HHsearch alignment for GI: 254780545 and conserved domain: PRK00080

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.71  E-value=1e-15  Score=132.79  Aligned_cols=225  Identities=24%  Similarity=0.333  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV  224 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~  224 (647)
T Consensus        22 ~~l~efiGQ~~i~~~L~v~i~Aak-------~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek-----   89 (328)
T PRK00080         22 KSLDEFIGQEKVKENLKIFIEAAK-------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-----   89 (328)
T ss_pred             CCHHHCCCHHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC-----
T ss_conf             857663595999999999999999-------64999880576588998899999999998688815624500167-----


Q ss_pred             CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCCC----------------CCE
Q ss_conf             3245999999998737801206323564144557898862688988998-99853032357----------------782
Q gi|254780545|r  225 GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQ-LLVEMDGFESS----------------EGV  287 (647)
Q Consensus       225 g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~-ll~~mdg~~~~----------------~~v  287 (647)
T Consensus        90 -~~DL~~iLt~l~~--~dvLFIDEIHRl~~---------------~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pF  151 (328)
T PRK00080         90 -AGDLAALLTNLEE--GDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF  151 (328)
T ss_pred             -HHHHHHHHHHCCC--CCEEEEHHHHHCCH---------------HHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCE
T ss_conf             -4789999960887--87676506532488---------------89988579877523457864786532455589983


Q ss_pred             EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             999962981008833316564231410001347889999999854--887773211024544120379899999999987
Q gi|254780545|r  288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAA  365 (647)
Q Consensus       288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa  365 (647)
T Consensus       152 TLIGATTr~g~Ls~PLrd--RFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~-~~~eIA~rSRG-TPRiAnrLLrRvr  227 (328)
T PRK00080        152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGIEIDEE-GALEIARRSRG-TPRIANRLLRRVR  227 (328)
T ss_pred             EEEECCCCCCCCCHHHHH--HCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHCCC-CCHHHHHHHHHHH
T ss_conf             474013676657767897--5793366345899999999999999839887899-99999986389-8399999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             645532024210456899975013686556766686677899
Q gi|254780545|r  366 LMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKIT  407 (647)
Q Consensus       366 ~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~v  407 (647)
T Consensus       228 Dfa~v~~~~~I~~~~~~~aL~~l~I----D~~GLd~~Dr~~L  265 (328)
T PRK00080        228 DFAQVKGDGIITREIADKALDMLGV----DELGLDEMDRKYL  265 (328)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHCCC----CCCCCCHHHHHHH
T ss_conf             9999837996599999999995698----6348998899999