HHsearch alignment for GI: 254780545 and conserved domain: PRK07133
>PRK07133 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.45 E-value=5.5e-12 Score=105.70 Aligned_cols=204 Identities=27% Similarity=0.437 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-----------CCC-
Q ss_conf 69889852889999999998743356766420123331100378742588899997424699702-----------058-
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-----------TIS- 213 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-----------~~~- 213 (647)
T Consensus 16 ~F~EVIGQe~Vv~tL~nAI~-----------~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~ 84 (718)
T PRK07133 16 KFDEIKGQDHIIETLKNIIK-----------SGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFN 84 (718)
T ss_pred CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCC
T ss_conf 75442285999999999997-----------4997505862389986889999999999679999999997702143047
Q ss_pred -HHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -578864442--0332459999999987378-----01206323564144557898862688988998998530323577
Q gi|254780545|r 214 -GSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSE 285 (647)
Q Consensus 214 -~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~ 285 (647)
T Consensus 85 ~s~DViEIDAASn~gVDdIReLie~v~-y~P~~gkYKVyIIDEvHMLS--------------~~AfNALLKtLE--EPP~ 147 (718)
T PRK07133 85 NNLDIIEMDAASNNGVDEIRELRENVK-NLPQISKYKIYIIDEVHMLS--------------KSAFNALLKTLE--EPPK 147 (718)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCCC--------------HHHHHHHHHHHC--CCCC
T ss_conf 898737754556688899999999825-58877872499996620079--------------999999998502--7987
Q ss_pred CEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8299996298100883331-656423141000134788999999985488777321102454412037989999999998
Q gi|254780545|r 286 GVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEA 364 (647)
Q Consensus 286 ~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eA 364 (647)
T Consensus 148 hvvFILaTTep~KIP~TIlSRCQrFdFk-rI~~~~I~~~L~~I~-~kE~I~~e~e-AL~lIA~~a~G-SmRDAlSlLDQv 223 (718)
T PRK07133 148 HVIFILATTDVQKIPLTILSRVQRFNFR-RISEDVIVHQLENIL-EKEKIKYEKN-ALKLIASLASG-SLRDALSIADQV 223 (718)
T ss_pred CCEEEEEECCHHHCCHHHHHCCEEEECC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHH
T ss_conf 8279997088254848774122033588-899999999999999-9859977899-99999997688-488898799999
Q ss_pred HHHHHHHHCCCCCHHHHHHHH
Q ss_conf 764553202421045689997
Q gi|254780545|r 365 ALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 365 a~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 224 ~~f~----ng~it~k~v~~~~ 240 (718)
T PRK07133 224 SIFG----NGNITLKNVNELF 240 (718)
T ss_pred HHHC----CCCCCHHHHHHHH
T ss_conf 9854----8987299999996