HHsearch alignment for GI: 254780545 and conserved domain: PRK05564

>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=99.34  E-value=3.2e-11  Score=100.16  Aligned_cols=173  Identities=18%  Similarity=0.308  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH-
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246997020585788644420-
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG-  223 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g-  223 (647)
T Consensus         1 M~f~~iiGq~~i~~~L~~~i~-----------~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~   69 (313)
T PRK05564          1 MSFRTIIGHENIKNRIDNSII-----------KGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPIN   69 (313)
T ss_pred             CCHHHCCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf             983232682999999999998-----------799875043279998509999999999982899778898658863322


Q ss_pred             ---CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             ---332459999999987378-----012063235641445578988626889889989985303235778299996298
Q gi|254780545|r  224 ---VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       224 ---~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
T Consensus        70 ~~~I~vd~IR~l~~~~~~-~p~~g~~KV~II~~ae~m~--------------~~AaNALLKtLE--EPP~~t~fIL~t~~  132 (313)
T PRK05564         70 KKSIGVDDIRNIIEEVNK-KPYEGDKKVIIIYKSEKMT--------------EQAQNAFLKTIE--EPPKGVFIILLCEN  132 (313)
T ss_pred             CCCCCHHHHHHHHHHHHH-CCCCCCCEEEEECCHHHHC--------------HHHHHHHHHCCC--CCCCCEEEEEEECC
T ss_conf             569998999999999840-8625895699980777758--------------999999845503--68998589986498


Q ss_pred             CCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             100883331-656423141000134788999999985488777321102454412037
Q gi|254780545|r  296 PDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGF  352 (647)
Q Consensus       296 ~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~  352 (647)
T Consensus       133 ~~~lLpTI~SRCQ~----~~f~~l~~~~i~~~L~~~~~~--~~~~-~~~~~~~~s~G~  183 (313)
T PRK05564        133 LEQILDTIKSRCQI----YKLNRLSKEDIEKFISYKYND--IDEE-NKNSAIAFSDGI  183 (313)
T ss_pred             HHHCCCHHHCCCEE----EECCCCCHHHHHHHHHHHCCC--CCHH-HHHHHHHHCCCC
T ss_conf             35475778706535----668998999999999986258--9999-999999982998