HHsearch alignment for GI: 254780545 and conserved domain: PRK05707

>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=98.36  E-value=2.7e-06  Score=64.54  Aligned_cols=133  Identities=25%  Similarity=0.338  Sum_probs=92.1

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHHH-----CCHHHHHHHHHHH
Q ss_conf             123331100378742588899997424699-------7---------020585788644420-----3324599999999
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFVG-----VGASRVRDMFEQA  236 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~g-----~g~~~vr~lf~~a  236 (647)
T Consensus        19 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~   98 (328)
T PRK05707         19 GRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFV   98 (328)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             98220464479998679999999999984899999899988889999875899987998426667769799999999998


Q ss_pred             HHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCE
Q ss_conf             873----7801206323564144557898862688988998998530323577829999629810088333165642314
Q gi|254780545|r  237 KNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQ  312 (647)
Q Consensus       237 ~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~  312 (647)
T Consensus        99 ~~~~~~g~~KV~iI~~Ae~m~--------------~~AaNALLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~  159 (328)
T PRK05707         99 VQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLE--EPSGQTVLLLISHQPSRLLPTIKS--RCQ-Q  159 (328)
T ss_pred             HHCCCCCCCEEEEEEHHHHHC--------------HHHHHHHHHHHH--CCCCCEEEEEEECCHHHCHHHHHH--CCE-E
T ss_conf             317667895799950287738--------------999999999850--789875999860993448258874--141-3


Q ss_pred             EEECHHHHHHHHHHHHH
Q ss_conf             10001347889999999
Q gi|254780545|r  313 ITVPNPDIVGREHILMV  329 (647)
Q Consensus       313 i~~~~P~~~~r~~i~~~  329 (647)
T Consensus       160 ~~~~~p~~e~~~~~L~~  176 (328)
T PRK05707        160 LACPLPSNEPSLQWLQQ  176 (328)
T ss_pred             EECCCCCHHHHHHHHHH
T ss_conf             34899899999999997