HHsearch alignment for GI: 254780545 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.43 E-value=0.0062 Score=40.22 Aligned_cols=133 Identities=22% Similarity=0.325 Sum_probs=66.0
Q ss_pred EEECCCCCHHHHHHHHHHHC-----C--CCCCEECCCH-----HHHHHHH---HH------CCHHHHHHHHHHHHHHCCH
Q ss_conf 10037874258889999742-----4--6997020585-----7886444---20------3324599999999873780
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAG-----E--ANVPFFTISG-----SDFVELF---VG------VGASRVRDMFEQAKNNSPC 242 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~-----e--~~~~f~~~~~-----s~~~~~~---~g------~g~~~vr~lf~~a~~~~p~ 242 (647)
T Consensus 179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~--~d 256 (404)
T PRK06995 179 FALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRN--KH 256 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC--CC
T ss_conf 8986688876375899999999998389837999768754789999999998759559995999999999997089--99
Q ss_pred HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCHHHCCCCCC--CCEEEECHHH
Q ss_conf 1206323564144557898862688988998998530323-577829999629810088333165642--3141000134
Q gi|254780545|r 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE-SSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPD 319 (647)
Q Consensus 243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~-~~~~v~vi~aTn~~~~lD~al~RpgRf--d~~i~~~~P~ 319 (647)
T Consensus 257 lILIDT---aGrs-------~rD~---~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~TKLDE 323 (404)
T PRK06995 257 IVLIDT---VGMS-------QRDR---MVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDE 323 (404)
T ss_pred EEEEEC---CCCC-------CCCH---HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 999809---9989-------7688---89999999973578852899977989999999999984469998399830406
Q ss_pred HHHHHHHHHHHH
Q ss_conf 788999999985
Q gi|254780545|r 320 IVGREHILMVHS 331 (647)
Q Consensus 320 ~~~r~~i~~~~~ 331 (647)
T Consensus 324 t~~~G~iln~~~ 335 (404)
T PRK06995 324 AASLGGALDTVI 335 (404)
T ss_pred CCCHHHHHHHHH
T ss_conf 797239999999