HHsearch alignment for GI: 254780545 and conserved domain: KOG0741
>KOG0741 consensus.
Probab=99.06 E-value=5.5e-09 Score=84.01 Aligned_cols=139 Identities=30% Similarity=0.469 Sum_probs=95.1
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCC
Q ss_conf 333110037874258889999742469970205857886444203324----5999999998737801206323564144
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRH 255 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~ 255 (647)
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe---~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE---DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHH---HHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCC
T ss_conf 6358998669988768899999752799847973778---7037466788999999888763386508998155656200
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCCCHH-HCCCCCCCCEEEECHHHH-HHHHHHHH
Q ss_conf 557898862688988998998530323577--82999962981008833-316564231410001347-88999999
Q gi|254780545|r 256 RGIGLGGGNDEREQTLNQLLVEMDGFESSE--GVILIAATNRPDVLDAA-LLRPGRFDRQITVPNPDI-VGREHILM 328 (647)
Q Consensus 256 r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~--~v~vi~aTn~~~~lD~a-l~RpgRfd~~i~~~~P~~-~~r~~i~~ 328 (647)
T Consensus 614 vpIGPR----fSN~vlQaL~VllK~-~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741 614 VPIGPR----FSNLVLQALLVLLKK-QPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred CCCCCC----HHHHHHHHHHHHHCC-CCCCCCEEEEEECCCHHHHHHHCCHHH--HHHHEEECCCCCCHHHHHHHHH
T ss_conf 246840----357999999999524-898884599996240799999727787--5111054675686478999999