HHsearch alignment for GI: 254780545 and conserved domain: PRK05818

>PRK05818 DNA polymerase III subunit delta'; Validated.
Probab=95.45  E-value=0.11  Score=31.06  Aligned_cols=179  Identities=15%  Similarity=0.129  Sum_probs=99.7

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCC-----CCC---------EECCCHHHHHHHHHH---CCHHHHHHHHHHHHH---
Q ss_conf             233311003787425888999974246-----997---------020585788644420---332459999999987---
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEA-----NVP---------FFTISGSDFVELFVG---VGASRVRDMFEQAKN---  238 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~---------f~~~~~s~~~~~~~g---~g~~~vr~lf~~a~~---  238 (647)
T Consensus         6 n~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~   85 (262)
T PRK05818          6 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV   85 (262)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             89850566448776469999999998622899999988862786755899977997166455779899999999821140


Q ss_pred             --HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf             --378012063235641445578988626889889989985303235778299996298100883331656423141000
Q gi|254780545|r  239 --NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP  316 (647)
Q Consensus       239 --~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~  316 (647)
T Consensus        86 e~~g~KV~II~~Ae~Mt--------------~~AANALLKtLE--EPp~nt~fIL~t~~~~~LLPTIrS-----RC~~~~  144 (262)
T PRK05818         86 ESNGKKIYIIYGIEKLN--------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS-----RCVQYV  144 (262)
T ss_pred             CCCCCEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCCHHHH-----HCCCCC
T ss_conf             02884899987778749--------------999999998612--898783899973881437308887-----701446


Q ss_pred             HHHHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             1347889999999854887----773211024544120379899999999987645532024210456899
Q gi|254780545|r  317 NPDIVGREHILMVHSRNVP----LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED  383 (647)
Q Consensus       317 ~P~~~~r~~i~~~~~~~~~----~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~  383 (647)
T Consensus       145 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i----~~~n~~~~~~~~~~  210 (262)
T PRK05818        145 V-LSKEKKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLI----NKKNKLIQIHKAWI  210 (262)
T ss_pred             C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HCCCCCEEHHHHHH
T ss_conf             6-643466788887408889876410110799998861676888999999998----75688433999999