HHsearch alignment for GI: 254780545 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=97.97 E-value=4.5e-05 Score=55.73 Aligned_cols=150 Identities=29% Similarity=0.430 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHH----H
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246---99702058578----8
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSD----F 217 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~----~ 217 (647)
T Consensus 138 ~~~~~liG~S~am~~l~~~i~------kv----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIA------KV----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred CCCCCCCCCCHHHHHHHHHHH------HH----HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH
T ss_conf 556775206999999999999------98----47799789977898758999999986074458992563346489888
Q ss_pred HH-HHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCCC
Q ss_conf 64-4420------33245-99999999873780120632356414455789886268898899899853-----032357
Q gi|254780545|r 218 VE-LFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFESS 284 (647)
Q Consensus 218 ~~-~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~~ 284 (647)
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl----------~--~Q~--kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPL----------E--LQV--KLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEC---CCCEEEEECCCCCCH----------H--HHH--HHHHHHHCCEEEECCCC
T ss_conf 777761456567677643457615773---796587323110999----------9--999--99999870706735888
Q ss_pred ----CCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH
Q ss_conf ----782999962981008833316564231-------4100013478899
Q gi|254780545|r 285 ----EGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE 324 (647)
Q Consensus 285 ----~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~ 324 (647)
T Consensus 271 ~~i~vdvRiIaaT~~dL---~~~v~~G~FReDLyyRLnV~~i~iPpLRER~ 318 (464)
T COG2204 271 KPIKVDVRIIAATNRDL---EEEVAAGRFREDLYYRLNVVPLRLPPLRERK 318 (464)
T ss_pred CEECEEEEEEEECCCCH---HHHHHCCCCHHHHHHHHCCCEECCCCCCCCC
T ss_conf 60000169996057789---9998819737888865233110487622362