HHsearch alignment for GI: 254780545 and conserved domain: KOG0478
>KOG0478 consensus.
Probab=97.46 E-value=0.0017 Score=44.31 Aligned_cols=119 Identities=29% Similarity=0.383 Sum_probs=66.2
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHHHHHHHCCHHHHH-----HHHHHHHH---HCCHHEEHHHHHHH
Q ss_conf 311003787425888999974246997-0205857886444203324599-----99999987---37801206323564
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFVELFVGVGASRVR-----DMFEQAKN---NSPCIVFVDEIDAV 252 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~~~~~g~g~~~vr-----~lf~~a~~---~~p~iifiDeida~ 252 (647)
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsS----avGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSS----AVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----HHCCEEEEEECCCCCEEEEECCCEEECCCCEEECHHHHHH
T ss_conf 228994699867899999999747754040587630----2200356776576554665048489728965771123333
Q ss_pred -HCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCC--CCCCEEEEEECCC------C-----C--CCCHHHCCCC
Q ss_conf -144557898862688988998998530---------323--5778299996298------1-----0--0883331656
Q gi|254780545|r 253 -GRHRGIGLGGGNDEREQTLNQLLVEMD---------GFE--SSEGVILIAATNR------P-----D--VLDAALLRPG 307 (647)
Q Consensus 253 -~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~--~~~~v~vi~aTn~------~-----~--~lD~al~Rpg 307 (647)
T Consensus 539 ~dStr---------------SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS-- 601 (804)
T KOG0478 539 SDSTR---------------SVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS-- 601 (804)
T ss_pred HHHHH---------------HHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHH--
T ss_conf 27788---------------9999999876311743022342166530344535432457999762321678805643--
Q ss_pred CCCCEE-EECHHHHH
Q ss_conf 423141-00013478
Q gi|254780545|r 308 RFDRQI-TVPNPDIV 321 (647)
Q Consensus 308 Rfd~~i-~~~~P~~~ 321 (647)
T Consensus 602 RFDLIylllD~~DE~ 616 (804)
T KOG0478 602 RFDLIFLLLDKPDER 616 (804)
T ss_pred HHCEEEEEECCCCHH
T ss_conf 233789984275326