HHsearch alignment for GI: 254780545 and conserved domain: KOG0477
>KOG0477 consensus.
Probab=97.15 E-value=0.0064 Score=40.10 Aligned_cols=138 Identities=25% Similarity=0.376 Sum_probs=69.6
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCC-HHHHHHHHHHCCHHHHHH-----HHHHHHH---HCCHHEEHHHHHHHH
Q ss_conf 1100378742588899997424699702058-578864442033245999-----9999987---378012063235641
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTIS-GSDFVELFVGVGASRVRD-----MFEQAKN---NSPCIVFVDEIDAVG 253 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~-~s~~~~~~~g~g~~~vr~-----lf~~a~~---~~p~iifiDeida~~ 253 (647)
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA----SavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMn 559 (854)
T KOG0477 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA----SAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMN 559 (854)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCC----CCCCEEEEEEECCCCCEEEECCCEEEECCCCEEEEEHHHHHC
T ss_conf 2898469982289999999862753168506775----433326887517865303651672897268537741211204
Q ss_pred CCCCCCCCCCCHHHHH-HHH----HHHHHHCCCCCCCCEEEEEECCC--------------CCCCCHHHCCCCCCCCEEE
Q ss_conf 4455789886268898-899----89985303235778299996298--------------1008833316564231410
Q gi|254780545|r 254 RHRGIGLGGGNDEREQ-TLN----QLLVEMDGFESSEGVILIAATNR--------------PDVLDAALLRPGRFDRQIT 314 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~-~ln----~ll~~mdg~~~~~~v~vi~aTn~--------------~~~lD~al~RpgRfd~~i~ 314 (647)
T Consensus 560 dq---DRtSIHEAMEQQSISISKAGIVtsLqA-----rctvIAAanPigGRY~~s~tFaqNV~ltePIlS---RFDiLcV 628 (854)
T KOG0477 560 DQ---DRTSIHEAMEQQSISISKAGIVTSLQA-----RCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS---RFDILCV 628 (854)
T ss_pred CC---CCCHHHHHHHHCCHHHHHHHHHHHHHH-----HHHHHEECCCCCCCCCCCCCHHHCCCCCCCHHH---HCCEEEE
T ss_conf 01---101599998751201446668998875-----544300027777756875114330554444121---1132456
Q ss_pred EC---HHHHHHH--HHHHHHHHCCCC
Q ss_conf 00---1347889--999999854887
Q gi|254780545|r 315 VP---NPDIVGR--EHILMVHSRNVP 335 (647)
Q Consensus 315 ~~---~P~~~~r--~~i~~~~~~~~~ 335 (647)
T Consensus 629 vkD~vd~~~De~lA~fVV~Sh~r~hp 654 (854)
T KOG0477 629 VKDTVDPVQDEKLAKFVVGSHVRHHP 654 (854)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 40355813678899999876740487