HHsearch alignment for GI: 254780545 and conserved domain: PRK06871
>PRK06871 DNA polymerase III subunit delta'; Validated.
Probab=98.44 E-value=2.3e-06 Score=65.08 Aligned_cols=134 Identities=23% Similarity=0.315 Sum_probs=93.3
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHH--H--CCHHHHHHHHHHHH
Q ss_conf 123331100378742588899997424699-------7---------02058578864442--0--33245999999998
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFV--G--VGASRVRDMFEQAK 237 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~--g--~g~~~vr~lf~~a~ 237 (647)
T Consensus 20 ~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~~~~ 99 (324)
T PRK06871 20 GRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINEKVS 99 (324)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99543787689999789999999999982899999998888989999973899987998467888788999999999986
Q ss_pred HH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEE
Q ss_conf 73----78012063235641445578988626889889989985303235778299996298100883331656423141
Q gi|254780545|r 238 NN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQI 313 (647)
Q Consensus 238 ~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i 313 (647)
T Consensus 100 ~~~~~g~~KV~iI~~ae~m~--------------~~AaNALLKtLE--EPp~~~~fiL~t~~~~~ll~TI~S--RC-q~~ 160 (324)
T PRK06871 100 QFAQQGGNKVVYIQGAERLT--------------EAAANALLKTLE--EPRPNTYFLLQADLSASLLATIYS--RC-QTW 160 (324)
T ss_pred HCCCCCCCEEEEECCHHHHH--------------HHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCCHHHH--CC-CCE
T ss_conf 46220596699975888857--------------999999999833--898783899987870103240862--66-120
Q ss_pred EECHHHHHHHHHHHHHH
Q ss_conf 00013478899999998
Q gi|254780545|r 314 TVPNPDIVGREHILMVH 330 (647)
Q Consensus 314 ~~~~P~~~~r~~i~~~~ 330 (647)
T Consensus 161 ~~~~p~~~~~~~wL~~~ 177 (324)
T PRK06871 161 LIHVPEEQIALDWLQAQ 177 (324)
T ss_pred ECCCCCHHHHHHHHHHH
T ss_conf 08994999999999974