HHsearch alignment for GI: 254780545 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=99.53 E-value=2.4e-13 Score=115.61 Aligned_cols=218 Identities=20% Similarity=0.326 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHH-
Q ss_conf 698898528899999999987433567664201233311003787425888999974246997020585------7886-
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFV- 218 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~- 218 (647)
T Consensus 320 Ld~dHyGL~~vKeRile~lAv~~~~~---~~---kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirG 393 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVN---KI---KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCC---CC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCC
T ss_conf 76543065779999999999998624---67---7877996469987724699999998589869980688788888256
Q ss_pred --HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHCC-----CCCC------
Q ss_conf --4442033245999999998737801206323564144-5578988626889889989985303-----2357------
Q gi|254780545|r 219 --ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRH-RGIGLGGGNDEREQTLNQLLVEMDG-----FESS------ 284 (647)
Q Consensus 219 --~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~-r~~~~~~~~~e~~~~ln~ll~~mdg-----~~~~------ 284 (647)
T Consensus 394 HrrTYvgampGrii~~l~~a~~~nP-v~llDEiDK~~~~~~G-------d----p~salLEvLDpeQN~~F~Dhyl~~~~ 461 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------D----PASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCC-EEEEHHHHHHCCCCCC-------C----HHHHHHHHCCHHHCCCCCCCEEECCC
T ss_conf 4334344368389999997489885-6650035552245589-------9----88999984597655640003220464
Q ss_pred --CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CC-CCCCH--HHHHHHHHCCC-
Q ss_conf --782999962981008833316564231410001347889999999854887-----77-32110--24544120379-
Q gi|254780545|r 285 --EGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LA-PNVIL--KTIARGTPGFS- 353 (647)
Q Consensus 285 --~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~-~~~d~--~~la~~t~g~s- 353 (647)
T Consensus 462 DlS~v~Fi~TaN~~~-ip~pLlD--RmE-~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytr 537 (784)
T PRK10787 462 DLSDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR 537 (784)
T ss_pred CHHHEEEEEECCCCC-CCHHHHH--HEE-EEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 522258997327677-8767763--121-554116767889999997453999998289965674399999998753365
Q ss_pred --H-----HHHHHHHHHHHHHHHHHHC-C--CCCHHHHHHHH
Q ss_conf --8-----9999999998764553202-4--21045689997
Q gi|254780545|r 354 --G-----ADLRNLVNEAALMAARRNR-R--LVTMQEFEDAK 385 (647)
Q Consensus 354 --g-----Adi~~~~~eAa~~a~r~~~-~--~i~~~dl~~A~ 385 (647)
T Consensus 538 EaGvR~ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~l 579 (784)
T PRK10787 538 EAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHH
T ss_conf 444251688999999999999970788785588899999982