HHsearch alignment for GI: 254780545 and conserved domain: PRK08769
>PRK08769 DNA polymerase III subunit delta'; Validated.
Probab=98.37 E-value=4.1e-06 Score=63.25 Aligned_cols=133 Identities=27% Similarity=0.401 Sum_probs=84.4
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCCCC----CEE---------CCCHHHHHHHH-----HH------CCHHHHHHH
Q ss_conf 0123331100378742588899997424699----702---------05857886444-----20------332459999
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANV----PFF---------TISGSDFVELF-----VG------VGASRVRDM 232 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~----~f~---------~~~~s~~~~~~-----~g------~g~~~vr~l 232 (647)
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 69942068758999878999999999998379979765433889996689989687753444454311234869999999
Q ss_pred HHHHHHHC----CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCC
Q ss_conf 99998737----80120632356414455789886268898899899853032357782999962981008833316564
Q gi|254780545|r 233 FEQAKNNS----PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGR 308 (647)
Q Consensus 233 f~~a~~~~----p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgR 308 (647)
T Consensus 102 ~~~~~~~p~~g~~KV~IId~Ad~mn--------------~~AaNalLK~LE--EPp~~~~~iL~~~~~~~ll~TI~S--R 163 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAIN--------------RSACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHHHHCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCHHHHH--C
T ss_conf 9996137202795699980667528--------------999999999822--799884899986993658247764--8
Q ss_pred CCCEEEECHHHHHHHHHHHH
Q ss_conf 23141000134788999999
Q gi|254780545|r 309 FDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 309 fd~~i~~~~P~~~~r~~i~~ 328 (647)
T Consensus 164 -Cq~~~~~~p~~~~~~~~L~ 182 (319)
T PRK08769 164 -CQRLEFKLPPAHEALAWLL 182 (319)
T ss_pred -CEEECCCCCCHHHHHHHHH
T ss_conf -5011189969999999999