BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (448 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 448

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/448 (100%), Positives = 448/448 (100%)

Query: 1   MKRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLEN 60
           MKRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLEN
Sbjct: 1   MKRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLEN 60

Query: 61  SLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYK 120
           SLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYK
Sbjct: 61  SLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYK 120

Query: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIV 180
           VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIV
Sbjct: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIV 180

Query: 181 VDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGI 240
           VDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGI
Sbjct: 181 VDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGI 240

Query: 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGL 300
           ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGL
Sbjct: 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGL 300

Query: 301 GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDK 360
           GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDK
Sbjct: 301 GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDK 360

Query: 361 PVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLI 420
           PVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLI
Sbjct: 361 PVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLI 420

Query: 421 RIMAEGDDLSRIKRIVDDLAKVIPMIDS 448
           RIMAEGDDLSRIKRIVDDLAKVIPMIDS
Sbjct: 421 RIMAEGDDLSRIKRIVDDLAKVIPMIDS 448


>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 542

 Score = 76.3 bits (186), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 155/367 (42%), Gaps = 62/367 (16%)

Query: 7   GTDGIRGKSNTF---PITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63
           GT G+R K + F     T NF+  I   V          + +V+G D R   +++   ++
Sbjct: 17  GTSGLRKKVSVFQQNSYTENFIQAIFNNV------DCAEKTLVVGGDGRFYNHIVIQKII 70

Query: 64  AGFTAAGMDAFILGP---IPSPAVAMLTRSLRADVGVMISASHNP---YQDNGIKLFGPD 117
               A G    I+G    + +PAV+ L R  +A  G++++ASHNP    QD GIK     
Sbjct: 71  KIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSS 130

Query: 118 GYKVSTDIEDRIETLLEDD--LTSYLSCYDSIGHAKRVDGVH-----------------D 158
           G   S   E + E + E+   +TSY      I  A  VD  H                 +
Sbjct: 131 GGSAS---EQQTEDIFEESKKITSY-----QIIEANDVDINHIGTKELANMTISVIDPIE 182

Query: 159 RYIEHVKRTLPRDVTLQ----GLRIVVDCANGASYKVAPEVFW-ELGADVVVIGDKPNGI 213
            Y+  ++     D   +    G RI +DC N  +   A E+   +LGA     G   N I
Sbjct: 183 NYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPT---GSVRNFI 239

Query: 214 NINLDCGST----NVLSLQ----RKVHEVRADIGIALDGDGDRVIIVDEKGAIVN-GDQI 264
            +  D G      N++  +    R +    AD G A DGDGDR +I+  KG  VN  D +
Sbjct: 240 PLE-DFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILG-KGIFVNPSDSL 297

Query: 265 MALIAREWMSHSLLRG-NGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGF 323
             ++A   +      G  G+  ++ ++  L+R    L L L  T  G ++    ++N   
Sbjct: 298 AIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMI 357

Query: 324 NVGGEQS 330
            + GE+S
Sbjct: 358 TICGEES 364


>gi|254780325|ref|YP_003064738.1| mutator MutT protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 141

 Score = 24.6 bits (52), Expect = 3.6,   Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 365 ICHCFEEYPQ 374
           +CHCFE  PQ
Sbjct: 94  VCHCFEGIPQ 103


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate synthase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 23.9 bits (50), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 246 GDRVIIVDEKGAIVNGDQIMALIAR--EWMSHSLLRGNGIVTTVM-SNIGLERFIAGLGL 302
           G  VI++    +I +   +M +     E M   +L+   +   VM S +   RF    G 
Sbjct: 232 GAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGT 291

Query: 303 SLKRTEVGDRYIMEYMKN 320
            +KR ++GD   ++ M+N
Sbjct: 292 KIKRKDIGDTMRIDLMEN 309


>gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 211

 Score = 23.9 bits (50), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 245 DGDRVIIVDEKGAIVNGDQIMALIAREWMS 274
           D D V I   KG   N DQ+  LI  +W++
Sbjct: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80


>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 23.9 bits (50), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 290 NIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGF 323
           NI LERFI  LG+     E+       Y+    F
Sbjct: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 23.5 bits (49), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 230 KVHEVRADIGIALDGDGDRVIIVDEKGAIV 259
           K++E+ A + +    D D++I+V +KG ++
Sbjct: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLI 863


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 23.5 bits (49), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 142 SCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQ 175
           + YD I  A   +G++   ++ + RTL   V LQ
Sbjct: 385 NIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQ 418


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.140    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,704
Number of Sequences: 1233
Number of extensions: 12384
Number of successful extensions: 36
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 11
length of query: 448
length of database: 328,796
effective HSP length: 77
effective length of query: 371
effective length of database: 233,855
effective search space: 86760205
effective search space used: 86760205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)