HHsearch alignment for GI: 254780545 and conserved domain: COG1855

>COG1855 ATPase (PilT family) [General function prediction only].
Probab=95.77  E-value=0.0052  Score=40.77  Aligned_cols=224  Identities=24%  Similarity=0.309  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
Q ss_conf             22569889852889999999998743356766420123331100378742588899997424699702058578864442
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFV  222 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~  222 (647)
T Consensus       242 vk~~ledY~L~dkl~eRL~e-----------------raeGILIAG~PGaGKsTFaqAlAe-----fy~~~Gk-iV----  294 (604)
T COG1855         242 VKLSLEDYGLSDKLKERLEE-----------------RAEGILIAGAPGAGKSTFAQALAE-----FYASQGK-IV----  294 (604)
T ss_pred             EEEEHHHCCCCHHHHHHHHH-----------------HHCCEEEECCCCCCHHHHHHHHHH-----HHHHCCC-EE----
T ss_conf             99605542879899999886-----------------416469956999974689999999-----9986696-88----


Q ss_pred             HCCHHHHHHH--HHHHHHHCCHHEEHHHH-HHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCEEEEEECCCCCC
Q ss_conf             0332459999--99998737801206323-564144557898862688988998998530-3235778299996298100
Q gi|254780545|r  223 GVGASRVRDM--FEQAKNNSPCIVFVDEI-DAVGRHRGIGLGGGNDEREQTLNQLLVEMD-GFESSEGVILIAATNRPDV  298 (647)
Q Consensus       223 g~g~~~vr~l--f~~a~~~~p~iifiDei-da~~~~r~~~~~~~~~e~~~~ln~ll~~md-g~~~~~~v~vi~aTn~~~~  298 (647)
T Consensus       295 K-TmEsPRDl~v~~eITQYs~l~g~me~t~DiLLLvRPDYT--IyDEmR~t-~DF~vyaDmRLAGVGMVGVVHATrpIDA  370 (604)
T COG1855         295 K-TMESPRDLQVSPEITQYSPLEGDMEKTADILLLVRPDYT--IYDEMRKT-EDFQVYADLRLAGVGMVGVVHATRPIDA  370 (604)
T ss_pred             E-ECCCCCCCCCCHHHHHCCCCCCCHHHHCCEEEEECCCCE--EHHHHHCC-CCEEEEEEEECCCCCEEEEEECCCHHHH
T ss_conf             6-324751356886663206445645552337999658845--10334156-6616766500115754768961780589


Q ss_pred             CCHHHCCCCCCCCEEEECH-HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8833316564231410001-347889999999854887773211024544120379899999999987645532024210
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPN-PDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT  377 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~-P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~  377 (647)
T Consensus       371 iQ-------R~igRVELG~IPqIvDT----VIfI~~G~V~kVy~ls~tVKVP~Gm~EeDLAR--------------PVIe  425 (604)
T COG1855         371 IQ-------RFIGRVELGMIPQIVDT----VIFIKDGEVAKVYELSYTVKVPTGMTEEDLAR--------------PVIE  425 (604)
T ss_pred             HH-------HHHCCEEECCCCCCEEE----EEEEECCEEEEEEEEEEEEECCCCCCHHHHCC--------------CEEE
T ss_conf             99-------86440631466412268----99981881889999999997678878677158--------------5389


Q ss_pred             HHHHHHH---HHHCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHCCC
Q ss_conf             4568999---7501368655676668667---78999999999999985058
Q gi|254780545|r  378 MQEFEDA---KDKILMGAERRSTAMTEEE---KKITAYHEAGHAVVACHVPK  423 (647)
Q Consensus       378 ~~dl~~A---~~rv~~G~ek~~~~~~~~e---k~~vAyHEAGHAlva~~l~~  423 (647)
T Consensus       426 VrDfeTg~~eYEIYtfGEqvvVvPv~~~~~~~~~~~a~~~i~~~i-~r~~p~  476 (604)
T COG1855         426 VRDFETGELEYEIYTFGEQVVVVPVKEEEESPALKLAEEEIEREI-KRYLPG  476 (604)
T ss_pred             EEECCCCCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HHHCCC
T ss_conf             765036854689997164799997568777726677999999999-974799