HHsearch alignment for GI: 254780545 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=98.52 E-value=4.5e-07 Score=70.19 Aligned_cols=194 Identities=28% Similarity=0.385 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH-----HH
Q ss_conf 889852889999999998743356766420123331100378742588899997424---6997020585788-----64
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF-----VE 219 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~-----~~ 219 (647)
T Consensus 186 ~elIG~S~~m~~l~~~i~~v----------A~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~Es 255 (510)
T PRK05022 186 GEMIGQSPAMQQLKKEIEVV----------AASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAES 255 (510)
T ss_pred CCEEECCHHHHHHHHHHHHH----------HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 97520899999999999999----------68999889889898139999999996688789985788899998567899
Q ss_pred HHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-C-C---CC----
Q ss_conf 4420------33245-999999998737801206323564144557898862688988998998530-3-2---35----
Q gi|254780545|r 220 LFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD-G-F---ES---- 283 (647)
Q Consensus 220 ~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md-g-~---~~---- 283 (647)
T Consensus 256 eLFGh~kGaFtGA~~~r~G~fe~A~---gGTLfLDEI~~Lpl~-----------~-Q--~KLLrvLq~g~iqrvG~~~~~ 318 (510)
T PRK05022 256 ELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLA-----------L-Q--AKLLRVLQYGEIQRVGSDRSL 318 (510)
T ss_pred HHCCCCCCCCCCCCCCCCCCEEECC---CCEEEEECHHHCCHH-----------H-H--HHHHHHHHCCEEEECCCCCEE
T ss_conf 8659777886886556788101778---987987574549999-----------9-9--999999847958855899466
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHH-HHH---HHHHCCC--CCC---CCCCHHHHHH
Q ss_conf 778299996298100883331656423-------14100013478899-999---9985488--777---3211024544
Q gi|254780545|r 284 SEGVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGRE-HIL---MVHSRNV--PLA---PNVILKTIAR 347 (647)
Q Consensus 284 ~~~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~-~i~---~~~~~~~--~~~---~~~d~~~la~ 347 (647)
T Consensus 319 ~vdvRIIAATnrd--L-~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~ 395 (510)
T PRK05022 319 RVDVRVIAATNRD--L-REEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAA 395 (510)
T ss_pred EEEEEEEEECCCC--H-HHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 6668999607835--9-999883963899998762040348086555540999999999999998298989888999999
Q ss_pred H-HHCCCH--HHHHHHHHHHHHHHHHH
Q ss_conf 1-203798--99999999987645532
Q gi|254780545|r 348 G-TPGFSG--ADLRNLVNEAALMAARR 371 (647)
Q Consensus 348 ~-t~g~sg--Adi~~~~~eAa~~a~r~ 371 (647)
T Consensus 396 L~~Y~WPGNVRELenvIeRA~lla~~~ 422 (510)
T PRK05022 396 LLQYDWPGNVRELEHVISRAALLARAR 422 (510)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 970999978999999999999971566