HHsearch alignment for GI: 254780545 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=99.07 E-value=2.6e-09 Score=86.41 Aligned_cols=181 Identities=19% Similarity=0.248 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-------CCEE--CCC--
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469-------9702--058--
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-------VPFF--TIS-- 213 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-------~~f~--~~~-- 213 (647)
T Consensus 20 r~~~~liGq~~~~~~L~~a~~-----------~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~ 88 (352)
T PRK09112 20 SENNRLFGHEEARAFLAQAYR-----------EGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPA 88 (352)
T ss_pred CCHHHHCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 446462786999999999998-----------499652465358998089999999999986699866686556788878
Q ss_pred -----------HHHHHHHHH-----------HCCHHHHHHHHHHHHHHCC----HHEEHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf -----------578864442-----------0332459999999987378----01206323564144557898862688
Q gi|254780545|r 214 -----------GSDFVELFV-----------GVGASRVRDMFEQAKNNSP----CIVFVDEIDAVGRHRGIGLGGGNDER 267 (647)
Q Consensus 214 -----------~s~~~~~~~-----------g~g~~~vr~lf~~a~~~~p----~iifiDeida~~~~r~~~~~~~~~e~ 267 (647)
T Consensus 89 ~~~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m--------------~ 154 (352)
T PRK09112 89 SPLWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDM--------------N 154 (352)
T ss_pred CHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH--------------H
T ss_conf 77899997489999565534322021454335777999999998454886688069998187874--------------6
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 98899899853032357782999962981008833316564231410001347889999999854887773211024544
Q gi|254780545|r 268 EQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIAR 347 (647)
Q Consensus 268 ~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~ 347 (647)
T Consensus 155 ~~aaNALLK~LE--EPp~~~~fiLit~~~~~ll~TI~S--RC-q~~~f~pL~~~di~~~L~~i~~~~~~~~~~~~~~l~~ 229 (352)
T PRK09112 155 RNAANAILKTLE--EPPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSKQGISAGEETEALLQ 229 (352)
T ss_pred HHHHHHHHHHHH--CCCCCEEEEEEECCHHHCHHHHHH--HC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999999853--489874899886997777689997--43-3214889398999999998751268998799999998
Q ss_pred HHHCCCHH
Q ss_conf 12037989
Q gi|254780545|r 348 GTPGFSGA 355 (647)
Q Consensus 348 ~t~g~sgA 355 (647)
T Consensus 230 ~a~GS~~~ 237 (352)
T PRK09112 230 RSEGSVRK 237 (352)
T ss_pred HHCCCHHH
T ss_conf 70899889