HHsearch alignment for GI: 254780545 and conserved domain: COG3283
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism].
Probab=95.90 E-value=0.0082 Score=39.34 Aligned_cols=139 Identities=31% Similarity=0.466 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH---
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246---9970205857886---
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV--- 218 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~--- 218 (647)
T Consensus 195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAP----LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~ 270 (511)
T COG3283 195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAP----LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDA 270 (511)
T ss_pred CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCC----EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
T ss_conf 12575424477873039999999999865403787----68744888618899998744384558973676447796667
Q ss_pred ---HHHH-HCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCCC-C---CC----C
Q ss_conf ---4442-0332459999999987378012063235641445578988626889889989985-3032-3---57----7
Q gi|254780545|r 219 ---ELFV-GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDGF-E---SS----E 285 (647)
Q Consensus 219 ---~~~~-g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg~-~---~~----~ 285 (647)
T Consensus 271 aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp------------~lQa--KLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 271 AESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP------------RLQA--KLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred HHHHHHCCCCCCCCCCCHHHHCCC---CEEEEEHHHHCCH------------HHHH--HHHHHHCCCCCCCCCCCCEEEE
T ss_conf 677773568887776346340269---7488500332499------------8999--9999862776000377545787
Q ss_pred CEEEEEECCCC--CCCCHHHCCCCCC
Q ss_conf 82999962981--0088333165642
Q gi|254780545|r 286 GVILIAATNRP--DVLDAALLRPGRF 309 (647)
Q Consensus 286 ~v~vi~aTn~~--~~lD~al~RpgRf 309 (647)
T Consensus 334 dVRVIcatq~nL~~lv~-----~g~f 354 (511)
T COG3283 334 DVRVICATQVNLVELVQ-----KGKF 354 (511)
T ss_pred EEEEEECCCCCHHHHHH-----CCCH
T ss_conf 78999616666999986-----3725