HHsearch alignment for GI: 254780545 and conserved domain: PRK05818
>PRK05818 DNA polymerase III subunit delta'; Validated.
Probab=95.45 E-value=0.11 Score=31.06 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=99.7
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCC-----CCC---------EECCCHHHHHHHHHH---CCHHHHHHHHHHHHH---
Q ss_conf 233311003787425888999974246-----997---------020585788644420---332459999999987---
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEA-----NVP---------FFTISGSDFVELFVG---VGASRVRDMFEQAKN--- 238 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~---------f~~~~~s~~~~~~~g---~g~~~vr~lf~~a~~--- 238 (647)
T Consensus 6 n~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~ 85 (262)
T PRK05818 6 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 85 (262)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 89850566448776469999999998622899999988862786755899977997166455779899999999821140
Q ss_pred --HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf --378012063235641445578988626889889989985303235778299996298100883331656423141000
Q gi|254780545|r 239 --NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP 316 (647)
Q Consensus 239 --~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~ 316 (647)
T Consensus 86 e~~g~KV~II~~Ae~Mt--------------~~AANALLKtLE--EPp~nt~fIL~t~~~~~LLPTIrS-----RC~~~~ 144 (262)
T PRK05818 86 ESNGKKIYIIYGIEKLN--------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS-----RCVQYV 144 (262)
T ss_pred CCCCCEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCCHHHH-----HCCCCC
T ss_conf 02884899987778749--------------999999998612--898783899973881437308887-----701446
Q ss_pred HHHHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 1347889999999854887----773211024544120379899999999987645532024210456899
Q gi|254780545|r 317 NPDIVGREHILMVHSRNVP----LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 317 ~P~~~~r~~i~~~~~~~~~----~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
T Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i----~~~n~~~~~~~~~~ 210 (262)
T PRK05818 145 V-LSKEKKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLI----NKKNKLIQIHKAWI 210 (262)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HCCCCCEEHHHHHH
T ss_conf 6-643466788887408889876410110799998861676888999999998----75688433999999