999999987601223567789987566245
Q ss_pred HHHHHCC-CCCCCCCCCCCCCHHHHHHCCCCEECCCCCCE--EEEEC-------------------------CCCCCCCC
Q ss_conf 4432001-21111123321101111102897001346623--65301-------------------------00014442
Q gi|254780544|r 294 ERFIAGL-GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGH--IILSD-------------------------YGSTGDGL 345 (448)
Q Consensus 294 ~~~a~~~-g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~--~~~~~-------------------------~~~~~Dgi 345 (448)
.+++++. +.++.+||||.||+..++++.++.+++|.||| ++|++ .+..+|||
T Consensus 406 T~yl~~~l~i~v~ct~TGVKhlh~~A~~~DiGvyFEaNGHGTVlfs~~~l~~~~~~~~~~~~~~L~~l~~LiNqtvGDAi 485 (604)
T PTZ00302 406 TDYLQRQLGLRVYTSATGVKNLHPIAHARDIGIYFEANGHGTVLLNEDVIASKVSSLGPEKAALLAALPRLLSQVCGDAI 485 (604)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHCCEEEEEEECCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999834983487068856399998746845898565856899667776433204766688999999998635634888
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCH----------HHHHHHHHHH----HHHCCCCCEEEE
Q ss_conf 33202466777558888999986564230000000567651155----------8999998765----543078865999
Q gi|254780544|r 346 VAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNS----------SSIVQAIADA----ESELRGIDRLIV 411 (448)
Q Consensus 346 ~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~----~~~~~~~~w~li 411 (448)
..+|++..+|+.+++++++|...|.++|+...++.++++..+.. ..+++++.+. +....+.+|.+|
T Consensus 486 sd~L~ve~iL~~~~~s~~~w~~~YtdlP~rl~kV~V~dr~~i~tt~aEr~~~~P~gLQ~~Id~~V~~~~~~~~~~GR~FV 565 (604)
T PTZ00302 486 ADLFACEVALLALNMTFQDWADLYTDLPSKQTKVTVANPRVITNTPDERRALTPPGLQEAIDAAVAAAALSSCEVARAFV 565 (604)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87899999999829998999998554576503788367870326556631048687899999999999875278733997
Q ss_pred ECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67798227999961599899999999999998752
Q gi|254780544|r 412 RASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMI 446 (448)
Q Consensus 412 RpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~i 446 (448)
|||||||++|||+||++++.+++|..++.++|++.
T Consensus 566 RPSGTEdvVRVYAEA~T~e~ad~La~~Va~~V~~~ 600 (604)
T PTZ00302 566 RPSGTEPVVRVYAEATDPAVCESLSAEVEKIVERY 600 (604)
T ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 54788757899970398899999999999999986
No 24
>pfam02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
Probab=100.00 E-value=2.1e-42 Score=281.23 Aligned_cols=137 Identities=42% Similarity=0.749 Sum_probs=130.6
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 52033586015506877889999999999999997237998389996687797999999999999789879996267808
Q gi|254780544|r 3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSP 82 (448)
Q Consensus 3 r~lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP 82 (448)
|++|||+||||++|..++||+++.++|.|++++++.+..+++|+||||+|.+|+++++++++||+++|++|+++|.+|||
T Consensus 1 ~~~Fgt~GiRG~~~~~~lt~~~~~~i~~a~~~~l~~~~~~~~I~ig~D~R~ss~~~~~~~~~gl~~~G~~v~~~g~~pTP 80 (138)
T pfam02878 1 RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARALAAGLAANGVEVILLGLLPTP 80 (138)
T ss_pred CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCH
T ss_conf 97148999612648998899999999999999998648999799997996779999999999704419789635887981
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 999999871992589886547775201256403654567835789999996156643
Q gi|254780544|r 83 AVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTS 139 (448)
Q Consensus 83 ~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~ 139 (448)
+++|+++++++++||||||||||++||||||++++|.+++++++++||+.+++..+.
T Consensus 81 ~~~~~v~~~~~~~Gi~ITASHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~ 137 (138)
T pfam02878 81 ALSFATRKLNADGGIMITASHNPPDYNGIKFYDSDGGPISPEVEEKIEAIIEKEDFY 137 (138)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999961697499998278997535699988998899889999999999764325
No 25
>KOG2537 consensus
Probab=100.00 E-value=1.9e-37 Score=250.58 Aligned_cols=353 Identities=22% Similarity=0.302 Sum_probs=251.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf 79983899966877979999999999997898799962678089999998719925898865477752012564036545
Q gi|254780544|r 40 KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGY 119 (448)
Q Consensus 40 ~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~ 119 (448)
....+|++|+|+|++|+.+.+++..|+-+....+.++|.++||.++|.++..+-. +-|. ++
T Consensus 122 t~~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~GvvtTPqLHy~v~~~n~~-~~~~-~~----------------- 182 (539)
T KOG2537 122 TVSAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDYGVVTTPQLHYMVRASNTK-GAYG-KG----------------- 182 (539)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCEEEECCHHHHHHHHHCCCC-CCCC-CC-----------------
T ss_conf 5221699803798752789988888888664285326887512665666433555-6556-67-----------------
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCH------HHCCCCEEEEEECCCCCCCCCC
Q ss_conf 6783578999999615664334454332221113542566688776326310------2118966999844665433332
Q gi|254780544|r 120 KVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRD------VTLQGLRIVVDCANGASYKVAP 193 (448)
Q Consensus 120 ~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~------~~~~~lkvvvD~~~G~~~~~~~ 193 (448)
.+.+ +.|++.+...+... ...+..|+.|||.||++..-+.
T Consensus 183 --~~t~--------------------------------~~Y~~~ls~af~~l~~~~~~~~~~~~k~~VD~ANGvG~~klk 228 (539)
T KOG2537 183 --KPTE--------------------------------EGYYSKLSKAFNELRNITQESGDEVSKLIVDCANGVGAPKLK 228 (539)
T ss_pred --CCCC--------------------------------CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf --7883--------------------------------207788988788765301246776623899885655628788
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC---CCC-CEEEEECCCCCCCCCC--CCCC--CCCCCCH
Q ss_conf 2212333--222222232223557744221013777642002---343-0367531552100013--3223--7553311
Q gi|254780544|r 194 EVFWELG--ADVVVIGDKPNGININLDCGSTNVLSLQRKVHE---VRA-DIGIALDGDGDRVIIV--DEKG--AIVNGDQ 263 (448)
Q Consensus 194 ~il~~lg--~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~---~~a-d~Gia~DgD~DR~~iv--d~~G--~~i~~d~ 263 (448)
++..-.. .++..+|+..|+.-.|..|++.....-++.-.. ..+ -....||||+||+..+ ++++ ++++||.
T Consensus 229 ~l~~i~~~~l~vEivNd~~dpelLN~~CGADFVkt~QkpP~~~~~~~~~~~caSfDGDADRlvyf~~~~~~~f~llDGDk 308 (539)
T KOG2537 229 ELLGIDSGLLNVEVVNDGIDPGLLNNGCGADFVKTKQKPPKGLSPIKANTRCASFDGDADRLVYFYIDDDSEFHLLDGDK 308 (539)
T ss_pred HHHCCCCCCCCEEEECCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEECCHH
T ss_conf 88515887674699718987545415656342210466988889888887503440356516999936984067624508
Q ss_pred HHHHHHHHHHHHHCC----CCCCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCE--EEEE
Q ss_conf 356777765532002----234333221136004443200-121111123321101111102897001346623--6530
Q gi|254780544|r 264 IMALIAREWMSHSLL----RGNGIVTTVMSNIGLERFIAG-LGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGH--IILS 336 (448)
Q Consensus 264 ~~~lla~~ll~~~~~----~~~~vv~~v~ss~~i~~~a~~-~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~--~~~~ 336 (448)
+..+++.|+-..... -..+||.|..++..--+++.. .+++++.+++|-|++..++.+.++.+.+|.+|| +.|+
T Consensus 309 istlla~~l~~ll~~~~~~l~~GvVqtaYaNgast~yl~~~l~~~vv~v~tGvKhlh~~A~efDiGiyFEaNGHGti~FS 388 (539)
T KOG2537 309 IATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVPTGVKHLHHAAAEFDIGIYFEANGHGTILFS 388 (539)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEEECCCCCCEEEH
T ss_conf 99999999999999851452000589886258507666653188657710254348888886161269850676212310
Q ss_pred C-------------------------------CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 1-------------------------------000144423320246677755888899998656423000000056765
Q gi|254780544|r 337 D-------------------------------YGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTS 385 (448)
Q Consensus 337 ~-------------------------------~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 385 (448)
+ ....+|++..++++..+|+.++++..++.+.|.+.|....++++.+..
T Consensus 389 ~~~~~~i~~~~~~~~~~~~~a~~~L~~~~~Linq~vGDAisd~llv~~il~~~~~s~~~w~e~y~dlPnrq~Kv~v~Dr~ 468 (539)
T KOG2537 389 EAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAISDMLAVEAILAHKGWSVQDWDELYRDLPNRQLKVKVPDRS 468 (539)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCE
T ss_conf 77787545565178752149999999987653212013320059999999863777878899835786634777750220
Q ss_pred CCCHHHHHHHHHH----------HHHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1155899999876----------554307886599967798227999961599899999999999998752
Q gi|254780544|r 386 ILNSSSIVQAIAD----------AESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMI 446 (448)
Q Consensus 386 ~~~~~~i~~~~~~----------~~~~~~~~~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~~i 446 (448)
........+++-. ..... ..++-+|||||||.++|||+|+.+++.+++|..++.++|..+
T Consensus 469 i~~ttdaer~~v~P~glQ~~Ida~vaky-~~gRaFvR~SGTEdvVRVYAEa~t~~~~d~l~~~v~~~v~~~ 538 (539)
T KOG2537 469 IIKTTDAERQLVKPVGLQDKIDALVAKY-KRGRSFVRPSGTEDVVRVYAEASTKEDADQLALEVAQLVLKL 538 (539)
T ss_pred EEECHHHHHHCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 3412055553279488999999988623-588517702676203788874685455899999999999852
No 26
>pfam02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III.
Probab=99.91 E-value=7.4e-25 Score=172.85 Aligned_cols=110 Identities=43% Similarity=0.699 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEEECCC
Q ss_conf 33113567777655320022343332211360044432001211111233211011111028970013466236530100
Q gi|254780544|r 260 NGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYG 339 (448)
Q Consensus 260 ~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~~~~~ 339 (448)
+||++++|+++++++++ ++ .||.|+.||.+++++++++|++++||+|||+||++.|++.++.||||+|||++|++|.
T Consensus 1 ~gD~l~~l~a~~ll~~~--~~-~vv~tv~ts~~~~~~~~~~g~~~~~t~vG~~~v~~~m~~~~~~~ggE~SG~~~~~~~~ 77 (111)
T pfam02880 1 DGDQILALLARYLLELK--PG-AVVKTVMSSLALDRVAEELGGELVRTKVGDKYVKEKMREEGAVLGGEESGHIIFLDFA 77 (111)
T ss_pred CHHHHHHHHHHHHHHHC--CC-CEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCEEEEECCC
T ss_conf 96899999999999878--99-5999442758999999987998999577528999886432650445067449984178
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 014442332024667775588889999865642
Q gi|254780544|r 340 STGDGLVAALQVLRYIKQYDKPVSTICHCFEEY 372 (448)
Q Consensus 340 ~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~ 372 (448)
+++||+++++++|+++++++++++++++++|++
T Consensus 78 ~~~Dgi~a~l~~le~l~~~~~~ls~l~~~l~~~ 110 (111)
T pfam02880 78 TTKDGIIAALLVLELLAETGKSLSELLEELPKR 110 (111)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 788789999999999998299999999985411
No 27
>pfam02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II.
Probab=99.85 E-value=7.5e-22 Score=154.27 Aligned_cols=99 Identities=36% Similarity=0.543 Sum_probs=88.9
Q ss_pred HHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCC
Q ss_conf 66688776326310-21189669998446654333322212333222222232223557744221---013777642002
Q gi|254780544|r 158 DRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS---TNVLSLQRKVHE 233 (448)
Q Consensus 158 ~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~---~~~~~l~~~v~~ 233 (448)
+.|++++++.++.+ ++.++|||++||+||+++.+++++|+++||+++.+|+.||+.|++..|+| +++..+.+.+++
T Consensus 1 ~~Y~~~l~~~i~~~~i~~~~lkv~vD~~~G~~~~~~~~ll~~lg~~~~~~~~~~d~~f~~~~p~P~~~~~l~~~~~~v~~ 80 (103)
T pfam02879 1 DAYIDRLASAFDLEALKKRGLKVVYDPLHGVGGEILPELLKRLGAEVVEENCEPDGDFPTKAPNPEEPEALELLIELVKE 80 (103)
T ss_pred CHHHHHHHHHCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 97899999867999971689889997788635899999999869989994365699879929399845479999998744
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 34303675315521000133223
Q gi|254780544|r 234 VRADIGIALDGDGDRVIIVDEKG 256 (448)
Q Consensus 234 ~~ad~Gia~DgD~DR~~ivd~~G 256 (448)
.++|+|+++||||||++++|++|
T Consensus 81 ~~ad~g~a~DgDaDR~~~vd~~G 103 (103)
T pfam02879 81 VGADLGIAFDGDADRLGVVDEKG 103 (103)
T ss_pred CCCEEEEEECCCCCEEEEECCCC
T ss_conf 39769999878876179967999
No 28
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.19 E-value=2.6e-11 Score=89.16 Aligned_cols=62 Identities=27% Similarity=0.457 Sum_probs=54.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 983899966877979999999999997898799962678089999998719925898865477
Q gi|254780544|r 42 HRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHN 104 (448)
Q Consensus 42 ~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~iTaSHN 104 (448)
...|+||||+|+||+++.+++.+||.+.|++|+|+|.+|||.++|+++..+.. |.+.+++|+
T Consensus 102 ~~~VvIGRDtR~Sg~~L~~av~~gl~s~g~~v~d~G~~tTP~l~y~V~~~n~~-~~~~~~~~~ 163 (513)
T cd03086 102 PANVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLVRAANTE-GAYGEPTEE 163 (513)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCHH
T ss_conf 65068621577667999999998887629758862322781487887761565-555665256
No 29
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=99.16 E-value=2.9e-11 Score=88.86 Aligned_cols=44 Identities=41% Similarity=0.606 Sum_probs=28.3
Q ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99258988654777520125640365456783578999999615
Q gi|254780544|r 92 RADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLED 135 (448)
Q Consensus 92 ~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~ 135 (448)
++.-||||||||||+++||+|+++++|..+..++|...+++.+.
T Consensus 72 g~~vGVMITASHNP~~DNGVKlvdp~G~mL~~~wE~~at~laNa 115 (604)
T PTZ00302 72 GCSVGCMITASHNPYTDNGLKLIDVDGGMLEVSWEKWCTRAANA 115 (604)
T ss_pred CCEEEEEEECCCCCCHHCCEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 97599999727899143887687799874138899999998478
No 30
>pfam00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain.
Probab=98.99 E-value=2.1e-09 Score=77.41 Aligned_cols=59 Identities=31% Similarity=0.504 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCC-EEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 1155899999876554307886-5999677982279999615998999999999999987
Q gi|254780544|r 386 ILNSSSIVQAIADAESELRGID-RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIP 444 (448)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~-w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~~i~ 444 (448)
+.....+...+.+....+.+.+ |++||||||||++|+|+|+.|.+.++++.+++.++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dG~~~~vR~SGTEp~lRv~vE~~~~~~~~~~~~~i~~~i~ 71 (71)
T pfam00408 12 VAALEALLKAFAEALKILFEDGRRLVVRPSGTEPVLRVYVEADDEAELEEIAAEVAELLK 71 (71)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 313999999999999996289758998438998469999961999999999999999859
No 31
>KOG2537 consensus
Probab=97.92 E-value=7.2e-06 Score=55.57 Aligned_cols=40 Identities=40% Similarity=0.667 Sum_probs=33.2
Q ss_pred HHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 7199258988654777520125640365456783578999
Q gi|254780544|r 90 SLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRI 129 (448)
Q Consensus 90 ~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~I 129 (448)
..+..-|+||||||||.++||+|+.++.|..+...++..-
T Consensus 56 l~gs~IGvMiTASHNp~~dNGvKivd~~g~ml~~~WE~~a 95 (539)
T KOG2537 56 LGGSTIGVMITASHNPVEDNGVKIVDPSGEMLAASWEEYA 95 (539)
T ss_pred HCCCEEEEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 5598169999853584330684045786223343446650
No 32
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=93.74 E-value=0.51 Score=25.61 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=8.3
Q ss_pred CCCEEEEEECCCCCCCCHH
Q ss_conf 5201256403654567835
Q gi|254780544|r 106 YQDNGIKLFGPDGYKVSTD 124 (448)
Q Consensus 106 ~~~nGiK~~~~~G~~i~~~ 124 (448)
-.||-+-+.+..+.-+++.
T Consensus 34 ttyNSYLI~~~k~aLID~~ 52 (388)
T COG0426 34 TTYNSYLIVGDKTALIDTV 52 (388)
T ss_pred CEEEEEEEECCCEEEECCC
T ss_conf 1445589967967998899
No 33
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=93.21 E-value=0.24 Score=27.63 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=42.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-----HHHHHH----HHHHHCCCEEEEEEEC
Q ss_conf 3899966877979999999999997898799962678-----089999----9987199258988654
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIP-----SPAVAM----LTRSLRADVGVMISAS 102 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~p-----tP~l~~----a~~~~~~~gGI~iTaS 102 (448)
+|+||.|. .+-.++..+..-|.+.|.+|.|+|.-. -|.... ++....++-||.|.+|
T Consensus 2 KI~IgsDH--aG~~LK~~i~~~L~~~G~eV~D~Gt~~~~svDYPd~a~~Va~~V~~~~~~~GIliCGT 67 (171)
T PRK12615 2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGT 67 (171)
T ss_pred EEEEEECC--HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 79999686--1599999999999988997897799998878826999999999976997646998178
No 34
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=92.65 E-value=0.74 Score=24.62 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=39.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-----HHHHHH----HHHHHCCCEEEEEEEC
Q ss_conf 3899966877979999999999997898799962678-----089999----9987199258988654
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIP-----SPAVAM----LTRSLRADVGVMISAS 102 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~p-----tP~l~~----a~~~~~~~gGI~iTaS 102 (448)
+|+||.|.. +-.++..+..-|.+.|.+|+|+|.-. -|-... ++....++-||.|.+|
T Consensus 2 KI~IgsDHa--G~eLKe~l~~~L~~~G~eV~D~G~~~~~~~DYPd~a~~va~~V~~~~~~~GIliCGT 67 (171)
T PRK08622 2 KIAIGCDHI--VTDEKMAVSDFLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGT 67 (171)
T ss_pred EEEEEECCH--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 799984860--699999999999978998997589998878878999999999976987638998078
No 35
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=87.72 E-value=2 Score=22.04 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=34.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH--HH----HHHHHHHHCCCEEEEEEEC
Q ss_conf 38999668779799999999999978987999626780--89----9999987199258988654
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPS--PA----VAMLTRSLRADVGVMISAS 102 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~pt--P~----l~~a~~~~~~~gGI~iTaS 102 (448)
+|+||.|.. +..+++.+..-|...|.+|.|++...+ |- +.-++....++-||.|.+|
T Consensus 2 kI~igsDHa--G~~lK~~i~~~L~~~g~~v~D~~~~~~DypD~a~~va~~V~~~~~~~GIliCGt 64 (141)
T PRK12613 2 AIILGADAH--GNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAY 64 (141)
T ss_pred EEEEEECCH--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 899995872--499999999999987998680798888886289999999975998659998688
No 36
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.69 E-value=1.7 Score=22.47 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=37.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHHCCCEEEEEEE
Q ss_conf 99966877979999999999997898799962678089-999998719925898865
Q gi|254780544|r 46 VIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPA-VAMLTRSLRADVGVMISA 101 (448)
Q Consensus 46 vVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~-l~~a~~~~~~~gGI~iTa 101 (448)
.+|.|.+-.+ ++.++..|..+|++|+++|.-.+|. +--++.+.+++ .|.+|+
T Consensus 6 k~g~DgHd~G---~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad-~IglSs 58 (122)
T cd02071 6 KPGLDGHDRG---AKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVD-VIGLSS 58 (122)
T ss_pred EECCCHHHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEEEC
T ss_conf 6478622877---9999999997897699679988999999999973998-999964
No 37
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=87.56 E-value=1.3 Score=23.03 Aligned_cols=55 Identities=27% Similarity=0.406 Sum_probs=42.7
Q ss_pred CCEE---EEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 8389---99668779799999999999978987999626-78089999998719925898865
Q gi|254780544|r 43 RRVV---IGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISA 101 (448)
Q Consensus 43 ~~vv---Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTa 101 (448)
+||| ||.|.+.-+ -+.+=..|..+|++|+++|. +|--..--|.-..+|+ +|.|++
T Consensus 2 ~T~VlGvIGsDcHAVG---~k~LDhaf~nagF~V~NlGv~~~~~efi~AAiet~AD-AilvSS 60 (134)
T TIGR01501 2 KTVVLGVIGSDCHAVG---NKVLDHAFRNAGFTVVNLGVLTAQEEFIKAAIETDAD-AILVSS 60 (134)
T ss_pred CEEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCC-EEEEEC
T ss_conf 7288870145402454---3788888732898898721316157888773228998-899830
No 38
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=87.09 E-value=2.2 Score=21.71 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=12.4
Q ss_pred HCCCCHHHHHHHHHH-CCCEEEE
Q ss_conf 558888999986564-2300000
Q gi|254780544|r 357 QYDKPVSTICHCFEE-YPQFLRS 378 (448)
Q Consensus 357 ~~~~~l~~l~~~l~~-~~~~~~~ 378 (448)
+.+-++.++.+.|++ |+++...
T Consensus 525 ra~aT~GEis~aL~~vfGry~a~ 547 (715)
T PRK09426 525 RARATVGEISDALEKVFGRHRAE 547 (715)
T ss_pred HHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 82586889999999972644488
No 39
>pfam02502 LacAB_rpiB Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).
Probab=86.40 E-value=2.4 Score=21.48 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=35.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-----HHHHHHHH----HHHCCCEEEEEEEC
Q ss_conf 3899966877979999999999997898799962678-----08999999----87199258988654
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIP-----SPAVAMLT----RSLRADVGVMISAS 102 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~p-----tP~l~~a~----~~~~~~gGI~iTaS 102 (448)
+|+||.|.. +..++..+..-|.+.|.+|+|+|..+ -|-....+ ....++-||.+..|
T Consensus 1 KI~i~sDha--G~~lK~~l~~~L~~~g~~v~D~G~~~~~~~dYpd~a~~va~~v~~~~~~~GIliCgs 66 (140)
T pfam02502 1 KIAIGSDHA--GFELKEAIKEYLKAKGYEVIDVGTYSGESVDYPDYAIKVAEAVASGEADRGILICGT 66 (140)
T ss_pred CEEEEECCC--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 989983872--799999999999987998998288989988748899999999845884168998478
No 40
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=86.10 E-value=2.5 Score=21.38 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=40.7
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 99668779799999999999978987999626-780899999987199258988654
Q gi|254780544|r 47 IGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISAS 102 (448)
Q Consensus 47 Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTaS 102 (448)
++-|.+..+ ++.++..|..+|.+|+++|. +|...+--++.+.+++ -|.++++
T Consensus 7 v~gD~H~iG---~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d-~I~lS~~ 59 (119)
T cd02067 7 VGGDGHDIG---KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDAD-AIGLSGL 59 (119)
T ss_pred CCCCHHHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEEECC
T ss_conf 398567789---9999999997899899899999999999999970999-9999622
No 41
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=82.62 E-value=3.5 Score=20.44 Aligned_cols=57 Identities=26% Similarity=0.524 Sum_probs=37.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CH-----HHHHH----HHHHHCCCEEEEEEEC
Q ss_conf 389996687797999999999999789879996267-80-----89999----9987199258988654
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPI-PS-----PAVAM----LTRSLRADVGVMISAS 102 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~-pt-----P~l~~----a~~~~~~~gGI~iTaS 102 (448)
+|+||.|.. +-.++..+..-|.+.|.+|.|+|.- .. |-... .+....++-||.|..|
T Consensus 2 kI~igsDHa--G~~lK~~l~~~L~~~g~~v~D~G~~~~~~~~DYpd~a~~va~~V~~~~~~~GIliCGt 68 (149)
T PRK05571 2 KIAIGSDHA--GFELKEEIIEHLEEKGHEVIDLGPDSYDASVDYPDFAIKVAEAVVAGEADRGILICGT 68 (149)
T ss_pred EEEEEECCH--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 799985872--7999999999999789989976999887788838999999999966996379998478
No 42
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=81.90 E-value=3.6 Score=20.36 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=47.1
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCCEEEE--------ECCCCCCCCCCCCCHHHHHHHHCCCCH
Q ss_conf 004443200121111123321101111102897001346623653--------010001444233202466777558888
Q gi|254780544|r 291 IGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIIL--------SDYGSTGDGLVAALQVLRYIKQYDKPV 362 (448)
Q Consensus 291 ~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~~g~E~sg~~~~--------~~~~~~~Dgi~a~l~~le~l~~~~~~l 362 (448)
....++|+.+|-++.+.. .|..- .=++..+|....|-++. +.|+|++.|-+++..++++.-.-..|+
T Consensus 159 AvARr~A~e~gK~YE~~N----~ivaH-lGGGISvaAH~~Gr~vDVNNALdGeGPFSPERsG~LP~~dlv~lCySGkyT~ 233 (353)
T TIGR02707 159 AVARRIAKELGKRYEEMN----LIVAH-LGGGISVAAHRKGRVVDVNNALDGEGPFSPERSGTLPLGDLVDLCYSGKYTK 233 (353)
T ss_pred HHHHHHHHHCCCCCCCCC----EEEEE-CCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH
T ss_conf 999999997289600445----48998-2887034145486179973477843293875456565888999872761038
Q ss_pred HHHHHHHH
Q ss_conf 99998656
Q gi|254780544|r 363 STICHCFE 370 (448)
Q Consensus 363 ~~l~~~l~ 370 (448)
+++.+.+-
T Consensus 234 ~E~kKkI~ 241 (353)
T TIGR02707 234 EEMKKKIV 241 (353)
T ss_pred HHHHHHHC
T ss_conf 89999852
No 43
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.99 E-value=4 Score=20.08 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=43.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 9838999668779799999999999978987999626-780899999987199258988654
Q gi|254780544|r 42 HRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISAS 102 (448)
Q Consensus 42 ~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTaS 102 (448)
.++|++|.=.--.-..=++.++.-|.+.|.+|+++|. +|.+.+--++++.+++ -|.+|+|
T Consensus 82 ~g~vv~~tv~Gd~H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~d-ivglS~~ 142 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPD-ILGLSAL 142 (201)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCC-EEEEECC
T ss_conf 865999627987738999999999987897799778999979999999972989-9999625
No 44
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism . Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology .; GO: 0005975 carbohydrate metabolic process.
Probab=79.46 E-value=4.5 Score=19.79 Aligned_cols=57 Identities=23% Similarity=0.447 Sum_probs=32.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-HHHH-----HH----HHHHHCCCEEEEEEECC
Q ss_conf 899966877979999999999997898799962678-0899-----99----99871992589886547
Q gi|254780544|r 45 VVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIP-SPAV-----AM----LTRSLRADVGVMISASH 103 (448)
Q Consensus 45 vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~p-tP~l-----~~----a~~~~~~~gGI~iTaSH 103 (448)
|+||.| +++-.|++-+.+=|-..+++|+|+|..+ ++.. .+ .+.....+.||.|.++-
T Consensus 1 i~igSD--H~G~~LK~~I~~hL~~~~~~~iD~G~~~~~~~~DYPdYA~~Va~~v~~~~~~~GILICGTG 67 (146)
T TIGR00689 1 IAIGSD--HAGLELKEKIIEHLEQKGLEVIDLGTLEYDESVDYPDYAKLVAQKVVEGEASLGILICGTG 67 (146)
T ss_pred CEEECC--CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 965026--6665789999998743684157506767889988747899999998628887324773687
No 45
>KOG0061 consensus
Probab=78.99 E-value=4.7 Score=19.68 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 88999999999999999723799838999668779799999999999978987999626780899999987199258988
Q gi|254780544|r 20 ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMI 99 (448)
Q Consensus 20 ~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~i 99 (448)
+..-.+.++-+.+-.+. ..++.||--..-|+|+.+..-=--.+++.| +++..|....-.-+|.. .|..+
T Consensus 201 LDS~sA~~vv~~Lk~lA----~~grtVi~tIHQPss~lf~lFD~l~lLs~G-~~vy~G~~~~~~~ff~~------~G~~~ 269 (613)
T KOG0061 201 LDSFSALQVVQLLKRLA----RSGRTVICTIHQPSSELFELFDKLLLLSEG-EVVYSGSPRELLEFFSS------LGFPC 269 (613)
T ss_pred CCHHHHHHHHHHHHHHH----HCCCEEEEEEECCCHHHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHH------CCCCC
T ss_conf 55576899999999998----679989999768728999999899998289-76786574047899986------49999
Q ss_pred EECCCCCCCE
Q ss_conf 6547775201
Q gi|254780544|r 100 SASHNPYQDN 109 (448)
Q Consensus 100 TaSHNP~~~n 109 (448)
-.-+||+||-
T Consensus 270 P~~~Npadf~ 279 (613)
T KOG0061 270 PELENPADFL 279 (613)
T ss_pred CCCCCCHHHH
T ss_conf 9988819999
No 46
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=78.87 E-value=4.7 Score=19.66 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=40.0
Q ss_pred CCCEEEEE---CCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 98389996---68779799999999999978987999626-78089999998719925898865
Q gi|254780544|r 42 HRRVVIGK---DTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISA 101 (448)
Q Consensus 42 ~~~vvVg~---D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTa 101 (448)
..+|++|. |.+..+ ++.++.-|.++|++|+|+|. +|.-.+--++++.+++ -|.+++
T Consensus 88 ~GkvvigTV~GD~HdiG---kniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~~~d-ivglSa 147 (213)
T cd02069 88 KGKIVLATVKGDVHDIG---KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKAD-IIGLSG 147 (213)
T ss_pred CCEEEEEEECCCCCCHH---HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC-EEEEEC
T ss_conf 88599997578634121---8999999997896688505899899999999974999-999832
No 47
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=78.43 E-value=4.9 Score=19.58 Aligned_cols=58 Identities=28% Similarity=0.520 Sum_probs=38.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCC--CEEEEECCCC-----HHHHHH----HHHHHCCCEEEEEEEC
Q ss_conf 8389996687797999999999999789--8799962678-----089999----9987199258988654
Q gi|254780544|r 43 RRVVIGKDTRLSGYMLENSLVAGFTAAG--MDAFILGPIP-----SPAVAM----LTRSLRADVGVMISAS 102 (448)
Q Consensus 43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G--~~V~~~g~~p-----tP~l~~----a~~~~~~~gGI~iTaS 102 (448)
.+|+||.|.. +-.++..+..-|.+.| .+|+|+|... -|-... ++....++-||.|.+|
T Consensus 3 mkI~igsDHa--G~~lK~~l~~~L~~~g~~~~V~D~G~~~~~~~DYPd~a~~va~~V~~~~~~~GIliCGt 71 (156)
T PTZ00215 3 RRVAIGCDHA--AFAIHEEIMDYVSAAGDEFKVMYMGPSSDESVDYPDYAAQVCEAVARGEADTGILVCGT 71 (156)
T ss_pred CEEEEEECCH--HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 6399982844--89999999999997699569896299988889827899999999974887169998079
No 48
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=76.45 E-value=5.6 Score=19.23 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCCCCEEE---EECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH-HHCCCEEEEEE
Q ss_conf 79983899---966877979999999999997898799962678089999998-71992589886
Q gi|254780544|r 40 KKHRRVVI---GKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTR-SLRADVGVMIS 100 (448)
Q Consensus 40 ~~~~~vvV---g~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~-~~~~~gGI~iT 100 (448)
+..++|+| |.|.+.-+ +..++..|.+.|++|++.|...||.-..... +.+.+ .|.|+
T Consensus 10 g~rprvlvak~GlDgHd~g---akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~-vIgvS 70 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRG---AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVD-VIGVS 70 (143)
T ss_pred CCCCEEEEECCCCCCCCCC---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEEE
T ss_conf 8986699953676544313---1999999985793798158758999999999864798-89997
No 49
>PRK05569 flavodoxin; Provisional
Probab=76.22 E-value=5.6 Score=19.19 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 8389996687797-999999999999789879996267808
Q gi|254780544|r 43 RRVVIGKDTRLSG-YMLENSLVAGFTAAGMDAFILGPIPSP 82 (448)
Q Consensus 43 ~~vvVg~D~R~~s-~~~~~~~~~gl~~~G~~V~~~g~~ptP 82 (448)
++|+|-||+-..+ +.++++++.|+.+.|++|-......++
T Consensus 2 ~Kv~IvY~S~~GnTe~mA~~IaeG~~~~G~ev~v~~~~~~~ 42 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK 42 (141)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 74999998996089999999999999769819999842399
No 50
>PRK00148 Maf-like protein; Reviewed
Probab=75.92 E-value=4.9 Score=19.57 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=69.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHH----HHC-CCCCCEEEEECCCCCCCCCCCCC--CC
Q ss_conf 654333322212333222222232223557-74422101377764----200-23430367531552100013322--37
Q gi|254780544|r 186 GASYKVAPEVFWELGADVVVIGDKPNGINI-NLDCGSTNVLSLQR----KVH-EVRADIGIALDGDGDRVIIVDEK--GA 257 (448)
Q Consensus 186 G~~~~~~~~il~~lg~~~~~i~~~pd~~~~-~~~~~~~~~~~l~~----~v~-~~~ad~Gia~DgD~DR~~ivd~~--G~ 257 (448)
++++..=.++|+.+|+++..+...-|.... ...| .+....+++ .+. ...-.+.++.|. ++..+++ |+
T Consensus 7 AS~Sp~R~~lL~~~g~~f~v~~~~idE~~~~~~~p-~~~v~~lA~~KA~~v~~~~~~~iVI~aDt----vv~~~g~i~gK 81 (195)
T PRK00148 7 ASASPARLKLLRLAGIPPLVVVSHVDEDAIAASLP-SELVQALALAKAEAVAEVAPDAVVLGCDS----MLLIDGRLLGK 81 (195)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCEEEEEEE----EEEECCEEECC
T ss_conf 57999999999977998499789989898877899-99999999999999998789977996435----99989998359
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHH-----HHHHCCC-----CEECC
Q ss_conf 5533113567777655320022343332211360044432001211111233211011-----1110289-----70013
Q gi|254780544|r 258 IVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIM-----EYMKNNG-----FNVGG 327 (448)
Q Consensus 258 ~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~-----~~~~~~~-----~~~g~ 327 (448)
.-+.++...+|.. +.- +.-.|++.++ ++..--...-..+..|.|=|+.+. +.+..+. -.++.
T Consensus 82 P~~~~eA~~~L~~--lsg---k~H~v~Tgv~---v~~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yv~~~~~~~kAG~y~i 153 (195)
T PRK00148 82 PHTPEEAIERWQQ--MRG---RTGELYTGHA---LIDLDQNVTFVEYERTEVHFAELSDEEIEAYVATGEPLDCAGAFTL 153 (195)
T ss_pred CCCHHHHHHHHHH--HCC---CCEEEEEEEE---EEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 9999999999998--669---9749998899---9988998899999989999946999999999960998673038765
Q ss_pred CCCCEEEEECCCCCCCCCC--CCCHHHHHHHHCCCCHHHH
Q ss_conf 4662365301000144423--3202466777558888999
Q gi|254780544|r 328 EQSGHIILSDYGSTGDGLV--AALQVLRYIKQYDKPVSTI 365 (448)
Q Consensus 328 E~sg~~~~~~~~~~~Dgi~--a~l~~le~l~~~~~~l~~l 365 (448)
|.-|..++.....+.+.++ ++..+.++|.+.|.+++++
T Consensus 154 eg~g~~~i~~I~G~~~nV~GLPl~~l~~~L~~~G~~~~~~ 193 (195)
T PRK00148 154 EGLGGWFVDKIEGDPSNVIGLSLPLLRRLLKRFGYSVSDL 193 (195)
T ss_pred CCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHC
T ss_conf 3585433654388830030888999999999859985545
No 51
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=75.45 E-value=5.9 Score=19.07 Aligned_cols=52 Identities=25% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCC
Q ss_conf 838999668779799999999999978987999626-7808999999871992
Q gi|254780544|r 43 RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRAD 94 (448)
Q Consensus 43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~ 94 (448)
.+|++|.=.--.-..=++.+..-|.++|++|+|+|. +|.-...=.+++++++
T Consensus 105 g~vVigtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d 157 (227)
T COG5012 105 GKVVIGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPD 157 (227)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 60799863562788789999999983795787438999879999999972875
No 52
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family; InterPro: IPR012741 This entry describes a subfamily of the B12 binding domain proteins that include corrinoid proteins specific to four different, mutually non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.; GO: 0031419 cobalamin binding, 0050897 cobalt ion binding, 0015948 methanogenesis.
Probab=75.43 E-value=3.1 Score=20.76 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=35.6
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 99668779799999999999978987999626-780899999987199258988654
Q gi|254780544|r 47 IGKDTRLSGYMLENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISAS 102 (448)
Q Consensus 47 Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTaS 102 (448)
+=-|-|--+ ++.+++=|.++|++|+|+|. +|.-.+==-+++.+.. -+||+.|
T Consensus 94 ~EGDvHdIG---k~iV~~mL~~~GF~v~DLGrDVp~~~vvE~v~~~~~~-kv~l~~s 146 (201)
T TIGR02370 94 AEGDVHDIG---KNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPE-KVMLTGS 146 (201)
T ss_pred EEECCCHHH---HHHHHHHHHCCCCEEEECCCCCCCCCCEEHHEEECCC-EEEEEEC
T ss_conf 620311101---3799998750696688737555552011012100786-6788631
No 53
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=74.89 E-value=6.1 Score=18.98 Aligned_cols=208 Identities=18% Similarity=0.217 Sum_probs=103.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEE--CC
Q ss_conf 799838999668779799999999999978987999-626780899999987199258988654777520125640--36
Q gi|254780544|r 40 KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFI-LGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLF--GP 116 (448)
Q Consensus 40 ~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~-~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~--~~ 116 (448)
...++|+||.-.-.-+..+...+.+.|...|++|-+ .|.-.|++++-|++.-+.+ +. +||+|--.+ .+
T Consensus 30 ~~~~~I~VgsK~~tE~~IL~~m~~~lle~~~~kv~~~~~lG~t~v~~~Al~~G~ID----iY-----pEYTGt~~~~~lk 100 (300)
T COG1732 30 SAAKTIVVGSKIFTEQYILGNILKQLLEKNGIKVEDKTGLGGTAVVRNALKSGDID----IY-----PEYTGTALFSFLK 100 (300)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCC----EE-----EEECCHHHHHHCC
T ss_conf 35788798347783889999999999986599145416888529999999759877----68-----5432314566345
Q ss_pred CCCCCCHHHHH---HHHHHHHCCCCCCCCCCCCCCCCCC-----CCCHHHHH----HHHHHHCCCCHHHCCCCEEEEEEC
Q ss_conf 54567835789---9999961566433445433222111-----35425666----887763263102118966999844
Q gi|254780544|r 117 DGYKVSTDIED---RIETLLEDDLTSYLSCYDSIGHAKR-----VDGVHDRY----IEHVKRTLPRDVTLQGLRIVVDCA 184 (448)
Q Consensus 117 ~G~~i~~~~~~---~Ie~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Y----i~~l~~~~~~~~~~~~lkvvvD~~ 184 (448)
.-.+...+.++ .+++.+.+... +...+..+.-.. ..+..+.| +.++..+. ..++...|..
T Consensus 101 ~~~~~~~dp~~~y~~vK~~~~k~~~--l~wl~p~~~nNTyA~av~~~~A~~~~i~TiSDLak~~------~~l~~g~~~e 172 (300)
T COG1732 101 KDPPASKDPKKVYETVKKLDAKQFK--LVWLKPAGFNNTYALAVRKDVAEKYNLETISDLAKHS------NQLKLGADSE 172 (300)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC--EEEECCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHH------HHCEECCCHH
T ss_conf 6764547989999999998886079--7896546877605899619889881981699999866------5346227842
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCC--CC--CCCCCCCCCCC
Q ss_conf 665433332221233322222223222355774422101377764200234303675315521--00--01332237553
Q gi|254780544|r 185 NGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGD--RV--IIVDEKGAIVN 260 (448)
Q Consensus 185 ~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~D--R~--~ivd~~G~~i~ 260 (448)
.=--..-++.+-+.+|.+. .|+ ....+++ -..+.+++...|++.++-.||- +. .+..++-+++.
T Consensus 173 F~~R~DG~~~l~k~Yg~~~-----~~~--~~~m~~g-----l~y~Al~~g~~d~~~~YsTDg~I~~~~L~VLkDDK~~fP 240 (300)
T COG1732 173 FAERADGLPALQKAYGFDF-----KPD--LRTMDGG-----LTYQALKNGTVDAADAYSTDGRIAAYGLKVLKDDKGFFP 240 (300)
T ss_pred HHCCCCCCHHHHHHHCCCC-----CCC--CEECCCH-----HHHHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCCCCC
T ss_conf 3136512289999848766-----887--4433815-----899998749977676314552212268579706876799
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 3113567777655320
Q gi|254780544|r 261 GDQIMALIAREWMSHS 276 (448)
Q Consensus 261 ~d~~~~lla~~ll~~~ 276 (448)
+=+...++-+.+++++
T Consensus 241 ~Y~~apvvre~vlk~~ 256 (300)
T COG1732 241 PYQAAPVVREEVLKKH 256 (300)
T ss_pred CCCCCCEECHHHHHHC
T ss_conf 8765640218777679
No 54
>PRK09414 glutamate dehydrogenase; Provisional
Probab=74.80 E-value=6.1 Score=18.96 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHH--HHHHHHHC-CCCCCEEEEECCCCCHH----HHHHHHHHHHHHC-CCE--E--EEECCCCHHHHHH
Q ss_conf 7889999999999--99999723-79983899966877979----9999999999978-987--9--9962678089999
Q gi|254780544|r 19 PITPNFMMRIGIA--VGYLFRGK-KKHRRVVIGKDTRLSGY----MLENSLVAGFTAA-GMD--A--FILGPIPSPAVAM 86 (448)
Q Consensus 19 ~~t~~~v~~i~~a--~~~~~~~~-~~~~~vvVg~D~R~~s~----~~~~~~~~gl~~~-G~~--V--~~~g~~ptP~l~~ 86 (448)
+.|.+.+..|+.- |-+.+.+. ..+.+==+-+|.+-.|. .|++.++.-|... |-+ | =|+|.-+ -.+.|
T Consensus 97 ~V~~~evk~La~~mt~KnAl~~lP~GGgKGGi~~DPk~~S~~El~R~~r~f~~eL~~~IGp~~DVPApDigt~~-rem~w 175 (446)
T PRK09414 97 SVNLSILKFLGFEQIFKNALTGLPMGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGG-REIGY 175 (446)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHH
T ss_conf 88999999999999999886077767766651328877999999999999999999860976698786578778-89999
Q ss_pred HHHHHC----CCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 998719----9258988654777520125640365456783578999999615664334454332221113542566688
Q gi|254780544|r 87 LTRSLR----ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIE 162 (448)
Q Consensus 87 a~~~~~----~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~ 162 (448)
...+++ ...|+ +|. -|.++.| . ..+.+ ....| .-.+.+
T Consensus 176 m~d~Y~~i~~~~~gv-~TG--Kp~~~GG--------s-~gR~e------------------ATG~G--------v~y~~~ 217 (446)
T PRK09414 176 MFGQYKRLTNRFEGV-LTG--KGLSFGG--------S-LIRPE------------------ATGYG--------LVYFAE 217 (446)
T ss_pred HHHHHHHHCCCCCCE-ECC--CCCCCCC--------C-CCCCC------------------CHHHH--------HHHHHH
T ss_conf 999999854987735-689--9721068--------8-68765------------------32289--------999999
Q ss_pred HHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77632631021189669998446654333322212333222222232
Q gi|254780544|r 163 HVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDK 209 (448)
Q Consensus 163 ~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~ 209 (448)
.+.+.... .+++-+++|.. .|-.+.++.+.|.++|+.++.+.+.
T Consensus 218 e~l~~~g~--~l~gk~v~IqG-fGNVg~~aA~~l~e~GakvVavSDs 261 (446)
T PRK09414 218 EMLKARGD--SFEGKTVVVSG-SGNVAIYAIEKAMELGAKVVTCSDS 261 (446)
T ss_pred HHHHHCCC--CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99997499--95788799977-7779999999999769979999837
No 55
>TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785 Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt.
Probab=73.71 E-value=4.2 Score=20.00 Aligned_cols=57 Identities=19% Similarity=0.429 Sum_probs=43.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH---------HHHHHHCCCEEEEEEEC
Q ss_conf 389996687797999999999999789879996267808999---------99987199258988654
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVA---------MLTRSLRADVGVMISAS 102 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~---------~a~~~~~~~gGI~iTaS 102 (448)
+|.+|+|. .+-.+++.+..=|...|++|+|.|..|+--.. -++.....+.||.|.+.
T Consensus 1 kiaiGsDH--aGf~Lke~ik~fL~~~g~kvid~GT~~~ertdYP~YAk~V~~av~~g~~~~GILiCgT 66 (143)
T TIGR01120 1 KIAIGSDH--AGFILKEKIKEFLEDKGFKVIDVGTLASERTDYPDYAKEVVRAVLEGKAERGILICGT 66 (143)
T ss_pred CEEEECCC--CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 93550586--5623478899986139857987537886763660689999999744876676688505
No 56
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=72.66 E-value=6.9 Score=18.64 Aligned_cols=57 Identities=25% Similarity=0.500 Sum_probs=37.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CH-----HHHHHH----HHHHCCCEEEEEEEC
Q ss_conf 389996687797999999999999789879996267-80-----899999----987199258988654
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPI-PS-----PAVAML----TRSLRADVGVMISAS 102 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~-pt-----P~l~~a----~~~~~~~gGI~iTaS 102 (448)
+|.||+|.- +..++..+..=|.+.|.+|+|+|.. ++ |-.... +..-.++.||.|.+.
T Consensus 2 kIaig~Dha--g~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGT 68 (151)
T COG0698 2 KIAIGSDHA--GYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGT 68 (151)
T ss_pred CEEEECCCC--CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 279974753--3779999999999789779963664787775508999999999974787746998157
No 57
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=66.90 E-value=9.2 Score=17.88 Aligned_cols=127 Identities=21% Similarity=0.339 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHH-
Q ss_conf 8779799999999999978987999626780899999987199258988654777520125640365456783578999-
Q gi|254780544|r 51 TRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRI- 129 (448)
Q Consensus 51 ~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~I- 129 (448)
.|..+..+...+.+-....|..|+.+|-.| .++.-+..++...-|+.|.++|++ .+++++++.|
T Consensus 89 eRV~G~DL~~~Ll~~a~~~g~~vfllG~~p-~v~~~a~~~l~~~y~l~IvG~~~G--------------yf~~~e~~~ii 153 (246)
T PRK03692 89 SRVAGADLWEALMARAGKEGTPVFLVGGKP-EVLAQTEAKLRAQWNVNIVGSQDG--------------YFTPEQRQALF 153 (246)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECCCH-HHHHHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHHHH
T ss_conf 752719999999998887498379842888-999999999998749869984699--------------99837779999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9996156643344543322211135425666887763263102118966999844665433332221233322
Q gi|254780544|r 130 ETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGAD 202 (448)
Q Consensus 130 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~ 202 (448)
+++-+....-.. =.+|.. -.+.++..........+.. +.--.+|..-|. ..-+|+++.++|.+
T Consensus 154 ~~I~~s~pdil~---VglG~P-----kQE~wi~~~~~~l~~~v~i-gVGgsfD~~aG~-v~RAP~w~q~lgLE 216 (246)
T PRK03692 154 ERIHASGAKIVT---VAMGSP-----KQEIFMRDCRLVHPDALYM-GVGGTYDVFTGH-VKRAPKIWQNLGLE 216 (246)
T ss_pred HHHHHCCCCEEE---EECCCC-----HHHHHHHHHHHHCCCCEEE-ECCEEEEEECCC-CCCCCHHHHHHCCH
T ss_conf 999856999999---956981-----8999999978768987899-705688750588-06384999985839
No 58
>PRK05568 flavodoxin; Provisional
Probab=65.37 E-value=9.8 Score=17.70 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 8389996687797-999999999999789879996267808
Q gi|254780544|r 43 RRVVIGKDTRLSG-YMLENSLVAGFTAAGMDAFILGPIPSP 82 (448)
Q Consensus 43 ~~vvVg~D~R~~s-~~~~~~~~~gl~~~G~~V~~~g~~ptP 82 (448)
++|+|-|++...+ +.++++++.|+.+.|++|......-++
T Consensus 2 ~kv~IvY~S~~GnTe~mA~~Iaegl~~~Gv~V~~~~~~~~~ 42 (142)
T PRK05568 2 KKLNIIYWSGTGNTEAMANLIAEGAKENGLEVKLLNVSEAS 42 (142)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 72999998998549999999999998669839999800499
No 59
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=65.11 E-value=10 Score=17.67 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=31.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC---CCHHHHHHH----HHHHCCCEEEEEEEC
Q ss_conf 38999668779799999999999978987999626---780899999----987199258988654
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGP---IPSPAVAML----TRSLRADVGVMISAS 102 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~---~ptP~l~~a----~~~~~~~gGI~iTaS 102 (448)
+|+||.|.. +-.++..+..-|...|.+|.|+|. +--|-..+. +....++-||.|.+|
T Consensus 2 kI~IgsDHa--G~~lK~~l~~~L~~~g~ev~D~g~~~~~DYpd~a~~va~~V~~~~~~~GIliCGt 65 (142)
T PRK08621 2 AIIIGADKA--GFELKEVIKDYLEDNKYEVVDVTEEEGEDFVDSTLAVAKEVNKQEDNLGIVIDAY 65 (142)
T ss_pred EEEEEECCH--HHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 799985873--6999999999999789987979999778816899999999976987555898788
No 60
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=64.79 E-value=10 Score=17.63 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=40.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 838999668779799999999999978987999626780899999987199
Q gi|254780544|r 43 RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRA 93 (448)
Q Consensus 43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~ 93 (448)
++|+||.-.=..+..+++.....|-..|++|-....-.+++++-++..-+.
T Consensus 1 ktI~ig~~~w~e~~i~a~i~~~~Le~~G~~V~~~~~~~~~~~~~al~~G~i 51 (256)
T pfam04069 1 KTIVIGSKNWTEQEILANIAAQLLEALGYVVELVGLGSTAVLFAALASGDI 51 (256)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCC
T ss_conf 929992688628999999999999976981698547870899999976997
No 61
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=61.15 E-value=5.4 Score=19.33 Aligned_cols=39 Identities=28% Similarity=0.511 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 1233322222223222355774422101377764200234303675315
Q gi|254780544|r 196 FWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDG 244 (448)
Q Consensus 196 l~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~Dg 244 (448)
|-+.|.+.+++|.| .+.++.++.+.+|+.++..|+++.|
T Consensus 77 Fa~aGA~~I~vH~E----------a~~h~~R~l~~Ik~~G~~AG~v~NP 115 (216)
T TIGR01163 77 FAEAGADIITVHAE----------ATEHIHRLLQLIKELGAKAGIVLNP 115 (216)
T ss_pred HHHHCCCEEEEECC----------CCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 99708998998437----------7626799999999718970688679
No 62
>TIGR00863 P2X cation transporter protein; InterPro: IPR001429 P2X purinoceptors are cell membrane ion channels, gated by adenosine 5'-triphosphate (ATP) and other nucleotides; they have been found to be widely expressed on mammalian cells, and, by means of their functional properties, can be differentiated into three sub-groups. The first group is almost equally well activated by ATP and its analogue alphabetamethyleneATP, whereas, the second group is not activated by the latter compound. A third type of receptor (also called P2Z) is distinguished by the fact that repeated or prolonged agonist application leads to the opening of much larger pores, allowing large molecules to traverse the cell membrane. This increased permeability rapidly leads to cell death, and lysis. Molecular cloning studies have identified seven P2X receptor subtypes, designated P2X1-P2X7. These receptors are proteins that share 35-48% amino acid identity, and possess two putative transmembrane (TM) domains, separated by a long (~270 residues) intervening sequence, which is thought to form an extracellular loop. Around 1/4 of the residues within the loop are invariant between the cloned subtypes, including 10 characteristic cysteines. Studies of the functional properties of heterologously expressed P2X receptors, together with the examination of their distribution in native tissues, suggests they likely occur as both homo- and heteromultimers in vivo , . This entry represents all P2X purinoreceptor subtypes.; GO: 0004872 receptor activity, 0005216 ion channel activity, 0005524 ATP binding, 0006811 ion transport, 0016020 membrane.
Probab=61.01 E-value=7.2 Score=18.55 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=6.1
Q ss_pred CCCCCEEEEECCC
Q ss_conf 7998389996687
Q gi|254780544|r 40 KKHRRVVIGKDTR 52 (448)
Q Consensus 40 ~~~~~vvVg~D~R 52 (448)
...+++||-|--+
T Consensus 16 Y~T~k~V~~rn~~ 28 (377)
T TIGR00863 16 YKTPKYVLVRNKK 28 (377)
T ss_pred CCCCEEEEEEECE
T ss_conf 4663189997032
No 63
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=60.65 E-value=12 Score=17.16 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=37.1
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH-HHHHHHHCCCEEEEEEE
Q ss_conf 99668779799999999999978987999626780899-99998719925898865
Q gi|254780544|r 47 IGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV-AMLTRSLRADVGVMISA 101 (448)
Q Consensus 47 Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l-~~a~~~~~~~gGI~iTa 101 (448)
+|.|.+.-+ +..++..|..+|++|+++|...||.- --++.+.+++ .|.+++
T Consensus 7 vg~D~Hd~G---~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad-~i~vSs 58 (128)
T cd02072 7 IGSDCHAVG---NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDAD-AILVSS 58 (128)
T ss_pred ECCCHHHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEECC
T ss_conf 287653788---9999999997897298479889999999999873999-999823
No 64
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=56.50 E-value=14 Score=16.73 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=38.5
Q ss_pred CCCEE---EEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH-HHHHHHHCCCEEEEEEE
Q ss_conf 98389---99668779799999999999978987999626780899-99998719925898865
Q gi|254780544|r 42 HRRVV---IGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAV-AMLTRSLRADVGVMISA 101 (448)
Q Consensus 42 ~~~vv---Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l-~~a~~~~~~~gGI~iTa 101 (448)
.++|+ +|-|.+.-+ +..++..|..+|++|+++|...||.- --++.+.+++ .|-+++
T Consensus 3 r~~vvi~~~g~D~Hd~G---~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad-~igiSs 62 (137)
T PRK02261 3 KPTVVLGVIGADCHAVG---NKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDAD-AILVSS 62 (137)
T ss_pred CCEEEEEEECCCHHHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC-EEEECC
T ss_conf 88799982188611788---9999999997897498468879999999999873999-999711
No 65
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=56.10 E-value=14 Score=16.69 Aligned_cols=133 Identities=11% Similarity=0.125 Sum_probs=63.8
Q ss_pred EEEEEC------CCCHHHHHHH--HHHHCCCEEEEEEE----CCCCCC----C---------EEEEEECCCCCCCCHHHH
Q ss_conf 799962------6780899999--98719925898865----477752----0---------125640365456783578
Q gi|254780544|r 72 DAFILG------PIPSPAVAML--TRSLRADVGVMISA----SHNPYQ----D---------NGIKLFGPDGYKVSTDIE 126 (448)
Q Consensus 72 ~V~~~g------~~ptP~l~~a--~~~~~~~gGI~iTa----SHNP~~----~---------nGiK~~~~~G~~i~~~~~ 126 (448)
+.+++| ..+||.+||- +..+-..-+|.+|. +|--.+ + --.++|..-=.|..+-..
T Consensus 128 d~LdLG~GktL~Fi~tPmlHWPDsM~TY~~edkILFS~DaFG~H~~~~~~fddevd~~~~~~ea~rYYanIl~Pf~~~V~ 207 (479)
T PRK05452 128 DTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVT 207 (479)
T ss_pred CEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85726998468996189877887326886267568612555321227544433245687899999999998764079999
Q ss_pred HHHHHHHHCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCC-----C
Q ss_conf 9999996156-643344543322211135425666887763263102118966999844665433332221233-----3
Q gi|254780544|r 127 DRIETLLEDD-LTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWEL-----G 200 (448)
Q Consensus 127 ~~Ie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~l-----g 200 (448)
++|+++..-. ...........-.......+.+.|.++-... .....-|++|+|+|.+...+..|.+.+ |
T Consensus 208 ~~l~kl~~l~L~I~~IaPsHGpI~R~~~~~ii~~Y~~Wa~~~-----~~~kv~IvY~SmyGnT~~MA~aIA~Gl~~~~~g 282 (479)
T PRK05452 208 PKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADY-----QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPR 282 (479)
T ss_pred HHHHHHHHCCCCHHEEECCCCCEEECCHHHHHHHHHHHHHCC-----CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999999737998424875788233179999999999997447-----778289999665030999999999999851799
Q ss_pred CCCCCCCCC
Q ss_conf 222222232
Q gi|254780544|r 201 ADVVVIGDK 209 (448)
Q Consensus 201 ~~~~~i~~~ 209 (448)
+++..+|..
T Consensus 283 v~V~~~n~~ 291 (479)
T PRK05452 283 VAVKIFNVA 291 (479)
T ss_pred CEEEEEECC
T ss_conf 449999746
No 66
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=54.19 E-value=15 Score=16.50 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=17.9
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96699984466543333222123332222
Q gi|254780544|r 176 GLRIVVDCANGASYKVAPEVFWELGADVV 204 (448)
Q Consensus 176 ~lkvvvD~~~G~~~~~~~~il~~lg~~~~ 204 (448)
+.|+++-..||....-..++|.+-|+.++
T Consensus 146 ~ck~IvEgANgP~T~eAd~iL~~kGI~vi 174 (254)
T cd05313 146 GCKYVAEGANMPCTAEAIEVFRQAGVLFA 174 (254)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCEEE
T ss_conf 98299865889998789999998898896
No 67
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=52.95 E-value=16 Score=16.37 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=17.3
Q ss_pred HHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCC
Q ss_conf 566688776326310211896699984466543
Q gi|254780544|r 157 HDRYIEHVKRTLPRDVTLQGLRIVVDCANGASY 189 (448)
Q Consensus 157 ~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~ 189 (448)
.+.|++.+.+.++........|+++|-+.|+++
T Consensus 98 a~~Yid~i~~~ip~~~~~~~vRt~LDvGCGVAS 130 (506)
T pfam03141 98 ADAYIDFLAQVIPLIAWGGRVRTALDVGCGVAS 130 (506)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEC
T ss_conf 999999999856755579856899976887210
No 68
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=52.65 E-value=16 Score=16.34 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC---CCCCHH---HHH--
Q ss_conf 100013322375533113567777655320022343332211360044432001211111233---211011---111--
Q gi|254780544|r 247 DRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEV---GDRYIM---EYM-- 318 (448)
Q Consensus 247 DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~v---G~k~i~---~~~-- 318 (448)
+++.+.+..|+.+..|.+.. | -|..-....=|+..--++|++.|.++.++.- +|..=. +.+
T Consensus 142 ~~f~l~t~~g~~i~~d~lil--A---------tGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~~~l~g 210 (408)
T COG2081 142 SGFRLDTSSGETVKCDSLIL--A---------TGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFLERLAG 210 (408)
T ss_pred CEEEEECCCCCEEECCEEEE--E---------CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 55899859998898048999--2---------288677878998402689997598405686655772478789987437
Q ss_pred ---HCCCCEEC----CCCCCEEEEECCCCCCCCCCCCCHHHH
Q ss_conf ---02897001----346623653010001444233202466
Q gi|254780544|r 319 ---KNNGFNVG----GEQSGHIILSDYGSTGDGLVAALQVLR 353 (448)
Q Consensus 319 ---~~~~~~~g----~E~sg~~~~~~~~~~~Dgi~a~l~~le 353 (448)
+.-...+. ....|-+.|.+|+..+-+++.+-....
T Consensus 211 ls~~~v~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~ 252 (408)
T COG2081 211 LSLKSVPLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWR 252 (408)
T ss_pred CCCCCEEEEEECCCCCEEECCEEEEECCCCHHHHHHHHHHHH
T ss_conf 865653789844888133045679805776799999999998
No 69
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=52.57 E-value=4.8 Score=19.59 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=27.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 79983899966877979999999999997898799962
Q gi|254780544|r 40 KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILG 77 (448)
Q Consensus 40 ~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g 77 (448)
+.+..++|+-=.-.=|..--..+|.-+.+.|++++--|
T Consensus 22 G~G~~~~iAGPCsvEs~eq~~~~A~~vk~~Ga~~LRGG 59 (262)
T TIGR01361 22 GEGSPIVIAGPCSVESEEQIVETARFVKEAGAKILRGG 59 (262)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 38478998648774887999999999986674043066
No 70
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=52.15 E-value=17 Score=16.29 Aligned_cols=88 Identities=11% Similarity=0.219 Sum_probs=50.6
Q ss_pred HHHH-HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE-ECC--C---CHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 9999-9723799838999668779799999999999978987999-626--7---8089999998719925898865477
Q gi|254780544|r 32 VGYL-FRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFI-LGP--I---PSPAVAMLTRSLRADVGVMISASHN 104 (448)
Q Consensus 32 ~~~~-~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~-~g~--~---ptP~l~~a~~~~~~~gGI~iTaSHN 104 (448)
+|.| ++.+.+.+..+|+||.+..+ .-.-+..-=...|++|+. .+. - |.-..+-|+.+-+..
T Consensus 122 LA~~ll~kk~~~kvLLva~D~yRPA--A~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~---------- 189 (439)
T TIGR00959 122 LALYLLKKKEGKKVLLVACDLYRPA--AIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQALEEAKEN---------- 189 (439)
T ss_pred HHHHHHHHHCCCCEEEEEHHCCCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC----------
T ss_conf 9999999863897034032103478--9999999767528871100478889887789999999999974----------
Q ss_pred CCCCEEEEEECCCCC-CCCHHHHHHHHHHHH
Q ss_conf 752012564036545-678357899999961
Q gi|254780544|r 105 PYQDNGIKLFGPDGY-KVSTDIEDRIETLLE 134 (448)
Q Consensus 105 P~~~nGiK~~~~~G~-~i~~~~~~~Ie~~~~ 134 (448)
-|-+-++|--|. +|+....+++..+-+
T Consensus 190 ---~~D~vI~DTAGRL~ID~~LM~EL~~iK~ 217 (439)
T TIGR00959 190 ---GFDVVIVDTAGRLQIDEELMEELAEIKE 217 (439)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf ---8978997267512555999999999988
No 71
>PRK10834 hypothetical protein; Provisional
Probab=52.10 E-value=17 Score=16.29 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=69.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE----EEE-ECCC
Q ss_conf 03358601550687788999999999999999723799838999668779799999999999978987----999-6267
Q gi|254780544|r 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMD----AFI-LGPI 79 (448)
Q Consensus 5 lFGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~----V~~-~g~~ 79 (448)
.+||+.+.. ....++.+..|+-.|+.-|-+ ++-+.++|+.|++..+-.=-.+.-.-|.+.|+. +.| .|.-
T Consensus 50 VLGtak~~~---~G~pn~~~~~RldaA~~LY~~--GKv~~iLvSGDn~~~~YnEp~~Mk~~Li~~GVP~e~I~~D~AGfr 124 (239)
T PRK10834 50 VLGTAKYYR---TGVINQYYRYRIQGAINAYNS--GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPADIVLDYAGFR 124 (239)
T ss_pred EECCCCCCC---CCCCCHHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHEECCCCCCC
T ss_conf 945764678---998198999999999999986--997489866899988898289999999985998999505667654
Q ss_pred CHHHHHHHHHHHCCCEEEEEEE-CCCC
Q ss_conf 8089999998719925898865-4777
Q gi|254780544|r 80 PSPAVAMLTRSLRADVGVMISA-SHNP 105 (448)
Q Consensus 80 ptP~l~~a~~~~~~~gGI~iTa-SHNP 105 (448)
+.-.+.-|-+-++.+--++||. -|||
T Consensus 125 T~DS~vRAk~VF~~~~~iIVTQ~FH~~ 151 (239)
T PRK10834 125 TLDSIVRTRKVFDTNDFIIITQRFHCE 151 (239)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 899999999980998289994601389
No 72
>PRK02676 consensus
Probab=51.71 E-value=17 Score=16.25 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 654333322212333222222232223
Q gi|254780544|r 186 GASYKVAPEVFWELGADVVVIGDKPNG 212 (448)
Q Consensus 186 G~~~~~~~~il~~lg~~~~~i~~~pd~ 212 (448)
++++..=.++|+++|.+...+...-|.
T Consensus 8 AS~SprR~~lL~~~g~~f~v~~~~idE 34 (196)
T PRK02676 8 ASASPARRRLLQTVGIDPIVQPSHFDE 34 (196)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 479999999999779983997899998
No 73
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=51.43 E-value=17 Score=16.22 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCC---E-EEE-E--CCC-CHHHHHHHHHHHCC
Q ss_conf 83899966877979999999999997898---7-999-6--267-80899999987199
Q gi|254780544|r 43 RRVVIGKDTRLSGYMLENSLVAGFTAAGM---D-AFI-L--GPI-PSPAVAMLTRSLRA 93 (448)
Q Consensus 43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~---~-V~~-~--g~~-ptP~l~~a~~~~~~ 93 (448)
.+.++++...- =...+...+.++.++|+ + |.. + |.- .-..++++...+++
T Consensus 100 ~P~~v~~T~~D-~~~~~~~~aR~~~~~G~~~gD~v~v~~~ygl~~Gg~~~~~g~~~lGa 157 (445)
T TIGR03335 100 TPKSFFLTWDD-WKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGM 157 (445)
T ss_pred CCEEECCCHHH-HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 82076028899-99999999999987799988789993166776406899999998499
No 74
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=50.36 E-value=7.1 Score=18.57 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.7
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCC
Q ss_conf 8987999626-7808999999871992
Q gi|254780544|r 69 AGMDAFILGP-IPSPAVAMLTRSLRAD 94 (448)
Q Consensus 69 ~G~~V~~~g~-~ptP~l~~a~~~~~~~ 94 (448)
.|+.|++++. ++-|........+||+
T Consensus 13 ~GirVld~~~~~agP~~~~~LadlGAe 39 (405)
T PRK03525 13 AGLRVVFSGIEIAGPFAGQMFAEWGAE 39 (405)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf 998899927720899999999984993
No 75
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=49.63 E-value=18 Score=16.05 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=48.0
Q ss_pred CCCCCEEEE-----EC-----CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE-EECCCCCHHHHHHHHHHHHH---HCCC
Q ss_conf 335860155-----06-----8778899999999999999972379983899-96687797999999999999---7898
Q gi|254780544|r 6 FGTDGIRGK-----SN-----TFPITPNFMMRIGIAVGYLFRGKKKHRRVVI-GKDTRLSGYMLENSLVAGFT---AAGM 71 (448)
Q Consensus 6 FGt~GiRG~-----~~-----~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvV-g~D~R~~s~~~~~~~~~gl~---~~G~ 71 (448)
|+..|+||+ .+ .+|++|+-+..|-.=+. .++. .++-| -.|. ..++ ..-+
T Consensus 59 lsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~----~N~~-~~~~v~~~dA------------n~lm~~~~~~f 121 (376)
T PRK04338 59 LSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLE----LNGL-ENAEVFNEDA------------NVLLHENERKF 121 (376)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH----HHCC-CCEEEECCCH------------HHHHHHCCCCC
T ss_conf 67654999999872799879995699999999999999----8299-8269813248------------99998378758
Q ss_pred EEEEECC--CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 7999626--780899999987199258988654
Q gi|254780544|r 72 DAFILGP--IPSPAVAMLTRSLRADVGVMISAS 102 (448)
Q Consensus 72 ~V~~~g~--~ptP~l~~a~~~~~~~gGI~iTaS 102 (448)
+++|+.. +|+|.+--|++...-.|=+.|||.
T Consensus 122 D~IDlDPfGSp~pflDsAi~~v~~~GlL~vTaT 154 (376)
T PRK04338 122 DVVDIDPFGSPAPFLDSAIRALRRGGLLCVTAT 154 (376)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 778678999920879999998403988999946
No 76
>pfam06574 FAD_syn FAD synthetase. This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.
Probab=48.89 E-value=19 Score=15.98 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=14.0
Q ss_pred EEEEECCCCCCC----CCCCCCCCCCCCCCCCCC
Q ss_conf 999844665433----332221233322222223
Q gi|254780544|r 179 IVVDCANGASYK----VAPEVFWELGADVVVIGD 208 (448)
Q Consensus 179 vvvD~~~G~~~~----~~~~il~~lg~~~~~i~~ 208 (448)
|..|+..|-.+. .+.++.+..|.++..+..
T Consensus 113 vG~df~FG~~r~G~~~~L~~~~~~~g~~v~~i~~ 146 (158)
T pfam06574 113 VGFDFRFGKGRAGDVELLKELGAKYGFEVTVVPP 146 (158)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 7365015799987999999999876948999698
No 77
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=48.60 E-value=19 Score=15.95 Aligned_cols=89 Identities=9% Similarity=0.046 Sum_probs=47.4
Q ss_pred CEEEE---ECCCCCHHHHHHHHHHHHHHCCCEEEE-EC-CCCHHH--------------HHHHHHHHCCCEEEEEEECCC
Q ss_conf 38999---668779799999999999978987999-62-678089--------------999998719925898865477
Q gi|254780544|r 44 RVVIG---KDTRLSGYMLENSLVAGFTAAGMDAFI-LG-PIPSPA--------------VAMLTRSLRADVGVMISASHN 104 (448)
Q Consensus 44 ~vvVg---~D~R~~s~~~~~~~~~gl~~~G~~V~~-~g-~~ptP~--------------l~~a~~~~~~~gGI~iTaSHN 104 (448)
++-+. +|.+..-......+..-....|+.... +. .+|..+ ++-|+|. .-.|+|.+++...
T Consensus 511 ~l~l~~~pf~l~~ll~~v~~~~~~~a~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsNAiKF-T~~G~V~l~~~~~ 589 (912)
T PRK11466 511 NVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSNALRF-TDEGSIVLRSRTD 589 (912)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEC
T ss_conf 138861156899999999999999998379789997279998608635889999999999987061-8996799999986
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 7520125640365456783578999999615
Q gi|254780544|r 105 PYQDNGIKLFGPDGYKVSTDIEDRIETLLED 135 (448)
Q Consensus 105 P~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~ 135 (448)
...+. |.+ ...|..|+++....|.+.|.+
T Consensus 590 ~~~l~-~~V-~DTGiGI~~e~~~~IF~~F~Q 618 (912)
T PRK11466 590 GEQWL-VEV-EDSGCGIDPAKLAEIFQPFVQ 618 (912)
T ss_pred CCEEE-EEE-EECCCCCCHHHHHHHHCCCCC
T ss_conf 97899-998-508999999999988447615
No 78
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.84 E-value=21 Score=15.69 Aligned_cols=82 Identities=26% Similarity=0.303 Sum_probs=50.3
Q ss_pred CCCCCEEEE----------ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH--CCCEE
Q ss_conf 335860155----------068778899999999999999972379983899966877979999999999997--89879
Q gi|254780544|r 6 FGTDGIRGK----------SNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTA--AGMDA 73 (448)
Q Consensus 6 FGt~GiRG~----------~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~--~G~~V 73 (448)
|...||||+ +--+|++|+-+.-|-.=+. -+......++-.|.. .-|.. ..++|
T Consensus 60 lsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~----~N~~~~~~v~n~DAN-----------~lm~~~~~~fd~ 124 (380)
T COG1867 60 LSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR----LNSGEDAEVINKDAN-----------ALLHELHRAFDV 124 (380)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----HCCCCCCEEECCHHH-----------HHHHHCCCCCCE
T ss_conf 55533667545342576179971589899999999998----347666325534289-----------998725887637
Q ss_pred EEECC--CCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 99626--780899999987199258988654
Q gi|254780544|r 74 FILGP--IPSPAVAMLTRSLRADVGVMISAS 102 (448)
Q Consensus 74 ~~~g~--~ptP~l~~a~~~~~~~gGI~iTaS 102 (448)
+|+.. +|.|.+--|.+..+-.|=+.|||-
T Consensus 125 IDiDPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 125 IDIDPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8138999972679999997222988999851
No 79
>PRK03098 consensus
Probab=42.37 E-value=24 Score=15.35 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 543333222123332222222322235
Q gi|254780544|r 187 ASYKVAPEVFWELGADVVVIGDKPNGI 213 (448)
Q Consensus 187 ~~~~~~~~il~~lg~~~~~i~~~pd~~ 213 (448)
+++..=.++|+.+|++...+...-|..
T Consensus 4 S~S~~R~~lL~~~gi~f~~~~~~iDE~ 30 (185)
T PRK03098 4 SGSPRRKELLELAGVPFEIIVSEVEET 30 (185)
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf 699999999986899959977999999
No 80
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=41.50 E-value=24 Score=15.27 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=16.0
Q ss_pred CEEEEE-EECCCHHHHHHHHHHHHHHHH
Q ss_conf 279999-615998999999999999987
Q gi|254780544|r 418 SLIRIM-AEGDDLSRIKRIVDDLAKVIP 444 (448)
Q Consensus 418 p~iriy-~Ea~~~~~~~~l~~~~~~~i~ 444 (448)
|.++|+ .|+.+.+..+.|.+++.+.+.
T Consensus 2 P~v~V~l~eGRt~EQK~~lv~evTeav~ 29 (60)
T PRK02289 2 PFVTIDLFEGRSQEQKNALAREVTEVVS 29 (60)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 8599998259999999999999999999
No 81
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=39.35 E-value=26 Score=15.06 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=17.6
Q ss_pred CCCEEEEEECCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 89669998446654333----32221233322222223
Q gi|254780544|r 175 QGLRIVVDCANGASYKV----APEVFWELGADVVVIGD 208 (448)
Q Consensus 175 ~~lkvvvD~~~G~~~~~----~~~il~~lg~~~~~i~~ 208 (448)
+.+-|..|+..|..+.- +.++.++.|.++..+..
T Consensus 114 k~ivvG~Df~FG~~r~G~~~~L~~~~~~~g~~v~~v~~ 151 (303)
T PRK05627 114 KFVVVGDDFRFGKKRAGDFELLQEAGKEFGFEVEVVPE 151 (303)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCC
T ss_conf 49997577333678888999999999874961897756
No 82
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=38.59 E-value=23 Score=15.40 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=4.3
Q ss_pred HHHHHHCCCCCC
Q ss_conf 444320012111
Q gi|254780544|r 293 LERFIAGLGLSL 304 (448)
Q Consensus 293 i~~~a~~~g~~v 304 (448)
+|.+++++|.++
T Consensus 136 ~D~~a~~~g~~i 147 (338)
T PRK05788 136 VDTIAKQLNARI 147 (338)
T ss_pred CHHHHHHCCCEE
T ss_conf 034455339760
No 83
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=38.53 E-value=12 Score=17.08 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=29.1
Q ss_pred HHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7632631021189669998446654333322212333222222
Q gi|254780544|r 164 VKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVI 206 (448)
Q Consensus 164 l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i 206 (448)
|...++.....++-+||+-|.+|.=+..+...|.+.|.++..+
T Consensus 44 L~~~~~~~~~~k~~~ivl~C~~G~RS~~AA~~L~~~G~~v~~L 86 (95)
T cd01534 44 LVQETDHFAPVRGARIVLADDDGVRADMTASWLAQMGWEVYVL 86 (95)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 8777654246689839998599987999999999869976995
No 84
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=38.42 E-value=18 Score=16.12 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=27.0
Q ss_pred EE--EEECCCCCHHHHHHHHHHHHHHCCCEEEEEC----------CCCHHH----HHHHH--HHHCCCEEEEEE
Q ss_conf 89--9966877979999999999997898799962----------678089----99999--871992589886
Q gi|254780544|r 45 VV--IGKDTRLSGYMLENSLVAGFTAAGMDAFILG----------PIPSPA----VAMLT--RSLRADVGVMIS 100 (448)
Q Consensus 45 vv--Vg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g----------~~ptP~----l~~a~--~~~~~~gGI~iT 100 (448)
|+ -+||+- +|+.+.+.|+||++.| ..+.|+ +-|.+ -+.|+.-...||
T Consensus 19 iv~lTAYD~~---------~A~~~~~~Gv~viLVGDSLgM~~lg~~~Tl~vsv~~m~yHT~AV~rGa~~~liv~ 83 (267)
T TIGR00222 19 IVALTAYDYA---------FAKLFEDAGVDVILVGDSLGMVVLGLDSTLPVSVADMIYHTKAVKRGAPNALIVT 83 (267)
T ss_pred EEEECHHHHH---------HHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 7875266789---------9999974798089973211066604477611018888878899854798734663
No 85
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=38.30 E-value=14 Score=16.76 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCC--CCCCCCCCHHHHHHCCCCE
Q ss_conf 10001332237553311356777765532002234333221136004443200121111--1233211011111028970
Q gi|254780544|r 247 DRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLK--RTEVGDRYIMEYMKNNGFN 324 (448)
Q Consensus 247 DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~--~t~vG~k~i~~~~~~~~~~ 324 (448)
.|++++|.+ +.++++.+++.+= -..-|+-+|.+-.-=..+.++|++||+=.+ |..|||. ..+..
T Consensus 187 ~~~f~~dkq---v~a~~vAa~v~EP----vQGEGGFivp~k~fv~a~~~~C~ehgiVfiADEvQtGFA-------RTG~~ 252 (427)
T TIGR00700 187 EALFVADKQ---VEAENVAAVVIEP----VQGEGGFIVPAKEFVAAVLDLCKEHGIVFIADEVQTGFA-------RTGKL 252 (427)
T ss_pred HHHHHHCCC---CCCCCEEEEEEEC----CCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCC-------HHCCC
T ss_conf 983121033---2501043789732----247887333858899999997543875899725456800-------00211
Q ss_pred ECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 0134662365301000144423320246677755888899998
Q gi|254780544|r 325 VGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICH 367 (448)
Q Consensus 325 ~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~ 367 (448)
|+.|+ ...||+-.=|.-..---.-|.|||-++-
T Consensus 253 FA~eH----------~~~dGl~PDLit~aKslA~GlPLSgV~G 285 (427)
T TIGR00700 253 FAIEH----------YDDDGLKPDLITVAKSLADGLPLSGVVG 285 (427)
T ss_pred EEEEE----------CCCCCCCCCHHHHHHHHHCCCCCCHHHC
T ss_conf 25410----------0678887518878667735686211104
No 86
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=38.13 E-value=27 Score=14.95 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=20.5
Q ss_pred HHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCC---CCCCCCCC
Q ss_conf 666887763263102118966999844665433332221233---32222222
Q gi|254780544|r 158 DRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWEL---GADVVVIG 207 (448)
Q Consensus 158 ~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~l---g~~~~~i~ 207 (448)
+.+++.+.+... .+.+-+..|...|....--.+.|+.+ |.+++.+.
T Consensus 104 ~~Fv~~lv~~l~----~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~ 152 (304)
T COG0196 104 EEFVELLVEKLN----VKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVP 152 (304)
T ss_pred HHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEEC
T ss_conf 899999984458----7289993364168888898999997355785399945
No 87
>PRK13055 putative lipid kinase; Reviewed
Probab=38.02 E-value=23 Score=15.37 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=18.2
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 530100014442332024667775588889999865642
Q gi|254780544|r 334 ILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEY 372 (448)
Q Consensus 334 ~~~~~~~~~Dgi~a~l~~le~l~~~~~~l~~l~~~l~~~ 372 (448)
.+.....-.||++..+.+ +..+..+++..+++.
T Consensus 210 ~iaP~A~~dDGllDv~iv------k~~s~~~ll~l~~~~ 242 (334)
T PRK13055 210 QIAPDAKLDDGMFTLIIV------KTANLFELLHLMALI 242 (334)
T ss_pred EECCCCCCCCCEEEEEEE------CCCCHHHHHHHHHHH
T ss_conf 168977678877999998------248999999999999
No 88
>pfam01474 DAHP_synth_2 Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyse the first step of the shikimate pathway.
Probab=37.98 E-value=28 Score=14.93 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 889999999999999997237998389996687
Q gi|254780544|r 20 ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTR 52 (448)
Q Consensus 20 ~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R 52 (448)
.++.-+.++-.-++.+-. +..-|+=|-|.=
T Consensus 38 V~a~Ei~~Lr~~La~va~---G~aFlLQgGDCA 67 (437)
T pfam01474 38 VFAGEIRRLKEQLADVAR---GEAFLLQGGDCA 67 (437)
T ss_pred CCHHHHHHHHHHHHHHHC---CCEEEEECCCCC
T ss_conf 789999999999999966---987998776545
No 89
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=37.80 E-value=28 Score=14.91 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=7.7
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 444320012111112
Q gi|254780544|r 293 LERFIAGLGLSLKRT 307 (448)
Q Consensus 293 i~~~a~~~g~~v~~t 307 (448)
+..+|++.|..+...
T Consensus 223 ia~ice~~g~D~~~V 237 (414)
T COG1004 223 IANICEKVGADVKQV 237 (414)
T ss_pred HHHHHHHHCCCHHHH
T ss_conf 999999969899999
No 90
>KOG2451 consensus
Probab=37.70 E-value=28 Score=14.90 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
Q ss_conf 797999999999999789879996267808999999
Q gi|254780544|r 53 LSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLT 88 (448)
Q Consensus 53 ~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~ 88 (448)
+.+-|+.+-.... +++||.|+.-..--||....+.
T Consensus 171 FP~AMItRK~gAA-LAaGCTvVvkPs~~TPlsaLal 205 (503)
T KOG2451 171 FPAAMITRKAGAA-LAAGCTVVVKPSEDTPLSALAL 205 (503)
T ss_pred CHHHHHHHHHHHH-HHCCCEEEECCCCCCCHHHHHH
T ss_conf 8399987677888-7548669981577884689999
No 91
>PRK06696 uridine kinase; Validated
Probab=37.62 E-value=28 Score=14.90 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH--HHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999999999999972379983899966877979--99999999999789879996
Q gi|254780544|r 22 PNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGY--MLENSLVAGFTAAGMDAFIL 76 (448)
Q Consensus 22 ~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~--~~~~~~~~gl~~~G~~V~~~ 76 (448)
..++..|+..+ .....+.+++||-|+...|- .|+..++..|...|..|+.+
T Consensus 8 ~~~~~~~~~~i----~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v 60 (227)
T PRK06696 8 KQVVKEIANHI----LTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRA 60 (227)
T ss_pred HHHHHHHHHHH----HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 78999999999----835999868999778998787999999999997469948997
No 92
>pfam02706 Wzz Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.
Probab=37.61 E-value=28 Score=14.90 Aligned_cols=35 Identities=17% Similarity=0.426 Sum_probs=30.2
Q ss_pred CEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 65999677982279999615998999999999999
Q gi|254780544|r 407 DRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAK 441 (448)
Q Consensus 407 ~w~liRpSgTEp~iriy~Ea~~~~~~~~l~~~~~~ 441 (448)
+.+-|.+.+...+++|.+++.|++.+.++++.+.+
T Consensus 104 ~~l~v~~~~~t~li~Is~~~~dP~~Aa~iaN~~a~ 138 (139)
T pfam02706 104 KKITVENGKDTGILTVSVTGEDPEEAARIANSIAE 138 (139)
T ss_pred HCCEEECCCCCEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 18279737995799999976999999999887733
No 93
>pfam08886 GshA Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=36.28 E-value=29 Score=14.76 Aligned_cols=275 Identities=17% Similarity=0.196 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHH---HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 788999999999999999723-79983899966877979999---99999999789879996267808999999871992
Q gi|254780544|r 19 PITPNFMMRIGIAVGYLFRGK-KKHRRVVIGKDTRLSGYMLE---NSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRAD 94 (448)
Q Consensus 19 ~~t~~~v~~i~~a~~~~~~~~-~~~~~vvVg~D~R~~s~~~~---~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~ 94 (448)
.++|++.....+|+-.+++.. +..++|+|==..+.-...+- ..+...|..+|.+|..-..- |.+.-.+ .+...
T Consensus 53 NL~~~~~~lav~a~~~~iek~~p~ak~iLiIPE~HTRN~fYleNv~~L~~il~~AG~~VrvGs~~--pei~~~~-~~~~~ 129 (404)
T pfam08886 53 NLNPEFLPLAVQAAMAAIEKICPDAKNLLLIPENHTRNTFYLENVAALKEILRQAGLNVRIGSLD--PEITEPT-TLELP 129 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC--CCCCCCE-EEECC
T ss_conf 69978999999999999998597755699924767754889999999999999749669960787--0126865-67558
Q ss_pred EE--EEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 58--9886547775201256403654567835789999996156643344543322211135425666887763263102
Q gi|254780544|r 95 VG--VMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDV 172 (448)
Q Consensus 95 gG--I~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~ 172 (448)
.| +.+-.-.+..+.-+++=|.++-.-+.-+....|-.+++......+-.+-..|+..+...-+=.|.+.+.+-+...+
T Consensus 130 ~g~~l~lepl~r~~~~l~~~~F~Pc~ILLNNDLS~GiP~iL~~l~~Q~ilPpl~~GW~~RrKS~HF~~Y~~v~~eF~~l~ 209 (404)
T pfam08886 130 NGDTLTLEPLVRKGGRLGLKGFDPCLILLNNDLSSGIPEILQGLHEQYLLPPLHAGWANRRKSNHFSAYDEVAKEFAKLI 209 (404)
T ss_pred CCCEEEEEEEEECCCEEEECCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHH
T ss_conf 99756788788519988856888757997475443683566064655055984567441012267899999999999974
Q ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 11896699984466543333222123332222222322235577442210137776420023430367531552100013
Q gi|254780544|r 173 TLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIV 252 (448)
Q Consensus 173 ~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR~~iv 252 (448)
...++ .+.+. |.. |+-+-++.. -..++.......+...+++.-...||--.| +++|
T Consensus 210 ~IDpW--li~p~-----------f~~--c~~idf~~~-----~g~~~La~~Vd~lL~kI~~KY~eygI~ekP----fV~V 265 (404)
T pfam08886 210 GIDPW--LINPL-----------FSS--CGGVDFHDR-----EGEECLAEKVDALLAKIREKYKEYGIKEKP----FVFV 265 (404)
T ss_pred CCCCH--HCCCC-----------CCC--CCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHCCCCCCC----EEEE
T ss_conf 99911--13535-----------023--076267744-----369999999999999999999970999884----5999
Q ss_pred -CCCCC-------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCE
Q ss_conf -32237-------5533113567777655320022343332211360044432001211111233211011111028970
Q gi|254780544|r 253 -DEKGA-------IVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFN 324 (448)
Q Consensus 253 -d~~G~-------~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~ 324 (448)
.+.|. +-+|+++..|--+---+-...|+ ...+++++=+-|+..+++--+ .++|-+ -+.
T Consensus 266 Kad~GTYGMGIm~v~~~~ei~~Lnrk~RnKM~~~K~---------g~~v~~viiQEGV~T~e~~~~--avaEPV---VY~ 331 (404)
T pfam08886 266 KADAGTYGMGIMTVRSGDEVLALNRKQRNKMSVIKE---------GLEVSEVIIQEGVYTFERFND--AVAEPV---VYM 331 (404)
T ss_pred ECCCCCCCCEEEEECCHHHHHHHCHHHHHHHHHCCC---------CCCCCEEEEECCCCEEEEECC--CCCCCE---EEE
T ss_conf 678998773379955999998867777765664048---------875200789668632332489--535756---999
Q ss_pred ECCCCCCEEE
Q ss_conf 0134662365
Q gi|254780544|r 325 VGGEQSGHII 334 (448)
Q Consensus 325 ~g~E~sg~~~ 334 (448)
++.+-.|||+
T Consensus 332 id~~vvggFY 341 (404)
T pfam08886 332 IDRYVVGGFY 341 (404)
T ss_pred ECCEEEEEEE
T ss_conf 8888757889
No 94
>PRK08114 cystathionine beta-lyase; Provisional
Probab=34.91 E-value=12 Score=17.12 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 8389996687797999999999999789879996267
Q gi|254780544|r 43 RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPI 79 (448)
Q Consensus 43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ 79 (448)
...+=+|...++...+.+.++.-=-+.++-++--|+.
T Consensus 52 ~~~~YsR~~NPT~~~lE~~la~LEg~~~a~~fsSGma 88 (395)
T PRK08114 52 GELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAA 88 (395)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 8767778988769999999999709973798268899
No 95
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=34.66 E-value=31 Score=14.60 Aligned_cols=224 Identities=17% Similarity=0.200 Sum_probs=99.4
Q ss_pred HHHHHHHC-CCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 99999723-79983899966--877979999999999997898799-962678089999998719925898865477752
Q gi|254780544|r 32 VGYLFRGK-KKHRRVVIGKD--TRLSGYMLENSLVAGFTAAGMDAF-ILGPIPSPAVAMLTRSLRADVGVMISASHNPYQ 107 (448)
Q Consensus 32 ~~~~~~~~-~~~~~vvVg~D--~R~~s~~~~~~~~~gl~~~G~~V~-~~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~ 107 (448)
+ .||+.. ...-+=+|-+| .|++.=...++|.+=|...|+--+ .+. |=+|--.+|..|+-.|+..|..
T Consensus 72 L-kYfES~~~i~v~G~vv~e~~~~~Snwra~~SL~~~L~~~~ipgI~GvD---TRaLv~~iR~~G~m~g~I~~~~----- 142 (383)
T TIGR01368 72 L-KYFESKGKIHVKGLVVRELSDRYSNWRATESLDQFLKEHGIPGIYGVD---TRALVKKIREKGTMKGVISTED----- 142 (383)
T ss_pred C-EEEEECCEEEEEEEEEECCCCCCCHHHHHCCHHHHHHHCCCEEEECCC---HHHHHHHHHHCCCEEEEEEECC-----
T ss_conf 3-034328834899998541236787155650489999856984730457---7999999863585478996067-----
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHCCCCHHH-CCCCEE-EEE
Q ss_conf 01256403654567835789999996-156643344543322211135--4256668877632631021-189669-998
Q gi|254780544|r 108 DNGIKLFGPDGYKVSTDIEDRIETLL-EDDLTSYLSCYDSIGHAKRVD--GVHDRYIEHVKRTLPRDVT-LQGLRI-VVD 182 (448)
Q Consensus 108 ~nGiK~~~~~G~~i~~~~~~~Ie~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~Yi~~l~~~~~~~~~-~~~lkv-vvD 182 (448)
.. .++.++++- ...... ..+-....+... .+.+.-.+.- +.+..... .++++| ++|
T Consensus 143 -------------~~--~~~~~~~~~f~~p~~~---~~nLv~~Vst~~~~~~~~~~~~~~-~~~~~~~~g~~~~~Vv~~D 203 (383)
T TIGR01368 143 -------------SN--DEELVEKAKFESPDID---GINLVAEVSTKEPYTWGQGTWNLW-KFFVAKRNGKKPLRVVVID 203 (383)
T ss_pred -------------CC--HHHHHHHHHHHCCCCC---CCCCCCCEECCCCEEECCCCCHHH-HHHHHCCCCCCCEEEEEEE
T ss_conf -------------67--0356778654246757---765201001146556068864166-4322113689735999985
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCC------CCCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 44665433332221233322222223----------22235577442------210137776420023430367531552
Q gi|254780544|r 183 CANGASYKVAPEVFWELGADVVVIGD----------KPNGININLDC------GSTNVLSLQRKVHEVRADIGIALDGDG 246 (448)
Q Consensus 183 ~~~G~~~~~~~~il~~lg~~~~~i~~----------~pd~~~~~~~~------~~~~~~~l~~~v~~~~ad~Gia~DgD~ 246 (448)
| |+=..++.+|.+ -||+++.+.. .|||.|..=-| -...+....+.+.+.-.=|||++
T Consensus 204 f--G~K~nIlr~L~~-rG~~v~vVP~~~~~~~i~~~~PDGiflSNGPGDPH~~~~~~i~~~~~l~~~~~P~fGICL---- 276 (383)
T TIGR01368 204 F--GVKQNILRRLVK-RGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPHAAVEPAIETVRELLEAKIPIFGICL---- 276 (383)
T ss_pred C--CCCHHHHHHHHH-CCCEEEEECCCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH----
T ss_conf 5--887558989976-698799967899889998657888999087988056789999999999844897100266----
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHH--HHHHHHCCCCCCC-CCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 100013322375533113567777--6553200223433-3221136004443200121111
Q gi|254780544|r 247 DRVIIVDEKGAIVNGDQIMALIAR--EWMSHSLLRGNGI-VTTVMSNIGLERFIAGLGLSLK 305 (448)
Q Consensus 247 DR~~ivd~~G~~i~~d~~~~lla~--~ll~~~~~~~~~v-v~~v~ss~~i~~~a~~~g~~v~ 305 (448)
|+|++||.+- -+.-+..+||... |.+..+ .-++--+..||--|-
T Consensus 277 --------------GHQllALA~Ga~TyKlKFGHRG~NhPV~~~~~-g~v~ITsQNHGyAVD 323 (383)
T TIGR01368 277 --------------GHQLLALAFGAKTYKLKFGHRGGNHPVKDLRT-GRVEITSQNHGYAVD 323 (383)
T ss_pred --------------HHHHHHHHCCCCEEECCCCCCCCCCCEEECCC-CEEEEEEECCCEECC
T ss_conf --------------68999997388700046567887513144279-879999706871257
No 96
>TIGR00512 aIF-2BI_fam translation initiation factor, putative, aIF-2BI family; InterPro: IPR005251 This family contains proteins designated as translation initiation factor 2B subunit 1 (alpha) and 5-methylthioribose-1-phosphate isomerase (MTNA, 5.3.1.23 from EC, ). The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. 5-methylthioribose-1-phosphate isomerase (MTNA) participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthio ribulose-1-phosphate . The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species..
Probab=34.56 E-value=31 Score=14.59 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCC--CCHHHHHHHHH
Q ss_conf 210001332237553--31135677776
Q gi|254780544|r 246 GDRVIIVDEKGAIVN--GDQIMALIARE 271 (448)
Q Consensus 246 ~DR~~ivd~~G~~i~--~d~~~~lla~~ 271 (448)
|||+. ++|.+.+ |-..++++|++
T Consensus 208 ADRIa---~~GdvaNKIGTY~lAvlAK~ 232 (306)
T TIGR00512 208 ADRIA---RDGDVANKIGTYGLAVLAKA 232 (306)
T ss_pred CCEEE---CCCCEEEHHHHHHHHHHHHC
T ss_conf 31210---68932400667899999820
No 97
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047 This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , . CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=32.94 E-value=33 Score=14.43 Aligned_cols=76 Identities=13% Similarity=0.227 Sum_probs=42.3
Q ss_pred EEEEEC--CCCC------HHHHHHH-HHHHHHHCCC-EEEEECC-CCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEE
Q ss_conf 899966--8779------7999999-9999997898-7999626-78089999998719925898865477752012564
Q gi|254780544|r 45 VVIGKD--TRLS------GYMLENS-LVAGFTAAGM-DAFILGP-IPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKL 113 (448)
Q Consensus 45 vvVg~D--~R~~------s~~~~~~-~~~gl~~~G~-~V~~~g~-~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~ 113 (448)
+..|.| .|.. ....... ..+-+.++|. |++..+. |+.|.+.....+++.. +||.|.+ ..--|+.+
T Consensus 295 ~CtGqe~~~R~~H~~EvFvG~~gN~~~~E~~iaTG~iD~~~~d~nC~~Psl~~~AE~y~v~---ii~vd~~-~~~~Ga~~ 370 (647)
T TIGR01702 295 ICTGQELLMRVGHLPEVFVGLVGNWLSQELLIATGAIDAMVVDVNCTLPSLPAVAEKYHVK---IITVDDL-AKIKGADY 370 (647)
T ss_pred EECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCE---EEEEEEE-EECCCCCC
T ss_conf 7404157534577762102347538989888841623776661258888714677361753---7874100-00177001
Q ss_pred ECCCCCCCCHHHHHH
Q ss_conf 036545678357899
Q gi|254780544|r 114 FGPDGYKVSTDIEDR 128 (448)
Q Consensus 114 ~~~~G~~i~~~~~~~ 128 (448)
+.+.+++...+
T Consensus 371 ----~i~y~~~~A~E 381 (647)
T TIGR01702 371 ----KIPYDPEKAEE 381 (647)
T ss_pred ----CCCCCHHHHHH
T ss_conf ----48988767889
No 98
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=32.81 E-value=30 Score=14.67 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC---CHHHHHHHH
Q ss_conf 99999999997237998389996687797999999999999789879996267---808999999
Q gi|254780544|r 27 RIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPI---PSPAVAMLT 88 (448)
Q Consensus 27 ~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~---ptP~l~~a~ 88 (448)
=||.|+....+ |=+++|-+=---|+ -=..+|.|.|.+|+.+... -.|.=|+.|
T Consensus 77 GiGLAL~Aa~k----GYk~Iiv~PeKmS~-----eKv~VL~AlGAEivrtPT~a~~d~PeSh~gV 132 (527)
T TIGR01137 77 GIGLALVAAIK----GYKCIIVLPEKMSE-----EKVDVLKALGAEIVRTPTAAAFDSPESHIGV 132 (527)
T ss_pred HHHHHHHHHHC----CCEEEEECCCCCCH-----HHHHHHHHHCCEEEECCCCCCCCCCCCCCHH
T ss_conf 68999999526----86399986875461-----4789999819807787888788848652048
No 99
>PRK00238 consensus
Probab=32.58 E-value=34 Score=14.39 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 654333322212333222222232223
Q gi|254780544|r 186 GASYKVAPEVFWELGADVVVIGDKPNG 212 (448)
Q Consensus 186 G~~~~~~~~il~~lg~~~~~i~~~pd~ 212 (448)
++++..=.++|+++|++...+...-|.
T Consensus 7 AS~Sp~R~~lL~~~gi~f~~~~~~iDE 33 (198)
T PRK00238 7 ASGSPRRRELLTQIGVPFSVLSAPIDE 33 (198)
T ss_pred CCCCHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 389999999998789982998389999
No 100
>TIGR01780 SSADH succinic semialdehyde dehydrogenase; InterPro: IPR010102 Succinic semialdehyde dehydrogenase is one of three enzymes constituting 4-aminobutyrate (GABA) degradation in both prokaryotes and eukaryotes, catalysing the (NAD(P)+)-dependent catabolism reaction of succinic semialdehyde to succinate for metabolism by the citric acid cycle. In Escherichia coli, succinic semialdehyde dehydrogenase is located in a unidirectionally transcribed gene cluster encoding enzymes for GABA degradation and is suggested to be co-transcribed with succinic semialdehyde transaminase from a common promoter upstream of SSADH . Similar gene arrangements can be found in characterised Ralstonia eutropha and the genome analysis of Bacillus subtilis. Prokaryotic succinic semialdehyde dehydrogenases (1.2.1.16 from EC) share high sequence homology to characterised succinic semialdehyde dehydrogenases from rat and human (1.2.1.24 from EC), exhibiting conservation of proposed cofactor binding residues, and putative active sites (G-237 and G-242, C-293 and G-259 respectively of rat SSADH) . Eukaryotic SSADH enzymes exclusively utilise NAD+ as a cofactor, exhibiting little to no NADP+ activity . While a NADP+ preference has been detected in prokaryotes in addition to both NADP+- and NAD+-dependencies as in Escherichia coli, Pseudomonas, and Klebsiella pneumoniae . The function of this alternative SSADH currently is unknown, but has been suggested to play a possible role in 4-hydroxyphenylacetic degradation . SSADH enzyme belongs to the aldehyde dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase . Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family. ; GO: 0016620 oxidoreductase activity acting on the aldehyde or oxo group of donors NAD or NADP as acceptor.
Probab=30.66 E-value=36 Score=14.20 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEE------EEEECCCCCCCEEEEEE
Q ss_conf 7797999999999999789879996267808999999871992589------88654777520125640
Q gi|254780544|r 52 RLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGV------MISASHNPYQDNGIKLF 114 (448)
Q Consensus 52 R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI------~iTaSHNP~~~nGiK~~ 114 (448)
.+-|-||.|=.+..| ++||.++.-..--||.-.++.-+|-..+|| +||.|.|-...-|=.+.
T Consensus 129 NFPaAMITRKagaAL-AAGCT~i~KPA~~TPlsALaLA~LA~~AG~P~GVlnVi~g~~~~a~~~G~~Lt 196 (454)
T TIGR01780 129 NFPAAMITRKAGAAL-AAGCTVIIKPAEQTPLSALALARLAEEAGIPKGVLNVITGSANDAEEVGKVLT 196 (454)
T ss_pred CCHHHHHHHHHHHHH-HCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHCCEEC
T ss_conf 872367773344676-30682786378888478999999998578999841356176404355150002
No 101
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family; InterPro: IPR010158 Enzymes in this subfamily hydrolyse the amide bonds of compounds containing carbamoyl groups or hydantoin rings . These enzymes are members of the broader family of amidases.; GO: 0016813 hydrolase activity acting on carbon-nitrogen (but not peptide) bonds in linear amidines, 0008152 metabolic process.
Probab=30.61 E-value=16 Score=16.34 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHCCCEEEE--ECCCCHHHHHHHHH-HHCCCEEEEEEECCCCCCCEEEEEECCCC
Q ss_conf 99999999999978987999--62678089999998-71992589886547775201256403654
Q gi|254780544|r 56 YMLENSLVAGFTAAGMDAFI--LGPIPSPAVAMLTR-SLRADVGVMISASHNPYQDNGIKLFGPDG 118 (448)
Q Consensus 56 ~~~~~~~~~gl~~~G~~V~~--~g~~ptP~l~~a~~-~~~~~gGI~iTaSHNP~~~nGiK~~~~~G 118 (448)
+..+..+.+=++++|+.|.. +|-. |+.+ -.+.+.-.++.+||--.-+||=+|=+.=|
T Consensus 31 r~~~~~~~~~mr~~Gl~v~~D~~GNL------~gr~~G~~p~~~~vl~GSHlDtv~nGG~fDG~lG 90 (406)
T TIGR01879 31 REAKDLVKKRMRAAGLEVEIDEVGNL------IGRKEGTEPDLEVVLVGSHLDTVVNGGKFDGVLG 90 (406)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCC------EECCCCCCCCCCEEEEECCHHCCCCCCCCCCHHH
T ss_conf 99999999999865981765252230------2106787888772788222102379872063667
No 102
>TIGR02408 ectoine_ThpD ectoine hydroxylase; InterPro: IPR012774 Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.; GO: 0016725 oxidoreductase activity acting on CH or CH2 groups.
Probab=30.00 E-value=25 Score=15.21 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=24.1
Q ss_pred EEEEE--CCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCHHHH
Q ss_conf 99984--46654333322212333222222----23222355774422101377
Q gi|254780544|r 179 IVVDC--ANGASYKVAPEVFWELGADVVVI----GDKPNGININLDCGSTNVLS 226 (448)
Q Consensus 179 vvvD~--~~G~~~~~~~~il~~lg~~~~~i----~~~pd~~~~~~~~~~~~~~~ 226 (448)
+.+|| |||++.++.|--- .+|..+ .+..+.+|-.|.+.|+++..
T Consensus 221 ~wFDcN~mHGSgsNItP~pR----sNVF~VfNSveNal~ePfaap~rRPE~iaa 270 (278)
T TIGR02408 221 VWFDCNLMHGSGSNITPYPR----SNVFLVFNSVENALEEPFAAPRRRPEYIAA 270 (278)
T ss_pred HHHHCCCCCCCCCCCCCCCC----CCEEEEECCHHHHCCCCCCCCCCCCHHHHH
T ss_conf 42220100478888887543----452678615043027763467878314432
No 103
>TIGR02877 spore_yhbH sporulation protein YhbH; InterPro: IPR014230 Proteins in this entry, typified by YhbH from Bacillus subtilis, are found in the genomes of nearly every endospore-forming bacterium, and in no other genomes. The gene in Bacillus subtilis was shown to be a member of the sigma-E regulon, with mutation leading to a sporulation defect ..
Probab=29.75 E-value=37 Score=14.15 Aligned_cols=28 Identities=18% Similarity=0.060 Sum_probs=13.7
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 2365301000144423320246677755
Q gi|254780544|r 331 GHIILSDYGSTGDGLVAALQVLRYIKQY 358 (448)
Q Consensus 331 g~~~~~~~~~~~Dgi~a~l~~le~l~~~ 358 (448)
.||..++....+|.=++.-++.+++..+
T Consensus 308 FHfSDGDNl~~Dn~Rlav~l~~~L~~~c 335 (392)
T TIGR02877 308 FHFSDGDNLSSDNERLAVKLVRKLLEVC 335 (392)
T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3553377889886468999999998876
No 104
>PRK08185 hypothetical protein; Provisional
Probab=29.58 E-value=38 Score=14.08 Aligned_cols=87 Identities=16% Similarity=0.095 Sum_probs=54.2
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHH
Q ss_conf 506877889999999999999997237998389996687---7979999999999997898799-962678089999998
Q gi|254780544|r 14 KSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTR---LSGYMLENSLVAGFTAAGMDAF-ILGPIPSPAVAMLTR 89 (448)
Q Consensus 14 ~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R---~~s~~~~~~~~~gl~~~G~~V~-~~g~~ptP~l~~a~~ 89 (448)
-+|. .|.+.+..+-.|.. ..+++|++..-.. +.+..+...+........+.|. .+.-+.+...-....
T Consensus 17 AfNv--~~~e~~~avi~AAe------e~~sPvIiq~s~~~~~~~g~~~~~~~~~~a~~~~VpV~lHLDH~~~~e~~~~ai 88 (283)
T PRK08185 17 AFNV--ADSCFLRAVVEEAE------ANNAPAIIAIHPNELDFVGDDFFAYVRERAQRSPVPFVIHLDHGASVEDVMRAI 88 (283)
T ss_pred EEEE--CCHHHHHHHHHHHH------HHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf 9888--99999999999999------978798999381288771199999999999877998999899999999999999
Q ss_pred HHCCCEEEEEEECCCCCCCE
Q ss_conf 71992589886547775201
Q gi|254780544|r 90 SLRADVGVMISASHNPYQDN 109 (448)
Q Consensus 90 ~~~~~gGI~iTaSHNP~~~n 109 (448)
..+++ .||+-+||-|.+.|
T Consensus 89 ~~GFs-SVM~DgS~lp~eeN 107 (283)
T PRK08185 89 RCGFT-SVMIDGSLLPYEEN 107 (283)
T ss_pred HCCCC-EEEEECCCCCHHHH
T ss_conf 82998-79863898999999
No 105
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=29.24 E-value=38 Score=14.05 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=13.4
Q ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 42002343036753155210001332237553
Q gi|254780544|r 229 RKVHEVRADIGIALDGDGDRVIIVDEKGAIVN 260 (448)
Q Consensus 229 ~~v~~~~ad~Gia~DgD~DR~~ivd~~G~~i~ 260 (448)
..++...||+.+ +++|=|+|+-+.
T Consensus 172 ~i~~g~~ADv~V--------~ALIGERGREVR 195 (430)
T TIGR02546 172 MIARGASADVNV--------IALIGERGREVR 195 (430)
T ss_pred HHHCCCCCCEEE--------EEECCCCCHHHH
T ss_conf 986189887899--------860278760478
No 106
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=28.91 E-value=39 Score=14.01 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHCCCCCCEEEE-ECCCCCHHHHHHHHHHH-------HHHCCCEEEEECCCCHHHHHHHHHHHC--CCEE
Q ss_conf 9999999999723799838999-66877979999999999-------997898799962678089999998719--9258
Q gi|254780544|r 27 RIGIAVGYLFRGKKKHRRVVIG-KDTRLSGYMLENSLVAG-------FTAAGMDAFILGPIPSPAVAMLTRSLR--ADVG 96 (448)
Q Consensus 27 ~i~~a~~~~~~~~~~~~~vvVg-~D~R~~s~~~~~~~~~g-------l~~~G~~V~~~g~~ptP~l~~a~~~~~--~~gG 96 (448)
++|.+++..+.. .+-.|+|| ++.--+....+..+-.. -...+.+|+.+ .+|.+...-..+.+. ..+=
T Consensus 11 niG~alA~~~a~--ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvL-AVP~~a~~~v~~~l~~~~~~K 87 (211)
T COG2085 11 NIGSALALRLAK--AGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVL-AVPFEAIPDVLAELRDALGGK 87 (211)
T ss_pred HHHHHHHHHHHH--CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEE-ECCHHHHHHHHHHHHHHHCCE
T ss_conf 187899999996--79739996478806788999864565334776888843998999-545787776999999870990
Q ss_pred EEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCC
Q ss_conf 98865477752012564036545678357899999961566433445433222111354256668877632631021189
Q gi|254780544|r 97 VMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQG 176 (448)
Q Consensus 97 I~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~ 176 (448)
|.|.++ ||-++ ..........+-.....+.|.+.+... +.+...+.+.. +.+... +. ...
T Consensus 88 IvID~t-np~~~-~~~~~~~~~~~~~~saae~va~~lp~a--kVVkAFn~i~a------------~~l~~~-~~---~~~ 147 (211)
T COG2085 88 IVIDAT-NPIEV-NGEPGDLYLVPSEGSAAEIVAKLLPGA--KVVKAFNTIPA------------AVLADL-AK---PGG 147 (211)
T ss_pred EEEECC-CCCCC-CCCCCCCCCCCCCCCHHHHHHHHCCCC--CHHHHHCCCCH------------HHHCCC-CC---CCC
T ss_conf 999668-87544-688301036888885999999977983--01465503578------------773137-77---687
Q ss_pred CEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6699984466-5433332221233322222223
Q gi|254780544|r 177 LRIVVDCANG-ASYKVAPEVFWELGADVVVIGD 208 (448)
Q Consensus 177 lkvvvD~~~G-~~~~~~~~il~~lg~~~~~i~~ 208 (448)
-+.+.=|.+- -+...+.++.+++|++.+....
T Consensus 148 ~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 148 RRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 566898459499999999999962966340356
No 107
>PRK11679 lipoprotein; Provisional
Probab=28.89 E-value=25 Score=15.14 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=17.9
Q ss_pred EEEEECCCCCCEEEEEEE-CC--CHHHHHHHHHHHHHHHH
Q ss_conf 599967798227999961-59--98999999999999987
Q gi|254780544|r 408 RLIVRASGTESLIRIMAE-GD--DLSRIKRIVDDLAKVIP 444 (448)
Q Consensus 408 w~liRpSgTEp~iriy~E-a~--~~~~~~~l~~~~~~~i~ 444 (448)
++.|.--|...-|.+.=+ ++ +.+.++.|..-+...++
T Consensus 304 ~iqvgdlgn~TSl~~~D~~g~plt~~~~~~l~~vl~a~~s 343 (345)
T PRK11679 304 KLQVGDLDNRSSLQFIDPKGHPLTQSQNDALVAVFQAAFS 343 (345)
T ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8998336993179998899797778999999999999860
No 108
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=28.79 E-value=38 Score=14.10 Aligned_cols=50 Identities=32% Similarity=0.401 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56668877632631021189669998446654333322212333222222232
Q gi|254780544|r 157 HDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDK 209 (448)
Q Consensus 157 ~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~ 209 (448)
++.-.+.+.+.++.+-.+++. -|.|..+|++...++ |.+.|++|+.+.-.
T Consensus 45 r~~mr~~~l~wl~~~~dl~G~-rVLDaGCGtG~la~~--LA~~Ga~V~avDiS 94 (230)
T PRK07580 45 HQRMRDTVLSWLPADGDLTGL-SILDAGCGTGSLSIP--LARRGAKVVASDIS 94 (230)
T ss_pred HHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHH--HHHCCCEEEEEECC
T ss_conf 999999999973105997899-898818786787999--99779989998389
No 109
>TIGR01330 bisphos_HAL2 3'(2'),5'-bisphosphate nucleotidase; InterPro: IPR006239 Sulphate is incorporated into 3-phosphoadenylylsulphate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulphate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. In plants these sequences represent a form of the enzyme, 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle. Sensitivity of this essential enzyme to sodium and other metal ions results is responsible for characterization of this enzyme as a salt tolerance protein . Some members of this family are active also as inositol 1-monophosphatase. ; GO: 0008441 3'(2')5'-bisphosphate nucleotidase activity, 0006790 sulfur metabolic process.
Probab=28.28 E-value=40 Score=13.94 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCEE-----EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 223557744221013777642002343036-----753155210001332237553311356777765532002234333
Q gi|254780544|r 210 PNGININLDCGSTNVLSLQRKVHEVRADIG-----IALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIV 284 (448)
Q Consensus 210 pd~~~~~~~~~~~~~~~l~~~v~~~~ad~G-----ia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv 284 (448)
||+.|.|..-.....+.+.+++...++.=| ...|| ||.+-.||.|+|++.-|| |+++ |..++
T Consensus 109 ~dflftn~~~~~~S~~d~l~~Id~G~y~GGr~GR~W~LDP-------iDGTkGFlRG~QYAvaLA--Lie~----Gkv~l 175 (382)
T TIGR01330 109 DDFLFTNELVKLKSAEDLLKIIDRGNYEGGRKGRHWVLDP-------IDGTKGFLRGDQYAVALA--LIEN----GKVVL 175 (382)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECC-------CCCCCCCCCHHHHHHHHH--HHHC----CCEEE
T ss_conf 6504424666756889999986257889888987577167-------567655622568999987--6527----90799
Q ss_pred CCCCCCCH-HHHHHHCC
Q ss_conf 22113600-44432001
Q gi|254780544|r 285 TTVMSNIG-LERFIAGL 300 (448)
Q Consensus 285 ~~v~ss~~-i~~~a~~~ 300 (448)
.-+-|+.+ +...+.+.
T Consensus 176 g~lGCPNlp~~~~~~~~ 192 (382)
T TIGR01330 176 GVLGCPNLPLKSEAAQN 192 (382)
T ss_pred EEEECCCCCHHHHCCCC
T ss_conf 98606885101102683
No 110
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=27.90 E-value=30 Score=14.73 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=19.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 315521000133223755331135677776553
Q gi|254780544|r 242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMS 274 (448)
Q Consensus 242 ~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~ 274 (448)
=|-||||+.+- +.+++-||+..|+..
T Consensus 47 eDEdGDRITVR-------SDeEm~AMisyy~~~ 72 (91)
T cd06395 47 EDEDGDRITVR-------SDEEMKAMLSYYCST 72 (91)
T ss_pred CCCCCCEEEEC-------CHHHHHHHHHHHHHH
T ss_conf 13558876871-------679999999999999
No 111
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=27.55 E-value=41 Score=13.86 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=39.5
Q ss_pred CCEEEEECCC-CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf 8389996687-79799999999999978987999626780899999987199258988654777520125640
Q gi|254780544|r 43 RRVVIGKDTR-LSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLF 114 (448)
Q Consensus 43 ~~vvVg~D~R-~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~ 114 (448)
++|+|.|-+- .+|.+.+..+-+.|...|+++-.- .+....+ ..+..++| ++|+.++-|.++ ++.++
T Consensus 1 KkIlVaCGsGiaTSt~v~~ki~~~l~e~gi~~~i~-~~~i~e~--~~~~~~~D--liv~tt~~~~~~-~iPvi 67 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVE-QCKIAEV--PSLLDDAD--LIVSTTKVPEDY-GIPVI 67 (89)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECHHHH--HHCCCCCC--EEEEECCCCCCC-CCCEE
T ss_conf 94999989970399999999999999869915999-9759998--74279987--899944268888-98789
No 112
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.54 E-value=5 Score=19.50 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHCCC--------EEEEEEECCCC-C-----CCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 267808999999871992--------58988654777-5-----20125640365456783578999999615
Q gi|254780544|r 77 GPIPSPAVAMLTRSLRAD--------VGVMISASHNP-Y-----QDNGIKLFGPDGYKVSTDIEDRIETLLED 135 (448)
Q Consensus 77 g~~ptP~l~~a~~~~~~~--------gGI~iTaSHNP-~-----~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~ 135 (448)
-..+.|++++.+.+.... .|=|.+--..- - ...|+.+++..+...+.+...-+-.+++.
T Consensus 81 pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~ 153 (429)
T COG0124 81 PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEA 153 (429)
T ss_pred CCCCHHHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCEEEEECCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 6674999999995622036872599833562378888887503687676776799865389999999999997
No 113
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=25.77 E-value=44 Score=13.66 Aligned_cols=191 Identities=17% Similarity=0.127 Sum_probs=79.6
Q ss_pred ECCCCCCHHHHHHH---HHHHHHHHHHC-----CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH----
Q ss_conf 06877889999999---99999999723-----7998389996687797999999999999789879996267808----
Q gi|254780544|r 15 SNTFPITPNFMMRI---GIAVGYLFRGK-----KKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSP---- 82 (448)
Q Consensus 15 ~~~~~~t~~~v~~i---~~a~~~~~~~~-----~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP---- 82 (448)
.+..+++++-+..| +..+-...+.. -.+++|..=+ .-.|-.-..++..+....|.+|++++...+-
T Consensus 11 L~~~dls~~ei~~il~~A~~~k~~~~~~~~~~~L~gk~v~~lF--~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~kG 88 (331)
T PRK02102 11 LKLLDFTPAEIEYLIDLSIELKAAKKAGIEHQYLKGKNIALIF--EKTSTRTRCAFEVAAIDLGAHVTYLGPNDIQLGKK 88 (331)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE--CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 8500099999999999999998766458877667999899995--58973059999999998599099578755637789
Q ss_pred -HHHHHHHHHC-CCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCHHHH
Q ss_conf -9999998719-925898865477752012564036545678357899999961566433445433222111-3542566
Q gi|254780544|r 83 -AVAMLTRSLR-ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKR-VDGVHDR 159 (448)
Q Consensus 83 -~l~~a~~~~~-~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (448)
.+.=.++.+. ...+|+++.. ....++.+.+....+.. +..+...+ .....|.
T Consensus 89 Es~~Dt~~~Ls~~~D~iviR~~----------------------~~~~~~~~a~~~~vPVI---N~~~~~~HPtQ~L~Dl 143 (331)
T PRK02102 89 ESMEDTARVLGRMYDGIEYRGF----------------------SQEIVEELAKYSGVPVW---NGLTDEWHPTQMLADF 143 (331)
T ss_pred CCHHHHHHHHHHHCCEEEEECC----------------------CHHHHHHHHHHCCCCEE---CCCCCCCCHHHHHHHH
T ss_conf 8989999999975167899627----------------------72899999974798645---4888764879999999
Q ss_pred HHHHHHHCCCCHHHCCCCEEEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 6887763263102118966999--84466543333222123332222222322235577442210137776420023430
Q gi|254780544|r 160 YIEHVKRTLPRDVTLQGLRIVV--DCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRAD 237 (448)
Q Consensus 160 Yi~~l~~~~~~~~~~~~lkvvv--D~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad 237 (448)
| . +.+.+. .+++++|++ |+.|.++.. +-.++..+|.++..+. |.+ ..|..+.+....+..+..+..
T Consensus 144 ~-T-i~e~~g---~l~gl~i~~vGD~~nnVa~S-~~~~~~~lG~~v~~~~--P~~----~~p~~~~~~~~~~~~~~~g~~ 211 (331)
T PRK02102 144 M-T-MKEHFG---PLKGLKLAYLGDGRNNMANS-LLVGGAKLGMDVRICA--PKS----LWPEEELVAQAKEIAKETGAK 211 (331)
T ss_pred H-H-HHHHHC---CCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEEEEC--CCC----CCCCHHHHHHHHHHHHHHCCE
T ss_conf 9-9-999838---75677389978876424668-9999985598599975--864----488979999999999982993
Q ss_pred EEEEECC
Q ss_conf 3675315
Q gi|254780544|r 238 IGIALDG 244 (448)
Q Consensus 238 ~Gia~Dg 244 (448)
+-+..|.
T Consensus 212 i~~~~d~ 218 (331)
T PRK02102 212 ITITEDV 218 (331)
T ss_pred EEEEECH
T ss_conf 8999566
No 114
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=25.63 E-value=45 Score=13.65 Aligned_cols=88 Identities=18% Similarity=0.295 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 35425666887763263102118966999844665433332221233322222223222355774422101377764200
Q gi|254780544|r 153 VDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVH 232 (448)
Q Consensus 153 ~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~ 232 (448)
..+..+.|++++.+.- +.-+.+|+--+.+..-..+-..++|+.=-.+. +.+|+...+++++.|.+.
T Consensus 80 t~EA~~kYidfv~~~~-------d~PfliDSt~~~aR~aa~k~a~E~GladR~IY-----NSIn~s~~~eEieaL~es-- 145 (310)
T PRK00979 80 TGEAIEKYIDFVSEID-------DTPFLIDSTSGDARAAAAKYATEVGLADRAIY-----NSINMSIEEEEIEALKES-- 145 (310)
T ss_pred CHHHHHHHHHHHHHCC-------CCCEEECCCCHHHHHHHHHHHHHHCHHHHHHH-----HHCCCCCCHHHHHHHHHC--
T ss_conf 9899999988774046-------78757438867888999867665144677787-----506766798999999856--
Q ss_pred CCCCCEEEEECCCC----CCCCCCCC
Q ss_conf 23430367531552----10001332
Q gi|254780544|r 233 EVRADIGIALDGDG----DRVIIVDE 254 (448)
Q Consensus 233 ~~~ad~Gia~DgD~----DR~~ivd~ 254 (448)
..++.+.++||+-- .|+-++.+
T Consensus 146 di~aaIiLaFnp~dpsv~gr~~~l~~ 171 (310)
T PRK00979 146 DIDAAIVLAFNPMDPSVEGRLKMLED 171 (310)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99768998607999972346899870
No 115
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=25.52 E-value=38 Score=14.05 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=41.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCHH
Q ss_conf 333322212333222222232223557744221013777642002343036753155210-0013322375533113
Q gi|254780544|r 189 YKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDR-VIIVDEKGAIVNGDQI 264 (448)
Q Consensus 189 ~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR-~~ivd~~G~~i~~d~~ 264 (448)
+..+++..+++|++++++|.--........+..+-.+.+.+.++..+.-|.|.=.||-++ -.+...-.++=.||++
T Consensus 146 ~eWArKcVK~fGAdmvTiHlIsTdPk~~Dksp~EAaK~~EdvLQAVdvP~viGGSGnpeKDPlVLEkaAEvAEGeR~ 222 (401)
T TIGR00381 146 AEWARKCVKEFGADMVTIHLISTDPKVKDKSPKEAAKVLEDVLQAVDVPLVIGGSGNPEKDPLVLEKAAEVAEGERC 222 (401)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 35888888762766388644337885468872247889998763406775774788886675789988431136216
No 116
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=25.39 E-value=45 Score=13.62 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5433222111354256668877632631021189669998446654333322212333222222232
Q gi|254780544|r 143 CYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDK 209 (448)
Q Consensus 143 ~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~ 209 (448)
.|+.-|.......++..=+.++.+.+. .++++|| .|-++| ++++.+.+.++|++|+.+...
T Consensus 19 WWd~~g~~~~Lh~~N~~R~~~i~~~~~---~l~G~~I-LDVGCG--gG~lse~LAr~Ga~VtGID~S 79 (233)
T PRK05134 19 WWDPNGEFKPLHRINPLRLNYIREHAG---GLFGKRV-LDVGCG--GGILSESMARLGATVTGIDAS 79 (233)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCEE-EEECCC--CCHHHHHHHHCCCEEEEECCC
T ss_conf 479999960788836999999997514---6689989-997558--971128999679979998799
No 117
>pfam06804 Lipoprotein_18 NlpB/DapX lipoprotein. This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.
Probab=25.23 E-value=30 Score=14.73 Aligned_cols=91 Identities=11% Similarity=0.171 Sum_probs=43.7
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHH---HHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 9998446654333322212333222222232223557744-2210137776---42002343036753155210001332
Q gi|254780544|r 179 IVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLD-CGSTNVLSLQ---RKVHEVRADIGIALDGDGDRVIIVDE 254 (448)
Q Consensus 179 vvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~-~~~~~~~~l~---~~v~~~~ad~Gia~DgD~DR~~ivd~ 254 (448)
++++..+-.+..-++..|.++|.++...+...--.+.++. |+...-..+- -.+.+..+-|-+.=-|+.-.+.+.|+
T Consensus 202 liv~~pfd~~W~Rl~~aL~r~GFtV~Drdrs~G~~~V~Y~~p~s~~W~~lg~~~~~l~~g~Y~iqlgd~~n~Tsi~~~d~ 281 (303)
T pfam06804 202 LIARAPYNVLWQRLPAALPKMGFTITDRSQSQGTVKAKYASPDDESWQELGVKPPELKSGTYTFQLGDLGNRSSINFTDP 281 (303)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 99679299999999888987698787335566379999828981447763898778898846999831699317999889
Q ss_pred CCCCCCCCHHHHHHH
Q ss_conf 237553311356777
Q gi|254780544|r 255 KGAIVNGDQIMALIA 269 (448)
Q Consensus 255 ~G~~i~~d~~~~lla 269 (448)
+|+.++++.+-.|..
T Consensus 282 ~g~pl~~~~~~~l~~ 296 (303)
T pfam06804 282 KGKPLTEAQLKALVP 296 (303)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 979978999999999
No 118
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase; InterPro: IPR012767 This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis..
Probab=24.76 E-value=46 Score=13.55 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=14.8
Q ss_pred CCEEEEECCCC-CCEEEEEEEC-CCHHHHHHHHHHHHH
Q ss_conf 86599967798-2279999615-998999999999999
Q gi|254780544|r 406 IDRLIVRASGT-ESLIRIMAEG-DDLSRIKRIVDDLAK 441 (448)
Q Consensus 406 ~~w~liRpSgT-Ep~iriy~Ea-~~~~~~~~l~~~~~~ 441 (448)
++.|||=+.|- +|+-++|-.. .++...++.+...+.
T Consensus 402 v~~vLvD~~g~~~~L~~~~~~~~g~~~~~~~~~~~~K~ 439 (971)
T TIGR02401 402 VNGVLVDAEGEEEPLAALYRNVTGRPADIEETLRRAKR 439 (971)
T ss_pred HHHHCCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 02210357635728999999716881106999999999
No 119
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=24.74 E-value=46 Score=13.55 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 998999999999999987520
Q gi|254780544|r 427 DDLSRIKRIVDDLAKVIPMID 447 (448)
Q Consensus 427 ~~~~~~~~l~~~~~~~i~~i~ 447 (448)
++++.++++.+--+++.+.++
T Consensus 374 P~ee~l~~~~e~G~~~A~~lK 394 (395)
T PRK11921 374 PDDEALDRCRSFGENFAESLK 394 (395)
T ss_pred CCHHHHHHHHHHHHHHHHHHC
T ss_conf 998999999999999999861
No 120
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=24.34 E-value=47 Score=13.50 Aligned_cols=99 Identities=23% Similarity=0.228 Sum_probs=54.3
Q ss_pred EEEEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 69998446654--3333222123332222222322235577442210137776420023430367531552100013322
Q gi|254780544|r 178 RIVVDCANGAS--YKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEK 255 (448)
Q Consensus 178 kvvvD~~~G~~--~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~ad~Gia~DgD~DR~~ivd~~ 255 (448)
+||+..|.|+| +.++..+.....|+.-.+ -..|...|.+. |.+ .-++.+-
T Consensus 29 ~iv~~GmGGSGi~G~~~~~~~~~~~~~~Pvf-vv~DY~~p~~v------------------------~~~-~~lIAvS-- 80 (338)
T TIGR02128 29 EIVISGMGGSGIAGRILSELLLEKSFEVPVF-VVKDYRLPAFV------------------------DGK-TLLIAVS-- 80 (338)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCCCCEE-EECCCCCCCCC------------------------CCC-EEEEEEE--
T ss_conf 2278725657899999999865324788888-87077896988------------------------985-1799986--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 37553311356777765532002234333221136004443200121111123321
Q gi|254780544|r 256 GAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGD 311 (448)
Q Consensus 256 G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~ 311 (448)
.|||-.=.|.+-....++ +. =+.-++|..-|.++|++.|+++++.|-|+
T Consensus 81 ---YSGNT~ETl~~~e~A~~~---~~-~~~aITSGG~L~e~A~e~g~~~i~iP~G~ 129 (338)
T TIGR02128 81 ---YSGNTEETLSAVEEAKKK---GA-KVIAITSGGKLEEMAKEEGLDVIKIPKGL 129 (338)
T ss_pred ---CCCCHHHHHHHHHHHHHC---CC-CEEEEECCCHHHHHCCCCCCCEEEECCCC
T ss_conf ---178668999999999865---79-55999448538863011487568828861
No 121
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase; InterPro: IPR005785 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C-terminus side of the PlP-lysine. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE) (2.6.1.42 from EC). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family. ; GO: 0004084 branched-chain-amino-acid transaminase activity, 0009081 branched chain family amino acid metabolic process.
Probab=24.18 E-value=47 Score=13.48 Aligned_cols=85 Identities=20% Similarity=0.350 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCCCHHHHHH--HHHCCCCCCEEEEECCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 22235577442210137776--420023430367531552-------100013322375533113567777655320022
Q gi|254780544|r 209 KPNGININLDCGSTNVLSLQ--RKVHEVRADIGIALDGDG-------DRVIIVDEKGAIVNGDQIMALIAREWMSHSLLR 279 (448)
Q Consensus 209 ~pd~~~~~~~~~~~~~~~l~--~~v~~~~ad~Gia~DgD~-------DR~~ivd~~G~~i~~d~~~~lla~~ll~~~~~~ 279 (448)
.||-..++-.....|+-.+. .....+++|=+|..|.+| |=+.+| .+|.+++|-..-.+| +
T Consensus 144 ~~n~~pt~aKa~GnYlNS~LAk~EA~~~GydEAi~LD~~GYvaEGsGENIF~V-K~G~l~TPp~~~s~L----------~ 212 (302)
T TIGR01122 144 APNTIPTRAKAGGNYLNSILAKIEALRHGYDEAILLDVEGYVAEGSGENIFIV-KDGVLITPPVSSSIL----------K 212 (302)
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCEEEE-ECCEEECCCCHHHHC----------C
T ss_conf 78777622555513177899999996525207664579984876687627887-086787898704224----------8
Q ss_pred CCCCCCCCCCCCHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 3433322113600444320-0121111123321
Q gi|254780544|r 280 GNGIVTTVMSNIGLERFIA-GLGLSLKRTEVGD 311 (448)
Q Consensus 280 ~~~vv~~v~ss~~i~~~a~-~~g~~v~~t~vG~ 311 (448)
| | |=..+-++|+ .+|.+|.+.+.+-
T Consensus 213 G--I-----TRd~VitlA~ke~G~~V~E~~I~R 238 (302)
T TIGR01122 213 G--I-----TRDTVITLAKKELGIEVVEQRISR 238 (302)
T ss_pred C--C-----CHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 8--8-----888999998510862688233572
No 122
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=23.95 E-value=48 Score=13.45 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHCCCCC--CEEEEECCCCCCCCCCCCC--CC
Q ss_conf 6543333222123332222222322235577442210137776----42002343--0367531552100013322--37
Q gi|254780544|r 186 GASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQ----RKVHEVRA--DIGIALDGDGDRVIIVDEK--GA 257 (448)
Q Consensus 186 G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~----~~v~~~~a--d~Gia~DgD~DR~~ivd~~--G~ 257 (448)
+++++.=.++|+++|.+...+-..-|......+...++...|+ +.+.+... .+.++ ||.+.++|++ |+
T Consensus 8 AS~SPrR~elL~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~~~~~Vig----aDtvv~ldgrilgK 83 (193)
T COG0424 8 ASSSPRRRELLEQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARLPPDALVIG----ADTVVVLDGRILGK 83 (193)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE----CCEEEEECCEEECC
T ss_conf 46998999999987998198068999876657897999999999999999984799987996----27499989998269
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 553311356777765532002234333221136004443200121111123321101111
Q gi|254780544|r 258 IVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEY 317 (448)
Q Consensus 258 ~i~~d~~~~lla~~ll~~~~~~~~~vv~~v~ss~~i~~~a~~~g~~v~~t~vG~k~i~~~ 317 (448)
.-+.++-..++ .+- +|.. +.+.|...+-+-.+..-..+..|+|-|+.+.+.
T Consensus 84 P~~~~eA~~~L-----~~l--SG~~--h~v~T~v~li~~~~~~~~~~~~t~V~F~~ls~~ 134 (193)
T COG0424 84 PKDEEEAREML-----RKL--SGRT--HQVYTGVALIDPGKRVQSEVEVTKVRFRTLSDE 134 (193)
T ss_pred CCCHHHHHHHH-----HHH--CCCE--EEEEEEEEEEECCCEEEEEEEEEEEEECCCCHH
T ss_conf 99999999999-----984--6986--999999999977973899999789997559999
No 123
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=23.75 E-value=48 Score=13.43 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=11.1
Q ss_pred EEECCCCCCCC----CCCCCCCCCCCCCCCC
Q ss_conf 98446654333----3222123332222222
Q gi|254780544|r 181 VDCANGASYKV----APEVFWELGADVVVIG 207 (448)
Q Consensus 181 vD~~~G~~~~~----~~~il~~lg~~~~~i~ 207 (448)
.|+..|..+.- +.++.++.|.++..+.
T Consensus 106 ~Df~FG~~r~G~~~~L~~~~~~~~~~v~~i~ 136 (179)
T cd02064 106 FDFRFGKGRSGNAELLRELGEKYGFEVEIVP 136 (179)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCEEEEEC
T ss_conf 7302578988799999999987296499937
No 124
>PRK07952 DNA replication protein DnaC; Validated
Probab=23.72 E-value=48 Score=13.42 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=14.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 38999668779799999999999978987999
Q gi|254780544|r 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFI 75 (448)
Q Consensus 44 ~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~ 75 (448)
.++...+.-..--.++.+++..|+..|..|+.
T Consensus 98 gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf 129 (242)
T PRK07952 98 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLI 129 (242)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 17997899997899999999999987994999
No 125
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the bacterial proteins..
Probab=23.55 E-value=37 Score=14.14 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=32.0
Q ss_pred EEE-EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEE---EECCCCHHHHHH
Q ss_conf 015-5068778899999999999999972379983899966877979999999999997898799---962678089999
Q gi|254780544|r 11 IRG-KSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAF---ILGPIPSPAVAM 86 (448)
Q Consensus 11 iRG-~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~---~~g~~ptP~l~~ 86 (448)
+.| .-+ +-+++..+.+++.=+..+.+. +-.=.||||-=+= -|-.. +...|++=. .+|+..|=+-+.
T Consensus 13 L~g~~~~-f~ID~~~l~~iA~eik~~~~~-G~evgIViGGGNI------fRG~~--~~~~Gi~R~~aDymGMLATviNgl 82 (236)
T TIGR02075 13 LAGKDSQ-FGIDPKRLNRIANEIKEVVKK-GIEVGIVIGGGNI------FRGKS--AAELGIDRVSADYMGMLATVINGL 82 (236)
T ss_pred HCCCCCC-CCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHH------HHHHH--HHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 2478888-642689999999999999867-9489999778278------87788--987489611143230589999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780544|r 87 LT 88 (448)
Q Consensus 87 a~ 88 (448)
+.
T Consensus 83 aL 84 (236)
T TIGR02075 83 AL 84 (236)
T ss_pred HH
T ss_conf 99
No 126
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=23.54 E-value=49 Score=13.40 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=26.0
Q ss_pred CCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCHH
Q ss_conf 96520--3358601550687788999999999999999723799838-99966877979
Q gi|254780544|r 1 MKRRF--FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRV-VIGKDTRLSGY 56 (448)
Q Consensus 1 m~r~l--FGt~GiRG~~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~v-vVg~D~R~~s~ 56 (448)
|.|.| .|..|| +.. | .+.+++.|++.. .+++| +||||....|-
T Consensus 1 m~~~iaiyGKGGI----GKS--T--Tt~NLaaALA~l-----~GkrVl~IgcDPk~dST 46 (275)
T PRK13233 1 MTRKIAIYGKGGI----GKS--T--TTQNTAAAMAHF-----HDKKVFIHGCDPKADST 46 (275)
T ss_pred CCCEEEEECCCCC----CHH--H--HHHHHHHHHHHH-----CCCEEEEECCCCCCCHH
T ss_conf 9738999899854----465--4--599999999964-----79889997978876136
No 127
>pfam03900 Porphobil_deamC Porphobilinogen deaminase, C-terminal domain.
Probab=23.52 E-value=46 Score=13.53 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=24.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6753155210001332237553311356777765532
Q gi|254780544|r 239 GIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSH 275 (448)
Q Consensus 239 Gia~DgD~DR~~ivd~~G~~i~~d~~~~lla~~ll~~ 275 (448)
|+.+++||.+..-....|.+-++..++--+++.|+++
T Consensus 37 ~~v~s~DG~~~~~~~~~g~~~~a~~lG~~lA~~Ll~~ 73 (74)
T pfam03900 37 GLVGSPDGTRVFEIEVRGDIEDAEELGKKLAEELLAQ 73 (74)
T ss_pred EEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHC
T ss_conf 9999898988999999985899999999999999968
No 128
>PRK01215 competence damage-inducible protein A; Provisional
Probab=22.90 E-value=50 Score=13.33 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCC-----EEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89999987655430788659996779822-----7999961599899999999999998752
Q gi|254780544|r 390 SSIVQAIADAESELRGIDRLIVRASGTES-----LIRIMAEGDDLSRIKRIVDDLAKVIPMI 446 (448)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~w~liRpSgTEp-----~iriy~Ea~~~~~~~~l~~~~~~~i~~i 446 (448)
..+.+.+.+...+..+. .+--.|.+.|- -+|+.+.+.|++.++++++.+.+.|+++
T Consensus 192 S~la~~L~~l~~~~p~v-~i~syP~~~~~~~~~v~lrlta~a~~~~ea~~~i~~~~~~ire~ 252 (264)
T PRK01215 192 SDLAPYIKEVMKEYPRV-YVKSHPKGIEVSKPLLEIHVYASAESEEEAEEKVEKALERLREL 252 (264)
T ss_pred HHHHHHHHHHHHHCCCC-EEECCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999878997-48658975415677299999998099999999999999999999
No 129
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=22.87 E-value=41 Score=13.89 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=11.3
Q ss_pred HHHHHHCCCCEECCCCCCE
Q ss_conf 1111102897001346623
Q gi|254780544|r 314 IMEYMKNNGFNVGGEQSGH 332 (448)
Q Consensus 314 i~~~~~~~~~~~g~E~sg~ 332 (448)
.++.|+..+-++.||--|+
T Consensus 298 aakQM~~gGgm~~F~lKgg 316 (392)
T TIGR01328 298 AAKQMKKGGGMLAFELKGG 316 (392)
T ss_pred HHHHHHCCCCEEEEEECCC
T ss_conf 9998740487277543256
No 130
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.61 E-value=51 Score=13.29 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=11.9
Q ss_pred HHHHHHHCCCCCCEEEEECCCC
Q ss_conf 7776420023430367531552
Q gi|254780544|r 225 LSLQRKVHEVRADIGIALDGDG 246 (448)
Q Consensus 225 ~~l~~~v~~~~ad~Gia~DgD~ 246 (448)
..|.+.+++.+||||+.|=|.+
T Consensus 36 mklGdvM~~e~Ad~GiSFCGSG 57 (115)
T TIGR03577 36 MKLGDVMKQENADLGISFCGSG 57 (115)
T ss_pred CHHHHHHHHHCCCCCEEEECCC
T ss_conf 2077777653567235874589
No 131
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=22.37 E-value=51 Score=13.26 Aligned_cols=128 Identities=26% Similarity=0.414 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 87797999999999999789879996267808999999871992-58988654777520125640365456783578999
Q gi|254780544|r 51 TRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRAD-VGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRI 129 (448)
Q Consensus 51 ~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~~~-gGI~iTaSHNP~~~nGiK~~~~~G~~i~~~~~~~I 129 (448)
.|.++..+...+.+-....|..|+.+|..+ .++.-++..+... .++.|...|+|+ +.+++.+.|
T Consensus 29 ~rv~G~dl~~~ll~~~~~~~~~v~llG~~~-~~~~~~~~~l~~~yP~l~i~g~~~g~--------------f~~~e~~~i 93 (172)
T pfam03808 29 ERVAGTDLIPALLERAAERGKRVFLLGGKP-GVLEKAAARLRARYPGLRIVGTHDGY--------------FSPEEEEAI 93 (172)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHHHCCCCEEEEEECCC--------------CCHHHHHHH
T ss_conf 516859999999999986498389980888-99999999999887995599987999--------------986899999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9996156643344543322211135425666887763263102118966999844665433332221233322
Q gi|254780544|r 130 ETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGAD 202 (448)
Q Consensus 130 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~ 202 (448)
.+.+.+.....+ .=.+|.. -.+.++..+++..+..+.. ..--.+|..-|. ...+|+++.++|.+
T Consensus 94 ~~~I~~~~~div--~vglG~P-----kQE~~~~~~~~~~~~~v~~-~vGa~~d~~aG~-~~raP~w~~~~gLE 157 (172)
T pfam03808 94 IEAINASGPDLL--FVGLGAP-----KQEKWIARNRARLPVPVFI-GVGGSFDFLAGT-VKRAPKWMRKLGLE 157 (172)
T ss_pred HHHHHHCCCCEE--EEECCCC-----HHHHHHHHHHHHCCCCEEE-ECCCHHHHHHCC-CCCCCHHHHHHCCH
T ss_conf 999984599999--9956981-----7799999999877998798-524012466378-56477999995859
No 132
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=22.22 E-value=52 Score=13.24 Aligned_cols=86 Identities=17% Similarity=0.095 Sum_probs=51.7
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC---C-CHHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHH
Q ss_conf 06877889999999999999997237998389996687---7-979999999999997898799-962678089999998
Q gi|254780544|r 15 SNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTR---L-SGYMLENSLVAGFTAAGMDAF-ILGPIPSPAVAMLTR 89 (448)
Q Consensus 15 ~~~~~~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R---~-~s~~~~~~~~~gl~~~G~~V~-~~g~~ptP~l~~a~~ 89 (448)
+|. .+.+.+..+-.|- +..+++|++..-.. + ....+...+..-....++.|. .+.-+.+...-...-
T Consensus 21 fNv--~~~e~~~avi~AA------ee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~~~~ai 92 (283)
T pfam01116 21 FNV--NNLETINAVLEAA------EEANSPVIIQVSPGAAKYAGAEALAAMVRAAAEKYSVPVALHLDHGASFEGILEAI 92 (283)
T ss_pred EEE--CCHHHHHHHHHHH------HHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf 767--9899999999999------99699999996844675589999999999999977998999667779999999999
Q ss_pred HHCCCEEEEEEECCCCCCCE
Q ss_conf 71992589886547775201
Q gi|254780544|r 90 SLRADVGVMISASHNPYQDN 109 (448)
Q Consensus 90 ~~~~~gGI~iTaSHNP~~~n 109 (448)
+.++. .||+-+||-|.+.|
T Consensus 93 ~~Gft-SVM~DgS~l~~eeN 111 (283)
T pfam01116 93 EAGFS-SVMIDGSHLPFEEN 111 (283)
T ss_pred HHCCC-EEEEECCCCCHHHH
T ss_conf 81998-69863897999999
No 133
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.57 E-value=53 Score=13.16 Aligned_cols=56 Identities=27% Similarity=0.422 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHC-CCEEEEEEECCCCC
Q ss_conf 6877979999999999997898799962678089999998719-92589886547775
Q gi|254780544|r 50 DTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLR-ADVGVMISASHNPY 106 (448)
Q Consensus 50 D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~ptP~l~~a~~~~~-~~gGI~iTaSHNP~ 106 (448)
-.|..+..+...+.+-....+..|+.+|..+ .++.-+...+. .-.++.|..+|+|+
T Consensus 26 ~~rv~G~dl~~~ll~~~~~~~~~v~llG~~~-~~~~~~~~~l~~~yp~l~i~g~~~g~ 82 (171)
T cd06533 26 PERVTGSDLMPALLELAAQKGLRVFLLGAKP-EVLEKAAERLRARYPGLKIVGYHHGY 82 (171)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8626819999999999986497499980898-99999999999788993799987899
No 134
>PRK03442 consensus
Probab=21.36 E-value=54 Score=13.13 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=22.6
Q ss_pred EECCCCCCEEEEECCCCCCCCCC--CCCHHHHHHHHCCCCHHHH
Q ss_conf 00134662365301000144423--3202466777558888999
Q gi|254780544|r 324 NVGGEQSGHIILSDYGSTGDGLV--AALQVLRYIKQYDKPVSTI 365 (448)
Q Consensus 324 ~~g~E~sg~~~~~~~~~~~Dgi~--a~l~~le~l~~~~~~l~~l 365 (448)
.++.|.-|..++.....+.+.++ ++..+.++|.+.|.++.+|
T Consensus 163 ~Y~Iqg~g~~li~~I~Gd~~nVvGLPl~~l~~lL~~~G~~~~~~ 206 (213)
T PRK03442 163 GFTLDGLGGWFIDGVDGDPSNVIGLSLPLLRRLLQRVGLSVAAL 206 (213)
T ss_pred EEEECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 74341075750612288752024588999999999859985574
No 135
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=21.21 E-value=27 Score=15.01 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=9.7
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 860155068778899999999
Q gi|254780544|r 9 DGIRGKSNTFPITPNFMMRIG 29 (448)
Q Consensus 9 ~GiRG~~~~~~~t~~~v~~i~ 29 (448)
+++.|+.+-+.+.++...-+-
T Consensus 27 yDltGLsggf~i~~~~~~Lle 47 (346)
T TIGR03576 27 YDLTGLAGGFKIDEEDLELLE 47 (346)
T ss_pred CCCCCCCCCCCCCHHHHHHHH
T ss_conf 103445678443786888999
No 136
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=21.04 E-value=55 Score=13.09 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=5.9
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 6783578999999615
Q gi|254780544|r 120 KVSTDIEDRIETLLED 135 (448)
Q Consensus 120 ~i~~~~~~~Ie~~~~~ 135 (448)
.......++++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~ 35 (469)
T PTZ00079 20 NYEGLPDQEMNELYER 35 (469)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 6456508889999999
No 137
>pfam00864 P2X_receptor ATP P2X receptor.
Probab=20.66 E-value=56 Score=13.04 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=9.7
Q ss_pred CCCCEEEEECCCCCH
Q ss_conf 998389996687797
Q gi|254780544|r 41 KHRRVVIGKDTRLSG 55 (448)
Q Consensus 41 ~~~~vvVg~D~R~~s 55 (448)
...++|+-+|-|..-
T Consensus 4 ~T~K~V~iks~rvG~ 18 (374)
T pfam00864 4 ETPKSVVIKSKKVGI 18 (374)
T ss_pred CCCEEEEEEEEEEEH
T ss_conf 664599997257329
No 138
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=20.35 E-value=51 Score=13.30 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHCCCEEEEE
Q ss_conf 9999999999789879996
Q gi|254780544|r 58 LENSLVAGFTAAGMDAFIL 76 (448)
Q Consensus 58 ~~~~~~~gl~~~G~~V~~~ 76 (448)
.+..++--|.+.|+.|+|+
T Consensus 86 vs~~~~p~~l~~g~~ViDL 104 (361)
T TIGR01850 86 VSMELAPELLEAGVKVIDL 104 (361)
T ss_pred HHHHHHHHHHHCCCEEEEC
T ss_conf 5699999998479869988
No 139
>PRK12681 cysB transcriptional regulator CysB; Reviewed
Probab=20.20 E-value=57 Score=12.98 Aligned_cols=196 Identities=16% Similarity=0.200 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 78089999998719925898865477752012564036545678--3578999999615664334454332221113542
Q gi|254780544|r 79 IPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVS--TDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGV 156 (448)
Q Consensus 79 ~ptP~l~~a~~~~~~~gGI~iTaSHNP~~~nGiK~~~~~G~~i~--~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (448)
++-|.+|..++.+....| +++|..+|..+. .+..+.+-...++- +..
T Consensus 28 iSQPavS~qIk~LE~eLG--------------v~LF~R~gr~l~~LT~aG~~l~~~a~~i----L~~------------- 76 (324)
T PRK12681 28 TSQPGISKQVRMLEDELG--------------IQIFARSGKHLTQVTPAGEEIIRIAREI----LSK------------- 76 (324)
T ss_pred CCHHHHHHHHHHHHHHHC--------------CEEEEECCCCCCCCCHHHHHHHHHHHHH----HHH-------------
T ss_conf 977799999999999849--------------9618988998886098899999999999----999-------------
Q ss_pred HHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 56668877632631021189669998446654333322212333222222232223557744221013777642002343
Q gi|254780544|r 157 HDRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRA 236 (448)
Q Consensus 157 ~~~Yi~~l~~~~~~~~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~~~~~~l~~~v~~~~a 236 (448)
++.+++....-.....-++-|-+.+..+..++|.++.++--.. |+ .+.+-...+...+.+.+.+..+
T Consensus 77 ----~~~i~~~~~~~~~~~~G~L~Ia~~~t~a~~~LP~~i~~F~~~~------P~---v~l~l~~~~~~~i~~~l~~g~~ 143 (324)
T PRK12681 77 ----VESIKSVAGEHTWPDKGSLYIATTHTQARYALPPVIKGFIKRY------PR---VSLHMHQGSPTQIAEAAAKGEA 143 (324)
T ss_pred ----HHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHC------CC---CCEEEEECCHHHHHHHHHCCCC
T ss_conf ----9999999997528876349998535888877259999999878------99---8446531787999999987998
Q ss_pred CEEEEECCCC--CCCC----------CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHCCCC
Q ss_conf 0367531552--1000----------1332237553311356777765532002234333221--136004443200121
Q gi|254780544|r 237 DIGIALDGDG--DRVI----------IVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTV--MSNIGLERFIAGLGL 302 (448)
Q Consensus 237 d~Gia~DgD~--DR~~----------ivd~~G~~i~~d~~~~lla~~ll~~~~~~~~~vv~~v--~ss~~i~~~a~~~g~ 302 (448)
|+|++.++-. +.+. ++-..+..+....-.. ...+... +-|..+. ..-..+++..++.|.
T Consensus 144 DlaI~~e~~~~~~dl~~~P~~~~~~~vvvp~~HPLa~~~~it--l~dL~~~-----plI~~~~g~~~R~~id~~f~~~g~ 216 (324)
T PRK12681 144 DFAIATEALHLYDDLIMLPCYHWNRSVVVPPDHPLAKKKKLT--IEELAQY-----PLVTYVFGFTGRSELDTAFNRAGL 216 (324)
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC--HHHHCCC-----CEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 723124666668874686400032224579999655799999--9998699-----859614998299999999998899
Q ss_pred CCCC-CCCCCCCHHHHHHCCCCEE
Q ss_conf 1111-2332110111110289700
Q gi|254780544|r 303 SLKR-TEVGDRYIMEYMKNNGFNV 325 (448)
Q Consensus 303 ~v~~-t~vG~k~i~~~~~~~~~~~ 325 (448)
+... ..+........|.+.+..+
T Consensus 217 ~P~iv~e~~~~~~I~~~V~~GlGV 240 (324)
T PRK12681 217 TPRIVFTATDADVIKTYVRLGLGV 240 (324)
T ss_pred CCEEEEEECCHHHHHHHHHHCCEE
T ss_conf 760799989899999999959913
No 140
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=20.16 E-value=57 Score=12.98 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHHHHHHHCCCE--EEEECCCC-HHHHHHHH
Q ss_conf 889999999999999997237998389996687797--99999999999978987--99962678-08999999
Q gi|254780544|r 20 ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSG--YMLENSLVAGFTAAGMD--AFILGPIP-SPAVAMLT 88 (448)
Q Consensus 20 ~t~~~v~~i~~a~~~~~~~~~~~~~vvVg~D~R~~s--~~~~~~~~~gl~~~G~~--V~~~g~~p-tP~l~~a~ 88 (448)
+-+.++.++...+. .......++.||-|.|..+ ..+...+.. +...|++ ++.+.... +=+-+|.-
T Consensus 32 lP~~Ll~~~~~~~~---~~~~~~~~lAi~iD~R~~~~~~~~~~~~~~-l~~~~~~~~ilFLdA~~~~LirRy~e 101 (284)
T pfam03668 32 LPPQLLPRLVDFLL---AAGSRISSVAVVMDVRNRPFSGDLDEQRNE-LATRAITPRILFLEADDDTLVRRYSD 101 (284)
T ss_pred CCHHHHHHHHHHHH---HCCCCCCEEEEEEECCCCCCHHHHHHHHHH-HHHCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 89999999999986---247876526899963665333769999999-98669982699997880899998887
No 141
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.15 E-value=57 Score=12.98 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 989999999999999
Q gi|254780544|r 428 DLSRIKRIVDDLAKV 442 (448)
Q Consensus 428 ~~~~~~~l~~~~~~~ 442 (448)
+.+.+++++..+.+.
T Consensus 326 ~~~~~~all~~lq~~ 340 (342)
T COG3317 326 TGDQADALLAVLQAA 340 (342)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 388999999999986
No 142
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.05 E-value=51 Score=13.26 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=18.4
Q ss_pred CCHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCCCCE
Q ss_conf 600444320012111112332-11011111028970
Q gi|254780544|r 290 NIGLERFIAGLGLSLKRTEVG-DRYIMEYMKNNGFN 324 (448)
Q Consensus 290 s~~i~~~a~~~g~~v~~t~vG-~k~i~~~~~~~~~~ 324 (448)
+..+.+-|.-+|...+.+--| --++-+.+.+.+.+
T Consensus 260 ggTMarEaAlLGtpaIs~~pGkll~vdk~lie~G~~ 295 (346)
T COG1817 260 GGTMAREAALLGTPAISCYPGKLLAVDKYLIEKGLL 295 (346)
T ss_pred CCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHCCCE
T ss_conf 703788888728834785388533223898866843
No 143
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.03 E-value=53 Score=13.16 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE--CCC
Q ss_conf 8389996687797999999999999789879996--267
Q gi|254780544|r 43 RRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL--GPI 79 (448)
Q Consensus 43 ~~vvVg~D~R~~s~~~~~~~~~gl~~~G~~V~~~--g~~ 79 (448)
..-+=+|...|+...+.+.++.- ..|...+.+ |+.
T Consensus 51 ~g~~YsR~gNPT~~~lE~~la~L--Egg~~a~~~sSGma 87 (432)
T PRK06702 51 EGYIYTRIGNPTLAAFEQKLAEL--EGGVGAVATASGQA 87 (432)
T ss_pred CCCEECCCCCHHHHHHHHHHHHH--HCCCCEEEECHHHH
T ss_conf 89603189986799999999998--39982898532899
Done!