HHsearch alignment for GI: 254780545 and conserved domain: PRK10787

>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=99.53  E-value=2.4e-13  Score=115.61  Aligned_cols=218  Identities=20%  Similarity=0.326  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHH-
Q ss_conf             698898528899999999987433567664201233311003787425888999974246997020585------7886-
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFV-  218 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~-  218 (647)
T Consensus       320 Ld~dHyGL~~vKeRile~lAv~~~~~---~~---kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirG  393 (784)
T PRK10787        320 LDTDHYGLERVKDRILEYLAVQSRVN---KI---KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG  393 (784)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHCC---CC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCC
T ss_conf             76543065779999999999998624---67---7877996469987724699999998589869980688788888256


Q ss_pred             --HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHCC-----CCCC------
Q ss_conf             --4442033245999999998737801206323564144-5578988626889889989985303-----2357------
Q gi|254780545|r  219 --ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRH-RGIGLGGGNDEREQTLNQLLVEMDG-----FESS------  284 (647)
Q Consensus       219 --~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~-r~~~~~~~~~e~~~~ln~ll~~mdg-----~~~~------  284 (647)
T Consensus       394 HrrTYvgampGrii~~l~~a~~~nP-v~llDEiDK~~~~~~G-------d----p~salLEvLDpeQN~~F~Dhyl~~~~  461 (784)
T PRK10787        394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------D----PASALLEVLDPEQNVAFSDHYLEVDY  461 (784)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCC-EEEEHHHHHHCCCCCC-------C----HHHHHHHHCCHHHCCCCCCCEEECCC
T ss_conf             4334344368389999997489885-6650035552245589-------9----88999984597655640003220464


Q ss_pred             --CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CC-CCCCH--HHHHHHHHCCC-
Q ss_conf             --782999962981008833316564231410001347889999999854887-----77-32110--24544120379-
Q gi|254780545|r  285 --EGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LA-PNVIL--KTIARGTPGFS-  353 (647)
Q Consensus       285 --~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~-~~~d~--~~la~~t~g~s-  353 (647)
T Consensus       462 DlS~v~Fi~TaN~~~-ip~pLlD--RmE-~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytr  537 (784)
T PRK10787        462 DLSDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR  537 (784)
T ss_pred             CHHHEEEEEECCCCC-CCHHHHH--HEE-EEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             522258997327677-8767763--121-554116767889999997453999998289965674399999998753365


Q ss_pred             --H-----HHHHHHHHHHHHHHHHHHC-C--CCCHHHHHHHH
Q ss_conf             --8-----9999999998764553202-4--21045689997
Q gi|254780545|r  354 --G-----ADLRNLVNEAALMAARRNR-R--LVTMQEFEDAK  385 (647)
Q Consensus       354 --g-----Adi~~~~~eAa~~a~r~~~-~--~i~~~dl~~A~  385 (647)
T Consensus       538 EaGvR~ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~l  579 (784)
T PRK10787        538 EAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL  579 (784)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHH
T ss_conf             444251688999999999999970788785588899999982