HHsearch alignment for GI: 254780545 and conserved domain: PRK08533

>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=97.54  E-value=0.00023  Score=50.52  Aligned_cols=132  Identities=24%  Similarity=0.387  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH----HHHHH------------------
Q ss_conf             43356766420123331--1003787425888999974246---997020585----78864------------------
Q gi|254780545|r  167 LCDPQKFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG----SDFVE------------------  219 (647)
Q Consensus       167 l~~~~~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~----s~~~~------------------  219 (647)
T Consensus         8 ~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l   87 (230)
T PRK08533          8 LDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKL   87 (230)
T ss_pred             CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCE
T ss_conf             57135788717898898489998689987899999999999878986999994389999999999869981799757967


Q ss_pred             ----HHHH-CCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             ----4420-3324----599999999873780120632356414455789886268898899899853032357782999
Q gi|254780545|r  220 ----LFVG-VGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILI  290 (647)
Q Consensus       220 ----~~~g-~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi  290 (647)
T Consensus        88 ~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~---------~~~~~~~~~~~~lk~l~s~gktIil  158 (230)
T PRK08533         88 LYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRD---------ASEVQIRDLMAFFKRISSLNKVIIL  158 (230)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCC---------CCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9996134335404578999999732664379899990531885167---------7789999999999999858988999


Q ss_pred             EECCCCCCCCHHHCCCCCC
Q ss_conf             9629810088333165642
Q gi|254780545|r  291 AATNRPDVLDAALLRPGRF  309 (647)
Q Consensus       291 ~aTn~~~~lD~al~RpgRf  309 (647)
T Consensus       159 --Tv~p~~~~e~~l~~lrs  175 (230)
T PRK08533        159 --TANPKELPESVLLILRT  175 (230)
T ss_pred             --EECCCCCCHHHHHHHHE
T ss_conf             --95633136245442041