HHsearch alignment for GI: 254780545 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.

Probab=96.23  E-value=0.005  Score=40.88  Aligned_cols=30  Identities=43%  Similarity=0.655  Sum_probs=22.9

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             420123331--100378742588899997424
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
T Consensus       258 llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~  289 (501)
T PRK09302        258 MCGGGFFRGSIILVSGATGTGKTLLVSKFAEA  289 (501)
T ss_pred             HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             72599758946999889998889999999999