HHsearch alignment for GI: 254780545 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.13 E-value=6.2e-11 Score=98.10 Aligned_cols=144 Identities=26% Similarity=0.388 Sum_probs=93.0
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHH-HHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCCCCCEEC
Q ss_conf 00011242256988-985288999999999-874335676-64201233-311003787425888999974246997020
Q gi|254780545|r 136 KLLSGNVGSVTFKD-VAGVDEAKEDLQEIV-DFLCDPQKF-KRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEANVPFFT 211 (647)
Q Consensus 136 k~~~~~~~~v~f~d-v~g~~~~k~~~~~~v-~~l~~~~~~-~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~~~~f~~ 211 (647)
T Consensus 48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred CCCCHHHHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 59986999998652432625431034664106889986048877635320317998889975779999999984898475
Q ss_pred CCHHHHHH-HHHHCCHHHH-HHH-----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCCC
Q ss_conf 58578864-4420332459-999-----9999873780120632356414455789886268-898899899853032
Q gi|254780545|r 212 ISGSDFVE-LFVGVGASRV-RDM-----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDGF 281 (647)
Q Consensus 212 ~~~s~~~~-~~~g~g~~~v-r~l-----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg~ 281 (647)
T Consensus 128 ADATtLTEAGYVGEDVENillkLlqaadydV~rAe-rGIIyIDEIDKIarkSen~SI-TRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 128 ADATTLTEAGYVGEDVENILLKLLQAADYDVERAE-RGIIYIDEIDKIARKSENPSI-TRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH-CCEEEEECHHHHHCCCCCCCC-CCCCCCHHHHHHHHHHHCCC
T ss_conf 14441210663550089999999987645888882-885998510254205789872-34367358999999997075