HHsearch alignment for GI: 254780545 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=97.97  E-value=4.5e-05  Score=55.73  Aligned_cols=150  Identities=29%  Similarity=0.430  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHH----H
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246---99702058578----8
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSD----F  217 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~----~  217 (647)
T Consensus       138 ~~~~~liG~S~am~~l~~~i~------kv----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l  207 (464)
T COG2204         138 SLGGELVGESPAMQQLRRLIA------KV----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL  207 (464)
T ss_pred             CCCCCCCCCCHHHHHHHHHHH------HH----HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH
T ss_conf             556775206999999999999------98----47799789977898758999999986074458992563346489888


Q ss_pred             HH-HHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCCC
Q ss_conf             64-4420------33245-99999999873780120632356414455789886268898899899853-----032357
Q gi|254780545|r  218 VE-LFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFESS  284 (647)
Q Consensus       218 ~~-~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~~  284 (647)
T Consensus       208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl----------~--~Q~--kLLRvLqe~~~~rvG~~  270 (464)
T COG2204         208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPL----------E--LQV--KLLRVLQEREFERVGGN  270 (464)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEEC---CCCEEEEECCCCCCH----------H--HHH--HHHHHHHCCEEEECCCC
T ss_conf             777761456567677643457615773---796587323110999----------9--999--99999870706735888


Q ss_pred             ----CCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH
Q ss_conf             ----782999962981008833316564231-------4100013478899
Q gi|254780545|r  285 ----EGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE  324 (647)
Q Consensus       285 ----~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~  324 (647)
T Consensus       271 ~~i~vdvRiIaaT~~dL---~~~v~~G~FReDLyyRLnV~~i~iPpLRER~  318 (464)
T COG2204         271 KPIKVDVRIIAATNRDL---EEEVAAGRFREDLYYRLNVVPLRLPPLRERK  318 (464)
T ss_pred             CEECEEEEEEEECCCCH---HHHHHCCCCHHHHHHHHCCCEECCCCCCCCC
T ss_conf             60000169996057789---9998819737888865233110487622362