HHsearch alignment for GI: 254780545 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.71 E-value=1e-15 Score=132.79 Aligned_cols=225 Identities=24% Similarity=0.333 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
T Consensus 22 ~~l~efiGQ~~i~~~L~v~i~Aak-------~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek----- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAK-------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK----- 89 (328)
T ss_pred CCHHHCCCHHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC-----
T ss_conf 857663595999999999999999-------64999880576588998899999999998688815624500167-----
Q ss_pred CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCCC----------------CCE
Q ss_conf 3245999999998737801206323564144557898862688988998-99853032357----------------782
Q gi|254780545|r 225 GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQ-LLVEMDGFESS----------------EGV 287 (647)
Q Consensus 225 g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~-ll~~mdg~~~~----------------~~v 287 (647)
T Consensus 90 -~~DL~~iLt~l~~--~dvLFIDEIHRl~~---------------~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pF 151 (328)
T PRK00080 90 -AGDLAALLTNLEE--GDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -HHHHHHHHHHCCC--CCEEEEHHHHHCCH---------------HHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCE
T ss_conf -4789999960887--87676506532488---------------89988579877523457864786532455589983
Q ss_pred EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999962981008833316564231410001347889999999854--887773211024544120379899999999987
Q gi|254780545|r 288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAA 365 (647)
Q Consensus 288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa 365 (647)
T Consensus 152 TLIGATTr~g~Ls~PLrd--RFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~-~~~eIA~rSRG-TPRiAnrLLrRvr 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGIEIDEE-GALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred EEEECCCCCCCCCHHHHH--HCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHCCC-CCHHHHHHHHHHH
T ss_conf 474013676657767897--5793366345899999999999999839887899-99999986389-8399999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 645532024210456899975013686556766686677899
Q gi|254780545|r 366 LMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKIT 407 (647)
Q Consensus 366 ~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~v 407 (647)
T Consensus 228 Dfa~v~~~~~I~~~~~~~aL~~l~I----D~~GLd~~Dr~~L 265 (328)
T PRK00080 228 DFAQVKGDGIITREIADKALDMLGV----DELGLDEMDRKYL 265 (328)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCC----CCCCCCHHHHHHH
T ss_conf 9999837996599999999995698----6348998899999