HHsearch alignment for GI: 254780545 and conserved domain: PRK10923
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional.
Probab=98.54 E-value=1.1e-06 Score=67.48 Aligned_cols=210 Identities=26% Similarity=0.355 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH----H
Q ss_conf 69889852889999999998743356766420123331100378742588899997424---6997020585788----6
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF----V 218 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~----~ 218 (647)
T Consensus 136 ~~~~liG~S~~m~~v~~~i~~------~----a~~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR------L----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred CCCCCEECCHHHHHHHHHHHH------H----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHH
T ss_conf 755654689999999999999------8----588997899898982699999999974887799957876788997789
Q ss_pred -HHHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCC-C
Q ss_conf -44420------33245-99999999873780120632356414455789886268898899899853-----03235-7
Q gi|254780545|r 219 -ELFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFES-S 284 (647)
Q Consensus 219 -~~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~-~ 284 (647)
T Consensus 206 e~eLFG~~~gaf~ga~~~~~g~~e~a---~~GTLfLdeI~~L~~~----------~Q-~kLl~~L~~~~~~~~g~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLD----------VQ-TRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHC---CCCCEEHHHHHHCCHH----------HH-HHHHHHHHCCCEEECCCCCEEE
T ss_conf 99970876678788642458736643---8992656636648999----------99-9999998559378579985122
Q ss_pred CCEEEEEECCCCCCCCHHHCCCCCCCCE-------EEECHHHHHHHHH----HHHHHHCCC----CC-CCCCCHHHHHHH
Q ss_conf 7829999629810088333165642314-------1000134788999----999985488----77-732110245441
Q gi|254780545|r 285 EGVILIAATNRPDVLDAALLRPGRFDRQ-------ITVPNPDIVGREH----ILMVHSRNV----PL-APNVILKTIARG 348 (647)
Q Consensus 285 ~~v~vi~aTn~~~~lD~al~RpgRfd~~-------i~~~~P~~~~r~~----i~~~~~~~~----~~-~~~~d~~~la~~ 348 (647)
T Consensus 272 ~d~RiIaat~~~L---~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 348 (469)
T PRK10923 272 VDVRIIAATHQNL---EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAAL 348 (469)
T ss_pred ECCEEEEECCCCH---HHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 1437997078799---9986608177999986442401584654465349999999999999985999787899999999
Q ss_pred -HHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf -203798--9999999998764553202421045689997
Q gi|254780545|r 349 -TPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 349 -t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 349 ~~y~WPGNvrEL~n~ier~~~~~~---~~~i~~~dl~~~l 385 (469)
T PRK10923 349 TRLAWPGNVRQLENTCRWLTVMAA---GQEVLIQDLPGEL 385 (469)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCC---CCCCCHHHCCHHH
T ss_conf 749999879999999999998579---9825477572988