HHsearch alignment for GI: 254780545 and conserved domain: PRK05201

>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.

Probab=99.57  E-value=1.5e-13  Score=117.08  Aligned_cols=95  Identities=31%  Similarity=0.474  Sum_probs=70.0

Q ss_pred             CCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             11242256988-9852889999999998743356766420-----12333110037874258889999742469970205
Q gi|254780545|r  139 SGNVGSVTFKD-VAGVDEAKEDLQEIVDFLCDPQKFKRLG-----GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       139 ~~~~~~v~f~d-v~g~~~~k~~~~~~v~~l~~~~~~~~~g-----~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
T Consensus         5 tP~eIv~~LD~yIIGQ~~AKkavAVAl---rNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkv   81 (442)
T PRK05201          5 TPREIVSELDKYIIGQDDAKRAVAIAL---RNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (442)
T ss_pred             CHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             989999985360108277667877788---77787531662212334643168878888667899999999848985875


Q ss_pred             CHHHHHH-HHHHC-CHHHHHHHHHHH
Q ss_conf             8578864-44203-324599999999
Q gi|254780545|r  213 SGSDFVE-LFVGV-GASRVRDMFEQA  236 (647)
Q Consensus       213 ~~s~~~~-~~~g~-g~~~vr~lf~~a  236 (647)
T Consensus        82 eATk~TEvGYvGrDVEsiIrdLv~~a  107 (442)
T PRK05201         82 EATKFTEVGYVGRDVESIIRDLVEIA  107 (442)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             21310003435643788999999999