HHsearch alignment for GI: 254780544 and conserved domain: pfam02879

Probab=99.85  E-value=7.5e-22  Score=154.27  Aligned_cols=99  Identities=36%  Similarity=0.543  Sum_probs=88.9

Q ss_pred             HHHHHHHHHCCCCH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCC
Q ss_conf             66688776326310-21189669998446654333322212333222222232223557744221---013777642002
Q gi|254780544|r  158 DRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS---TNVLSLQRKVHE  233 (448)
Q Consensus       158 ~~Yi~~l~~~~~~~-~~~~~lkvvvD~~~G~~~~~~~~il~~lg~~~~~i~~~pd~~~~~~~~~~---~~~~~l~~~v~~  233 (448)
T Consensus         1 ~~Y~~~l~~~i~~~~i~~~~lkv~vD~~~G~~~~~~~~ll~~lg~~~~~~~~~~d~~f~~~~p~P~~~~~l~~~~~~v~~   80 (103)
T pfam02879         1 DAYIDRLASAFDLEALKKRGLKVVYDPLHGVGGEILPELLKRLGAEVVEENCEPDGDFPTKAPNPEEPEALELLIELVKE   80 (103)
T ss_pred             CHHHHHHHHHCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             97899999867999971689889997788635899999999869989994365699879929399845479999998744


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             34303675315521000133223
Q gi|254780544|r  234 VRADIGIALDGDGDRVIIVDEKG  256 (448)
Q Consensus       234 ~~ad~Gia~DgD~DR~~ivd~~G  256 (448)
T Consensus        81 ~~ad~g~a~DgDaDR~~~vd~~G  103 (103)
T pfam02879        81 VGADLGIAFDGDADRLGVVDEKG  103 (103)
T ss_pred             CCCEEEEEECCCCCEEEEECCCC
T ss_conf             39769999878876179967999