HHsearch alignment for GI: 254780545 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=98.88 E-value=7.5e-09 Score=83.05 Aligned_cols=194 Identities=20% Similarity=0.230 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHH--
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699-----7020585788--
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDF-- 217 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~-- 217 (647)
T Consensus 14 ~~~~~liGqe~~~~~L~~a~~-----------~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~ 82 (363)
T PRK07471 14 RETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLA 82 (363)
T ss_pred CCCCCCCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
T ss_conf 982731681999999999998-----------599764587679998188999999999985799977777678705312
Q ss_pred ------HHHHHHCCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCC-CCCC---------CHHHHHHHHHHHHH
Q ss_conf ------6444203324----59999999987378012063235641445578-9886---------26889889989985
Q gi|254780545|r 218 ------VELFVGVGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIG-LGGG---------NDEREQTLNQLLVE 277 (647)
Q Consensus 218 ------~~~~~g~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~r~~~-~~~~---------~~e~~~~ln~ll~~ 277 (647)
T Consensus 83 ~~~~~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~ 162 (363)
T PRK07471 83 VDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKV 162 (363)
T ss_pred CCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHH
T ss_conf 58777289999526999846676200113332124453999999999972485248966999868787388999999997
Q ss_pred HCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 303235778299996298100883331-6564231410001347889999999854887773211024544120379899
Q gi|254780545|r 278 MDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGAD 356 (647)
Q Consensus 278 mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAd 356 (647)
T Consensus 163 LE--EPP~~t~fiLit~~~~~llpTI~SRCq~~----~~~~l~~~~~~~~L~~~~--~~~~~~~~~~~la~~a~Gs~~~A 234 (363)
T PRK07471 163 LE--EPPARSLLLLVSHAPARLLPTIRSRCRKL----RLRPLAPEDVIAALAEAG--GPALDDAELAALAALAEGSVGRA 234 (363)
T ss_pred HC--CCCCCEEEEEEECCHHHCHHHHHHHCCCC----CCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 21--58988389986399777779999735242----589959999999999843--89999899999999758999999
Q ss_pred H
Q ss_conf 9
Q gi|254780545|r 357 L 357 (647)
Q Consensus 357 i 357 (647)
T Consensus 235 l 235 (363)
T PRK07471 235 L 235 (363)
T ss_pred H
T ss_conf 9