HHsearch alignment for GI: 254780545 and conserved domain: COG1219

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.13  E-value=6.2e-11  Score=98.10  Aligned_cols=144  Identities=26%  Similarity=0.388  Sum_probs=93.0

Q ss_pred             CCCCCCCCHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHH-HHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCCCCCEEC
Q ss_conf             00011242256988-985288999999999-874335676-64201233-311003787425888999974246997020
Q gi|254780545|r  136 KLLSGNVGSVTFKD-VAGVDEAKEDLQEIV-DFLCDPQKF-KRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEANVPFFT  211 (647)
Q Consensus       136 k~~~~~~~~v~f~d-v~g~~~~k~~~~~~v-~~l~~~~~~-~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~~~~f~~  211 (647)
T Consensus        48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFai  127 (408)
T COG1219          48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAI  127 (408)
T ss_pred             CCCCHHHHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             59986999998652432625431034664106889986048877635320317998889975779999999984898475


Q ss_pred             CCHHHHHH-HHHHCCHHHH-HHH-----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCCC
Q ss_conf             58578864-4420332459-999-----9999873780120632356414455789886268-898899899853032
Q gi|254780545|r  212 ISGSDFVE-LFVGVGASRV-RDM-----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDGF  281 (647)
Q Consensus       212 ~~~s~~~~-~~~g~g~~~v-r~l-----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg~  281 (647)
T Consensus       128 ADATtLTEAGYVGEDVENillkLlqaadydV~rAe-rGIIyIDEIDKIarkSen~SI-TRDVSGEGVQQALLKiiEGT  203 (408)
T COG1219         128 ADATTLTEAGYVGEDVENILLKLLQAADYDVERAE-RGIIYIDEIDKIARKSENPSI-TRDVSGEGVQQALLKIIEGT  203 (408)
T ss_pred             CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH-CCEEEEECHHHHHCCCCCCCC-CCCCCCHHHHHHHHHHHCCC
T ss_conf             14441210663550089999999987645888882-885998510254205789872-34367358999999997075