HHsearch alignment for GI: 254780545 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=98.36 E-value=2.7e-06 Score=64.54 Aligned_cols=133 Identities=25% Similarity=0.338 Sum_probs=92.1
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHHH-----CCHHHHHHHHHHH
Q ss_conf 123331100378742588899997424699-------7---------020585788644420-----3324599999999
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFVG-----VGASRVRDMFEQA 236 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~g-----~g~~~vr~lf~~a 236 (647)
T Consensus 19 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~ 98 (328)
T PRK05707 19 GRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFV 98 (328)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 98220464479998679999999999984899999899988889999875899987998426667769799999999998
Q ss_pred HHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCE
Q ss_conf 873----7801206323564144557898862688988998998530323577829999629810088333165642314
Q gi|254780545|r 237 KNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQ 312 (647)
Q Consensus 237 ~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~ 312 (647)
T Consensus 99 ~~~~~~g~~KV~iI~~Ae~m~--------------~~AaNALLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~ 159 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLE--EPSGQTVLLLISHQPSRLLPTIKS--RCQ-Q 159 (328)
T ss_pred HHCCCCCCCEEEEEEHHHHHC--------------HHHHHHHHHHHH--CCCCCEEEEEEECCHHHCHHHHHH--CCE-E
T ss_conf 317667895799950287738--------------999999999850--789875999860993448258874--141-3
Q ss_pred EEECHHHHHHHHHHHHH
Q ss_conf 10001347889999999
Q gi|254780545|r 313 ITVPNPDIVGREHILMV 329 (647)
Q Consensus 313 i~~~~P~~~~r~~i~~~ 329 (647)
T Consensus 160 ~~~~~p~~e~~~~~L~~ 176 (328)
T PRK05707 160 LACPLPSNEPSLQWLQQ 176 (328)
T ss_pred EECCCCCHHHHHHHHHH
T ss_conf 34899899999999997