HHsearch alignment for GI: 254780545 and conserved domain: COG1067
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones].
Probab=96.64 E-value=0.015 Score=37.49 Aligned_cols=223 Identities=26% Similarity=0.299 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC----CCCHHHHHHHHHHHCC-------------
Q ss_conf 42256988985288999999999874335676642012333110037----8742588899997424-------------
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVG----PPGTGKTLLARAVAGE------------- 204 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~G----ppGtGKTlla~a~a~e------------- 204 (647)
T Consensus 98 ~~~~~~~~~~~~k~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~ 171 (647)
T COG1067 98 GRPESFSELLGQKAEEKAEYL--SYLI----LLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPK 171 (647)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 687225799985636788777--7666----8876224666665404553462167789988887653125310333045
Q ss_pred --------CCCCEECCCHHHHHHHHH------HCC------HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCC
Q ss_conf --------699702058578864442------033------245999999998737801206323564144557898862
Q gi|254780545|r 205 --------ANVPFFTISGSDFVELFV------GVG------ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN 264 (647)
Q Consensus 205 --------~~~~f~~~~~s~~~~~~~------g~g------~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~ 264 (647)
T Consensus 172 ~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~p-GaVHkAng-GVLiIdei~lL~~~--------- 240 (647)
T COG1067 172 NFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKP-GAVHKANG-GVLIIDEIGLLAQP--------- 240 (647)
T ss_pred HHHHCCCCCCCCEEECCCCCHHHCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCC-CEEEEEHHHHHCCH---------
T ss_conf 56540235589679668777465361277768887667888642367-61101258-47999756632839---------
Q ss_pred HHHHHHHHHHHHHHC-C-------CCCC-----------CCEEEEEECCCCCC-----CCHHHCCCCCCCC--EEEECHH
Q ss_conf 688988998998530-3-------2357-----------78299996298100-----8833316564231--4100013
Q gi|254780545|r 265 DEREQTLNQLLVEMD-G-------FESS-----------EGVILIAATNRPDV-----LDAALLRPGRFDR--QITVPNP 318 (647)
Q Consensus 265 ~e~~~~ln~ll~~md-g-------~~~~-----------~~v~vi~aTn~~~~-----lD~al~RpgRfd~--~i~~~~P 318 (647)
T Consensus 241 -----~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~ 313 (647)
T COG1067 241 -----LQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMP 313 (647)
T ss_pred -----HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHH--HCCEEEEECCCCC
T ss_conf -----899999999824456657674024861578885565489940889999765534777884--0556899768889
Q ss_pred -HHHHHHHHHHHHHCCCCCC---CCCC------HHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf -4788999999985488777---3211------0245441203------7989999999998764553202421045689
Q gi|254780545|r 319 -DIVGREHILMVHSRNVPLA---PNVI------LKTIARGTPG------FSGADLRNLVNEAALMAARRNRRLVTMQEFE 382 (647)
Q Consensus 319 -~~~~r~~i~~~~~~~~~~~---~~~d------~~~la~~t~g------~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~ 382 (647)
T Consensus 314 ~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve 393 (647)
T COG1067 314 ITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVE 393 (647)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 98689999999999999862899988889999999999986165650214899999999986688853786647699999
Q ss_pred HHHHHC
Q ss_conf 997501
Q gi|254780545|r 383 DAKDKI 388 (647)
Q Consensus 383 ~A~~rv 388 (647)
T Consensus 394 ~a~~~~ 399 (647)
T COG1067 394 EALQKR 399 (647)
T ss_pred HHHHHH
T ss_conf 999874