HHsearch alignment for GI: 254780545 and conserved domain: COG1855
>COG1855 ATPase (PilT family) [General function prediction only].
Probab=95.77 E-value=0.0052 Score=40.77 Aligned_cols=224 Identities=24% Similarity=0.309 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
Q ss_conf 22569889852889999999998743356766420123331100378742588899997424699702058578864442
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFV 222 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~ 222 (647)
T Consensus 242 vk~~ledY~L~dkl~eRL~e-----------------raeGILIAG~PGaGKsTFaqAlAe-----fy~~~Gk-iV---- 294 (604)
T COG1855 242 VKLSLEDYGLSDKLKERLEE-----------------RAEGILIAGAPGAGKSTFAQALAE-----FYASQGK-IV---- 294 (604)
T ss_pred EEEEHHHCCCCHHHHHHHHH-----------------HHCCEEEECCCCCCHHHHHHHHHH-----HHHHCCC-EE----
T ss_conf 99605542879899999886-----------------416469956999974689999999-----9986696-88----
Q ss_pred HCCHHHHHHH--HHHHHHHCCHHEEHHHH-HHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCEEEEEECCCCCC
Q ss_conf 0332459999--99998737801206323-564144557898862688988998998530-3235778299996298100
Q gi|254780545|r 223 GVGASRVRDM--FEQAKNNSPCIVFVDEI-DAVGRHRGIGLGGGNDEREQTLNQLLVEMD-GFESSEGVILIAATNRPDV 298 (647)
Q Consensus 223 g~g~~~vr~l--f~~a~~~~p~iifiDei-da~~~~r~~~~~~~~~e~~~~ln~ll~~md-g~~~~~~v~vi~aTn~~~~ 298 (647)
T Consensus 295 K-TmEsPRDl~v~~eITQYs~l~g~me~t~DiLLLvRPDYT--IyDEmR~t-~DF~vyaDmRLAGVGMVGVVHATrpIDA 370 (604)
T COG1855 295 K-TMESPRDLQVSPEITQYSPLEGDMEKTADILLLVRPDYT--IYDEMRKT-EDFQVYADLRLAGVGMVGVVHATRPIDA 370 (604)
T ss_pred E-ECCCCCCCCCCHHHHHCCCCCCCHHHHCCEEEEECCCCE--EHHHHHCC-CCEEEEEEEECCCCCEEEEEECCCHHHH
T ss_conf 6-324751356886663206445645552337999658845--10334156-6616766500115754768961780589
Q ss_pred CCHHHCCCCCCCCEEEECH-HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8833316564231410001-347889999999854887773211024544120379899999999987645532024210
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPN-PDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT 377 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~-P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~ 377 (647)
T Consensus 371 iQ-------R~igRVELG~IPqIvDT----VIfI~~G~V~kVy~ls~tVKVP~Gm~EeDLAR--------------PVIe 425 (604)
T COG1855 371 IQ-------RFIGRVELGMIPQIVDT----VIFIKDGEVAKVYELSYTVKVPTGMTEEDLAR--------------PVIE 425 (604)
T ss_pred HH-------HHHCCEEECCCCCCEEE----EEEEECCEEEEEEEEEEEEECCCCCCHHHHCC--------------CEEE
T ss_conf 99-------86440631466412268----99981881889999999997678878677158--------------5389
Q ss_pred HHHHHHH---HHHCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHCCC
Q ss_conf 4568999---7501368655676668667---78999999999999985058
Q gi|254780545|r 378 MQEFEDA---KDKILMGAERRSTAMTEEE---KKITAYHEAGHAVVACHVPK 423 (647)
Q Consensus 378 ~~dl~~A---~~rv~~G~ek~~~~~~~~e---k~~vAyHEAGHAlva~~l~~ 423 (647)
T Consensus 426 VrDfeTg~~eYEIYtfGEqvvVvPv~~~~~~~~~~~a~~~i~~~i-~r~~p~ 476 (604)
T COG1855 426 VRDFETGELEYEIYTFGEQVVVVPVKEEEESPALKLAEEEIEREI-KRYLPG 476 (604)
T ss_pred EEECCCCCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HHHCCC
T ss_conf 765036854689997164799997568777726677999999999-974799