HHsearch alignment for GI: 254780545 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=99.34 E-value=3.2e-11 Score=100.16 Aligned_cols=173 Identities=18% Similarity=0.308 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH-
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246997020585788644420-
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG- 223 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g- 223 (647)
T Consensus 1 M~f~~iiGq~~i~~~L~~~i~-----------~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFRTIIGHENIKNRIDNSII-----------KGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPIN 69 (313)
T ss_pred CCHHHCCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf 983232682999999999998-----------799875043279998509999999999982899778898658863322
Q ss_pred ---CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf ---332459999999987378-----012063235641445578988626889889989985303235778299996298
Q gi|254780545|r 224 ---VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 224 ---~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
T Consensus 70 ~~~I~vd~IR~l~~~~~~-~p~~g~~KV~II~~ae~m~--------------~~AaNALLKtLE--EPP~~t~fIL~t~~ 132 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNK-KPYEGDKKVIIIYKSEKMT--------------EQAQNAFLKTIE--EPPKGVFIILLCEN 132 (313)
T ss_pred CCCCCHHHHHHHHHHHHH-CCCCCCCEEEEECCHHHHC--------------HHHHHHHHHCCC--CCCCCEEEEEEECC
T ss_conf 569998999999999840-8625895699980777758--------------999999845503--68998589986498
Q ss_pred CCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 100883331-656423141000134788999999985488777321102454412037
Q gi|254780545|r 296 PDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGF 352 (647)
Q Consensus 296 ~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~ 352 (647)
T Consensus 133 ~~~lLpTI~SRCQ~----~~f~~l~~~~i~~~L~~~~~~--~~~~-~~~~~~~~s~G~ 183 (313)
T PRK05564 133 LEQILDTIKSRCQI----YKLNRLSKEDIEKFISYKYND--IDEE-NKNSAIAFSDGI 183 (313)
T ss_pred HHHCCCHHHCCCEE----EECCCCCHHHHHHHHHHHCCC--CCHH-HHHHHHHHCCCC
T ss_conf 35475778706535----668998999999999986258--9999-999999982998