BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter asiaticus str. psy62] (448 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 448 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/448 (100%), Positives = 448/448 (100%) Query: 1 MKRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLEN 60 MKRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLEN Sbjct: 1 MKRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLEN 60 Query: 61 SLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYK 120 SLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYK Sbjct: 61 SLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYK 120 Query: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIV 180 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIV Sbjct: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIV 180 Query: 181 VDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGI 240 VDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGI Sbjct: 181 VDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGI 240 Query: 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGL 300 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGL Sbjct: 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGL 300 Query: 301 GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDK 360 GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDK Sbjct: 301 GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDK 360 Query: 361 PVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLI 420 PVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLI Sbjct: 361 PVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLI 420 Query: 421 RIMAEGDDLSRIKRIVDDLAKVIPMIDS 448 RIMAEGDDLSRIKRIVDDLAKVIPMIDS Sbjct: 421 RIMAEGDDLSRIKRIVDDLAKVIPMIDS 448 >gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62] Length = 542 Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 155/367 (42%), Gaps = 62/367 (16%) Query: 7 GTDGIRGKSNTF---PITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63 GT G+R K + F T NF+ I V + +V+G D R +++ ++ Sbjct: 17 GTSGLRKKVSVFQQNSYTENFIQAIFNNV------DCAEKTLVVGGDGRFYNHIVIQKII 70 Query: 64 AGFTAAGMDAFILGP---IPSPAVAMLTRSLRADVGVMISASHNP---YQDNGIKLFGPD 117 A G I+G + +PAV+ L R +A G++++ASHNP QD GIK Sbjct: 71 KIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSS 130 Query: 118 GYKVSTDIEDRIETLLEDD--LTSYLSCYDSIGHAKRVDGVH-----------------D 158 G S E + E + E+ +TSY I A VD H + Sbjct: 131 GGSAS---EQQTEDIFEESKKITSY-----QIIEANDVDINHIGTKELANMTISVIDPIE 182 Query: 159 RYIEHVKRTLPRDVTLQ----GLRIVVDCANGASYKVAPEVFW-ELGADVVVIGDKPNGI 213 Y+ ++ D + G RI +DC N + A E+ +LGA G N I Sbjct: 183 NYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPT---GSVRNFI 239 Query: 214 NINLDCGST----NVLSLQ----RKVHEVRADIGIALDGDGDRVIIVDEKGAIVN-GDQI 264 + D G N++ + R + AD G A DGDGDR +I+ KG VN D + Sbjct: 240 PLE-DFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILG-KGIFVNPSDSL 297 Query: 265 MALIAREWMSHSLLRG-NGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGF 323 ++A + G G+ ++ ++ L+R L L L T G ++ ++N Sbjct: 298 AIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMI 357 Query: 324 NVGGEQS 330 + GE+S Sbjct: 358 TICGEES 364 >gi|254780325|ref|YP_003064738.1| mutator MutT protein [Candidatus Liberibacter asiaticus str. psy62] Length = 141 Score = 24.6 bits (52), Expect = 3.6, Method: Composition-based stats. Identities = 7/10 (70%), Positives = 8/10 (80%) Query: 365 ICHCFEEYPQ 374 +CHCFE PQ Sbjct: 94 VCHCFEGIPQ 103 >gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 405 Score = 23.9 bits (50), Expect = 5.8, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 246 GDRVIIVDEKGAIVNGDQIMALIAR--EWMSHSLLRGNGIVTTVM-SNIGLERFIAGLGL 302 G VI++ +I + +M + E M +L+ + VM S + RF G Sbjct: 232 GAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGT 291 Query: 303 SLKRTEVGDRYIMEYMKN 320 +KR ++GD ++ M+N Sbjct: 292 KIKRKDIGDTMRIDLMEN 309 >gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] Length = 211 Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 245 DGDRVIIVDEKGAIVNGDQIMALIAREWMS 274 D D V I KG N DQ+ LI +W++ Sbjct: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 15/34 (44%) Query: 290 NIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGF 323 NI LERFI LG+ E+ Y+ F Sbjct: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 23.5 bits (49), Expect = 7.7, Method: Compositional matrix adjust. Identities = 9/30 (30%), Positives = 20/30 (66%) Query: 230 KVHEVRADIGIALDGDGDRVIIVDEKGAIV 259 K++E+ A + + D D++I+V +KG ++ Sbjct: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLI 863 >gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 142 SCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQ 175 + YD I A +G++ ++ + RTL V LQ Sbjct: 385 NIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQ 418 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.140 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,704 Number of Sequences: 1233 Number of extensions: 12384 Number of successful extensions: 36 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 11 length of query: 448 length of database: 328,796 effective HSP length: 77 effective length of query: 371 effective length of database: 233,855 effective search space: 86760205 effective search space used: 86760205 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)