HHsearch alignment for GI: 254780545 and conserved domain: COG5245

Probab=97.59  E-value=0.00013  Score=52.38  Aligned_cols=203  Identities=22%  Similarity=0.234  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHCCCCCCEEECCCCCHHHHHH-HHHHHCCCCCCEECCCHHHHH
Q ss_conf             6988985288999999---9998743---35676642012333110037874258889-999742469970205857886
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQ---EIVDFLC---DPQKFKRLGGRIPHGVLLVGPPGTGKTLL-ARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~---~~v~~l~---~~~~~~~~g~~~p~g~ll~GppGtGKTll-a~a~a~e~~~~f~~~~~s~~~  218 (647)
T Consensus      1453 ~~~~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~- 1531 (3164)
T COG5245        1453 NNGSIAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTC- 1531 (3164)
T ss_pred             CCCCCCCCEECHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCHHHHHHHHEEEEEEEECCC-
T ss_conf             3666677010102430467731245331319989999874063499978999751011263666543001567751124-


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCC---------------HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             44420332459999999987378---------------012063235641445578988626889889989985303235
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSP---------------CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES  283 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p---------------~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~  283 (647)
T Consensus      1532 ----t~T~s~ls~Ler~t-~yy~~tg~~~l~PK~~vK~lVLFcDeIn-L--p~~~~y~~~~vI--~FlR~-l~e~QGfw~ 1600 (3164)
T COG5245        1532 ----TMTPSKLSVLERET-EYYPNTGVVRLYPKPVVKDLVLFCDEIN-L--PYGFEYYPPTVI--VFLRP-LVERQGFWS 1600 (3164)
T ss_pred             ----CCCHHHHHHHHHHC-EEECCCCEEEECCCCCHHHEEEEEECCC-C--CCCCCCCCCCEE--EEEHH-HHHHCCCCC
T ss_conf             ----57788999998640-1523688279766742132178731147-7--420013897448--86287-787525555


Q ss_pred             C--------CCEEEEEECCCCCCCCHH-HCCCCCCCC---EEEECHHHHHHHHHHHHHHHCCCCC-CCCCC--HHHHHHH
Q ss_conf             7--------782999962981008833-316564231---4100013478899999998548877-73211--0245441
Q gi|254780545|r  284 S--------EGVILIAATNRPDVLDAA-LLRPGRFDR---QITVPNPDIVGREHILMVHSRNVPL-APNVI--LKTIARG  348 (647)
Q Consensus       284 ~--------~~v~vi~aTn~~~~lD~a-l~RpgRfd~---~i~~~~P~~~~r~~i~~~~~~~~~~-~~~~d--~~~la~~  348 (647)
T Consensus      1601 s~~~~wvTI~~i~l~Gacnp~t--d~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~a 1678 (3164)
T COG5245        1601 SIAVSWVTICGIILYGACNPGT--DEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSA 1678 (3164)
T ss_pred             CHHHHHHHHCCEEEECCCCCCC--CCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3666576211359983689999--96657527787468359996286334499999999998888459898877999888


Q ss_pred             ------------------HHCCCHHHHHHHHH
Q ss_conf             ------------------20379899999999
Q gi|254780545|r  349 ------------------TPGFSGADLRNLVN  362 (647)
Q Consensus       349 ------------------t~g~sgAdi~~~~~  362 (647)
T Consensus      1679 Sv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr 1710 (3164)
T COG5245        1679 SVELYLSSKDKTKFFLQMNYGYKPRELTRSLR 1710 (3164)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             89999999886523200000337378889999