HHsearch alignment for GI: 254780545 and conserved domain: COG1220

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].

Probab=99.01  E-value=1.3e-08  Score=81.32  Aligned_cols=90  Identities=33%  Similarity=0.551  Sum_probs=69.4

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf             6988-985288999999999874335676642012-----3331100378742588899997424699702058578864
Q gi|254780545|r  146 TFKD-VAGVDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE  219 (647)
Q Consensus       146 ~f~d-v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~  219 (647)
T Consensus        12 eLd~yIIGQ~~AKkaVA---IALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTE   88 (444)
T COG1220          12 ELDRYIIGQDEAKKAVA---IALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTE   88 (444)
T ss_pred             HHHHHHCCCHHHHHHHH---HHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf             98767407177788999---999989999754787762257553588888887688999999998489837887642134


Q ss_pred             H-HHHC-CHHHHHHHHHHHHH
Q ss_conf             4-4203-32459999999987
Q gi|254780545|r  220 L-FVGV-GASRVRDMFEQAKN  238 (647)
Q Consensus       220 ~-~~g~-g~~~vr~lf~~a~~  238 (647)
T Consensus        89 VGYVGrDVesivRDLve~av~  109 (444)
T COG1220          89 VGYVGRDVESIIRDLVEIAVK  109 (444)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             032564589999999999999