HHsearch alignment for GI: 254780545 and conserved domain: PRK07003
>PRK07003 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.07 E-value=2.4e-09 Score=86.67 Aligned_cols=186 Identities=28% Similarity=0.470 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------EE------C
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246997-------02------0
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------FF------T 211 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f~------~ 211 (647)
T Consensus 13 ~~f~e~vGQ~~v~~~l~nal~-----------~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~ 81 (816)
T PRK07003 13 KDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (816)
T ss_pred CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 857662384999999999997-----------098631475117898888899999999867899999897877555787
Q ss_pred CC-H--HHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 58-5--78864442--0332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r 212 IS-G--SDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF 281 (647)
Q Consensus 212 ~~-~--s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~ 281 (647)
T Consensus 82 i~~g~~~d~iEiDaAS~~~vd~~r~l~~~~-~y~p~~~r~KvyiiDEvHmls--------------~~afnalLKtlE-- 144 (816)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERA-VYAPVDARFKVYMIDEVHMLT--------------NHAFNAMLKTLE-- 144 (816)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC--
T ss_conf 755887754786355435768999999862-247866744799984154339--------------999999998403--
Q ss_pred CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 35778299996298100883331-656423141000134788999999985--488777321102454412037989999
Q gi|254780545|r 282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLR 358 (647)
Q Consensus 282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~ 358 (647)
T Consensus 145 epP~hv~FilaTTd~~k~p~tilSRc~~f~l~~-~~~~~i~~~---l~~i~~~E~i~~e~~-al~lia~~a~G-smRDal 218 (816)
T PRK07003 145 EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ-MPAGHIVSH---LERILGEERIAFEPQ-ALRLLARAAQG-SMRDAL 218 (816)
T ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHH
T ss_conf 798664899955880115288987776522367-999999999---999999829977999-99999997677-378888
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780545|r 359 NLVNEA 364 (647)
Q Consensus 359 ~~~~eA 364 (647)
T Consensus 219 sl~dQa 224 (816)
T PRK07003 219 SLTDQA 224 (816)
T ss_pred HHHHHH
T ss_conf 599999