HHsearch alignment for GI: 254780545 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.88 E-value=2.1e-08 Score=79.88 Aligned_cols=146 Identities=27% Similarity=0.403 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------------------
Q ss_conf 8985288999999999874335676642012333110037874258889999742469----------------------
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---------------------- 206 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---------------------- 206 (647)
T Consensus 2 ~~~~~~~~~~~l~~~~~---~------~-~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQAL---E------S-GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CCCCCHHHHHHHHHHHH---H------C-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 64332358999999998---6------5-888761003799999789999999999658664334552002244432025
Q ss_pred --CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf --970205857886444203324599999999873----78012063235641445578988626889889989985303
Q gi|254780545|r 207 --VPFFTISGSDFVELFVGVGASRVRDMFEQAKNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG 280 (647)
Q Consensus 207 --~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg 280 (647)
T Consensus 72 ~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lE- 134 (325)
T COG0470 72 NHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLE- 134 (325)
T ss_pred CCCCEEEECCCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--------------HHHHHHHHHCC-
T ss_conf 6886599773213333--006999999998604465667726999732032698--------------88876754332-
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 235778299996298100883331656423141000134788999
Q gi|254780545|r 281 FESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREH 325 (647)
Q Consensus 281 ~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~ 325 (647)
T Consensus 135 -ep~~~~~~il~~n~~~~il~tI~S--R-c~~i~f~~~~~~~~i~ 175 (325)
T COG0470 135 -EPPKNTRFILITNDPSKILPTIRS--R-CQRIRFKPPSRLEAIA 175 (325)
T ss_pred -CCCCCEEEEEEECCHHHCHHHHHH--H-EEEEECCCCCHHHHHH
T ss_conf -488871699974985556478775--6-0788767741889999