HHsearch alignment for GI: 254780545 and conserved domain: PRK06645
>PRK06645 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.43 E-value=4.5e-12 Score=106.34 Aligned_cols=221 Identities=24% Similarity=0.369 Sum_probs=141.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC--
Q ss_conf 000011242256988985288999999999874335676642012333110037874258889999742469970205--
Q gi|254780545|r 135 AKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI-- 212 (647)
Q Consensus 135 Ak~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~-- 212 (647)
T Consensus 12 a~KyRP~----~f~~liGQ~~~~~~l~n~i~-----------~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~ 76 (507)
T PRK06645 12 ARKYRPS----NFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEN 76 (507)
T ss_pred EECCCCC----CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 3200799----76562393999999999997-----------39966347745879978899999999996799988889
Q ss_pred -------CHH-----------HHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf -------857-----------8864442--0332459999999987378-----01206323564144557898862688
Q gi|254780545|r 213 -------SGS-----------DFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDER 267 (647)
Q Consensus 213 -------~~s-----------~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~ 267 (647)
T Consensus 77 ~~~~~c~~c~~c~~i~~~~~~dv~EiDaas~~gv~~ir~l~~~~~-~~p~~~~~kv~iidE~hmls-------------- 141 (507)
T PRK06645 77 TTIKTCEKCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAE-YKPLQGKHKIFIIDEVHMLS-------------- 141 (507)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCEEEEEECCHHHCC--------------
T ss_conf 988888887678998658999859963788888899999986355-17876743589952142248--------------
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHH-HHHHHHCCCCCCCCCCHHHH
Q ss_conf 9889989985303235778299996298100883331-656423141000134788999-99998548877732110245
Q gi|254780545|r 268 EQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREH-ILMVHSRNVPLAPNVILKTI 345 (647)
Q Consensus 268 ~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~-i~~~~~~~~~~~~~~d~~~l 345 (647)
T Consensus 142 ~~a~nallktlE--epp~~~~Fi~atte~~kip~ti~srcq~f~~~-~i~~~~i~~~l~~i~~--~E~~~~~~~-al~~i 215 (507)
T PRK06645 142 KGAFNALLKTLE--EPPPHIIFIFATTEVQKIPATIISRCQRYDLR-RLSFEEIFKLLEYITK--QENLKADIE-ALRII 215 (507)
T ss_pred HHHHHHHHHHHH--CCCCCEEEEEECCCHHHCCHHHHHHCEEEEEE-CCCHHHHHHHHHHHHH--HCCCCCCHH-HHHHH
T ss_conf 999999999742--78644389997485364837888543278754-5997999999999999--768777789-99999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 44120379899999999987645532024210456899975013686556766
Q gi|254780545|r 346 ARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTA 398 (647)
Q Consensus 346 a~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~ 398 (647)
T Consensus 216 a~~a~G-s~RDalslldqai~~~~-~~~~~I~~~~V~~-----MLGl~Drs~l 261 (507)
T PRK06645 216 AYKSEG-SARDAVSILDQAASMSA-KSDNIISPQVINQ-----MLGLVDLSVI 261 (507)
T ss_pred HHHCCC-CHHHHHHHHHHHHHHHC-CCCCCCCHHHHHH-----HHCCCCHHHH
T ss_conf 985599-86789999999999754-8987026999999-----8389985679