HHsearch alignment for GI: 254780545 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.24 E-value=6e-10 Score=90.96 Aligned_cols=126 Identities=29% Similarity=0.457 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCHHHHHHH
Q ss_conf 8898528899999999987433567664201233----3110037874258889999742469---97020585788644
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP----HGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISGSDFVEL 220 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p----~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~s~~~~~ 220 (647)
T Consensus 491 ~rViGQd~AV~~v~~aIr-------raRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIR-------RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred CCEECHHHHHHHHHHHHH-------HHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHH
T ss_conf 650173999999999999-------9856999999873578866788656999999999996599744455456877778
Q ss_pred ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC--
Q ss_conf ------------420332459999999987378012063235641445578988626889889989985303-2-357--
Q gi|254780545|r 221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS-- 284 (647)
Q Consensus 221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~-- 284 (647)
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEK-----------AH---pdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEK-----------AH---PDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHHCCCCCCCEECCC--CCHHHHHHCCCCEEEEECHHHH-----------CC---HHHHHHHHHHHCCCCEECCCC
T ss_conf 7799872799987200655--4003766069986888412644-----------08---899999999846780554899
Q ss_pred -----CCEEEEEECCCC
Q ss_conf -----782999962981
Q gi|254780545|r 285 -----EGVILIAATNRP 296 (647)
Q Consensus 285 -----~~v~vi~aTn~~ 296 (647)
T Consensus 628 r~VdFrNtiIImTSN~G 644 (786)
T COG0542 628 RTVDFRNTIIIMTSNAG 644 (786)
T ss_pred CEEECCEEEEEEECCCC
T ss_conf 88843002899845026