HHsearch alignment for GI: 254780545 and conserved domain: COG1223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=100.00 E-value=0 Score=441.78 Aligned_cols=242 Identities=37% Similarity=0.649 Sum_probs=225.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 11242256988985288999999999874335676642012333110037874258889999742469970205857886
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred HHHHCCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCC---CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHH
T ss_conf 5661366176641639888887999999649687634---5754168778999648799998725457854871168888
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG-DVs-EiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG-DVS-EIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCC-CHH-HHHHHHHHHCCCCCCCCCEEEEEECCCHHH
T ss_conf 877435989999999988751984998400245553045788645-499-999999985017445775699950598465
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHCCCCC
Q ss_conf 883331656423141000134788999999985488777321102454412037989999-9999987645532024210
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR-NLVNEAALMAARRNRRLVT 377 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~-~~~~eAa~~a~r~~~~~i~ 377 (647)
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~ 344 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVE 344 (368)
T ss_pred CCHHHHH--HHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 0788886--55650656488858999999998985897655689999998478772068999999999999871344433
Q ss_pred HHHHHHHHHH
Q ss_conf 4568999750
Q gi|254780545|r 378 MQEFEDAKDK 387 (647)
Q Consensus 378 ~~dl~~A~~r 387 (647)
T Consensus 345 ~edie~al~k 354 (368)
T COG1223 345 REDIEKALKK 354 (368)
T ss_pred HHHHHHHHHH
T ss_conf 8899999986