HHsearch alignment for GI: 254780545 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.31 E-value=2.4e-10 Score=93.91 Aligned_cols=124 Identities=26% Similarity=0.422 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH-----
Q ss_conf 985288999999999874335676642012----33311003787425888999974246997020585788644-----
Q gi|254780545|r 150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGR----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL----- 220 (647)
Q Consensus 150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~----- 220 (647)
T Consensus 460 viGQ~~Ai~~v~~ai~~-------~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsr 532 (758)
T PRK11034 460 VFGQDKAIEALTEAIKM-------SRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred HHCCHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
T ss_conf 74549999999999999-------86388899997058999789987779999999999866772142665312014777
Q ss_pred -------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC-------
Q ss_conf -------420332459999999987378012063235641445578988626889889989985303-2-357-------
Q gi|254780545|r 221 -------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS------- 284 (647)
Q Consensus 221 -------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~------- 284 (647)
T Consensus 533 LiGaPPGYVGy~eG--G~Lte~Vr~~PysVvL~DEIEKA-----------h---pdV~nilLQvlD~G~LtD~~Gr~vdF 596 (758)
T PRK11034 533 LIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------H---PDVFNLLLQVMDNGTLTDNNGRKADF 596 (758)
T ss_pred HCCCCCCCCCCCCC--CCCCHHHHHCCCEEEEEHHHHHH-----------C---HHHHHHHHHHCCCCCCCCCCCCEEEC
T ss_conf 44899866676777--70128787398779973367563-----------9---89999887323778301799998844
Q ss_pred CCEEEEEECCCC
Q ss_conf 782999962981
Q gi|254780545|r 285 EGVILIAATNRP 296 (647)
Q Consensus 285 ~~v~vi~aTn~~ 296 (647)
T Consensus 597 ~NtiIImTSN~G 608 (758)
T PRK11034 597 RNVVLVMTTNAG 608 (758)
T ss_pred EEEEEEEECCCC
T ss_conf 001999825617