HHsearch alignment for GI: 254780545 and conserved domain: PRK07399

>PRK07399 DNA polymerase III subunit delta'; Validated.
Probab=98.67  E-value=3.2e-07  Score=71.24  Aligned_cols=181  Identities=19%  Similarity=0.283  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC----------EECCCHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246997----------0205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP----------FFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~----------f~~~~~s  215 (647)
T Consensus         2 ~F~~iiGq~~~~~~L~~ai~-----------~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHP   70 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIE-----------QNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHP   70 (314)
T ss_pred             CCCCCCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf             83312594999999999998-----------5996744877899983299999999999857899997665587518999


Q ss_pred             HHHHH---HHHCC----------------------HHHHHHHHHHHHH----HCCHHEEHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             88644---42033----------------------2459999999987----3780120632356414455789886268
Q gi|254780545|r  216 DFVEL---FVGVG----------------------ASRVRDMFEQAKN----NSPCIVFVDEIDAVGRHRGIGLGGGNDE  266 (647)
Q Consensus       216 ~~~~~---~~g~g----------------------~~~vr~lf~~a~~----~~p~iifiDeida~~~~r~~~~~~~~~e  266 (647)
T Consensus        71 Dl~~i~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m--------------  136 (314)
T PRK07399         71 DLLWVEPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM--------------  136 (314)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHC--------------
T ss_conf             778860562003454557789876530268777879999999999731885688479998897871--------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             89889989985303235778299996298100883331656423141000134788999999985488777321102454
Q gi|254780545|r  267 REQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIA  346 (647)
Q Consensus       267 ~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la  346 (647)
T Consensus       137 ~~~AaNaLLKtLE--EP~~~~fILi-t~~~~~lLpTI~S--RC-Q~i~F~~l~~~~i~~~L~~~~~~--~~~~~~~~~l~  208 (314)
T PRK07399        137 NEAAANALLKTLE--EPGNGTLILI-APSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDN--INEILDHPELL  208 (314)
T ss_pred             CHHHHHHHHHHHC--CCCCCEEEEE-ECCHHHCCHHHHC--CC-EEEECCCCCHHHHHHHHHHCCCC--CCCCCCHHHHH
T ss_conf             9999999998614--7878569999-7993649146641--87-56338998999999999971664--33102789999


Q ss_pred             HHHHCCCHHHHHH
Q ss_conf             4120379899999
Q gi|254780545|r  347 RGTPGFSGADLRN  359 (647)
Q Consensus       347 ~~t~g~sgAdi~~  359 (647)
T Consensus       209 ~~A~GspG~a~~~  221 (314)
T PRK07399        209 ALAQGSPGAAIAN  221 (314)
T ss_pred             HHHCCCHHHHHHH
T ss_conf             8817997999999