HHsearch alignment for GI: 254780545 and conserved domain: PRK08099

Probab=96.51  E-value=0.0024  Score=43.16  Aligned_cols=84  Identities=21%  Similarity=0.262  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH-HHHHHCCHH-HHHHH--------
Q ss_conf             335676642012-----333110037874258889999742469970205857886-444203324-59999--------
Q gi|254780545|r  168 CDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV-ELFVGVGAS-RVRDM--------  232 (647)
Q Consensus       168 ~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~-~~~~g~g~~-~vr~l--------  232 (647)
T Consensus       213 ~nP~~~W~~Ip~~vR~~FvKkVvIlG~ESTGKTTL~~~LA~~ynT~~v~EYgReY~~ek~~~~e~~l~~~D~~~IA~gQ~  292 (411)
T PRK08099        213 ENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHA  292 (411)
T ss_pred             HCHHHHHHHCCHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             38788888613777775436899989998888999999999978995189899999997189745688889999999999


Q ss_pred             --HHHHHHHCCHHEEHHHHHHH
Q ss_conf             --99998737801206323564
Q gi|254780545|r  233 --FEQAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       233 --f~~a~~~~p~iifiDeida~  252 (647)
T Consensus       293 ~~e~~a~~~AnklLFcDT-D~l  313 (411)
T PRK08099        293 QYIDFAVKYANKVAFIDT-DFV  313 (411)
T ss_pred             HHHHHHHHCCCCEEEEEC-CHH
T ss_conf             999998750597699838-499