HHsearch alignment for GI: 254780545 and conserved domain: PRK07940
>PRK07940 DNA polymerase III subunit delta'; Validated.
Probab=99.05 E-value=3.9e-09 Score=85.10 Aligned_cols=183 Identities=22% Similarity=0.390 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE------------
Q ss_conf 69889852889999999998743----35676642012333110037874258889999742469970------------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLC----DPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF------------ 209 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~----~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f------------ 209 (647)
T Consensus 3 ~f~~ivGQe~v~~~L~~A~~~~R~~~~~~---~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C 79 (395)
T PRK07940 3 VWDRLVGQDAVVAELRAAARAARADSAHS---AAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRAC 79 (395)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 70131592999999999998363434433---334687660376368998788999999999966999999999878789
Q ss_pred ---ECCCHHHHHHHHH-H--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---2058578864442-0--332459999999987378-----0120632356414455789886268898899899853
Q gi|254780545|r 210 ---FTISGSDFVELFV-G--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM 278 (647)
Q Consensus 210 ---~~~~~s~~~~~~~-g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m 278 (647)
T Consensus 80 ~~i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~-~p~~~~~kv~ii~~a~~m--------------~~~a~NalLKtL 144 (395)
T PRK07940 80 RTVLAGTHPDVRVVVPEGLSIGVDEVREIVQIAAR-RPTTGRWRIVVIEDADRL--------------TERAANALLKAV 144 (395)
T ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCCEEEEEECHHHH--------------CHHHHHHHHHHH
T ss_conf 99876899871898268776889999999999852-730379559998077874--------------899999999852
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHH
Q ss_conf 03235778299996298100883331656423141000134788999999985488777321102454412037989
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGA 355 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgA 355 (647)
T Consensus 145 E--EPp~~~~fiL~t~~~~~llpTI~S--Rc-q~~~f~~~~~~~i~~~L~---~~~gi~~~-~A~~aA~~s~G~igr 212 (395)
T PRK07940 145 E--EPPPRTVWLLCAPSVEDVLPTIRS--RC-RHVALRTPSVEAVADVLV---RRDGVDPE-TAQWAARASGGHIGR 212 (395)
T ss_pred C--CCCCCEEEEEEECCHHHHHHHHHH--HH-EECCCCCCCHHHHHHHHH---HCCCCCHH-HHHHHHHHHCCCHHH
T ss_conf 1--788886999873997874468874--40-002379999999999998---70199989-999999980898899