HHsearch alignment for GI: 254780545 and conserved domain: PRK08116
>PRK08116 hypothetical protein; Validated.
Probab=98.72 E-value=4.2e-08 Score=77.63 Aligned_cols=115 Identities=23% Similarity=0.407 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHH----HCCHHHHHHHHHH
Q ss_conf 9987433567664201233311003787425888999974246---99702058578864442----0332459999999
Q gi|254780545|r 163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFV----GVGASRVRDMFEQ 235 (647)
Q Consensus 163 ~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~----g~g~~~vr~lf~~ 235 (647)
T Consensus 94 a~~Y~~~---f~~~~-~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~~~~~~~e~l~~ 169 (262)
T PRK08116 94 AVKYVKK---FEEMK-KESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSEGKEDENEIIRA 169 (262)
T ss_pred HHHHHHH---HHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999998---98736-4686189989899989999999999999879939998899999999999863561019999998
Q ss_pred HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 9873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
T Consensus 170 l-~~~-dLLIiDDlG---~e~~t------~w---~~e~lf~IIn~R-y~~~kptIiTTNl~ 215 (262)
T PRK08116 170 L-DNA-DLLILDDLG---AEKDT------EW---VREKLYNIIDSR-YRKGLPTIFTTNLS 215 (262)
T ss_pred H-HCC-CEEEEEHHC---CCCCC------HH---HHHHHHHHHHHH-HHCCCCEEEECCCC
T ss_conf 6-129-989983221---45698------78---999999999999-97699989987999