HHsearch alignment for GI: 254780545 and conserved domain: PRK05022

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=98.52  E-value=4.5e-07  Score=70.19  Aligned_cols=194  Identities=28%  Similarity=0.385  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH-----HH
Q ss_conf             889852889999999998743356766420123331100378742588899997424---6997020585788-----64
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF-----VE  219 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~-----~~  219 (647)
T Consensus       186 ~elIG~S~~m~~l~~~i~~v----------A~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~Es  255 (510)
T PRK05022        186 GEMIGQSPAMQQLKKEIEVV----------AASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAES  255 (510)
T ss_pred             CCEEECCHHHHHHHHHHHHH----------HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf             97520899999999999999----------68999889889898139999999996688789985788899998567899


Q ss_pred             HHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-C-C---CC----
Q ss_conf             4420------33245-999999998737801206323564144557898862688988998998530-3-2---35----
Q gi|254780545|r  220 LFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD-G-F---ES----  283 (647)
Q Consensus       220 ~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md-g-~---~~----  283 (647)
T Consensus       256 eLFGh~kGaFtGA~~~r~G~fe~A~---gGTLfLDEI~~Lpl~-----------~-Q--~KLLrvLq~g~iqrvG~~~~~  318 (510)
T PRK05022        256 ELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLA-----------L-Q--AKLLRVLQYGEIQRVGSDRSL  318 (510)
T ss_pred             HHCCCCCCCCCCCCCCCCCCEEECC---CCEEEEECHHHCCHH-----------H-H--HHHHHHHHCCEEEECCCCCEE
T ss_conf             8659777886886556788101778---987987574549999-----------9-9--999999847958855899466


Q ss_pred             CCCEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHH-HHH---HHHHCCC--CCC---CCCCHHHHHH
Q ss_conf             778299996298100883331656423-------14100013478899-999---9985488--777---3211024544
Q gi|254780545|r  284 SEGVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGRE-HIL---MVHSRNV--PLA---PNVILKTIAR  347 (647)
Q Consensus       284 ~~~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~-~i~---~~~~~~~--~~~---~~~d~~~la~  347 (647)
T Consensus       319 ~vdvRIIAATnrd--L-~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~  395 (510)
T PRK05022        319 RVDVRVIAATNRD--L-REEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAA  395 (510)
T ss_pred             EEEEEEEEECCCC--H-HHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             6668999607835--9-999883963899998762040348086555540999999999999998298989888999999


Q ss_pred             H-HHCCCH--HHHHHHHHHHHHHHHHH
Q ss_conf             1-203798--99999999987645532
Q gi|254780545|r  348 G-TPGFSG--ADLRNLVNEAALMAARR  371 (647)
Q Consensus       348 ~-t~g~sg--Adi~~~~~eAa~~a~r~  371 (647)
T Consensus       396 L~~Y~WPGNVRELenvIeRA~lla~~~  422 (510)
T PRK05022        396 LLQYDWPGNVRELEHVISRAALLARAR  422 (510)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             970999978999999999999971566