HHsearch alignment for GI: 254780545 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=98.95 E-value=2.4e-08 Score=79.33 Aligned_cols=212 Identities=24% Similarity=0.327 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHH--
Q ss_conf 422569889852889999999998743356766420123331100378742588899997424---699702058578--
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSD-- 216 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~-- 216 (647)
T Consensus 319 ~~~~~f~~l~g~s~~~~~~~~~a----------~~~a~~~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~ 388 (639)
T PRK11388 319 KVSHTFDHMPQDSPQMRRLIHFG----------RQAAKSSFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLP 388 (639)
T ss_pred CCCCCHHHCCCCCHHHHHHHHHH----------HHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 78888554467999999999999----------99968899689889898109999999995577789981898789898
Q ss_pred ---HHHHHHH--CCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCC-
Q ss_conf ---8644420--33245--99999999873780120632356414455789886268898899899853-----03235-
Q gi|254780545|r 217 ---FVELFVG--VGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFES- 283 (647)
Q Consensus 217 ---~~~~~~g--~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~- 283 (647)
T Consensus 389 ~~~~e~elfG~~~~~~~~g~~g~~e~A---~gGTL~LdeI~~lp~-----------~~Q~~LlrvL~~~~~~r~g~~~~~ 454 (639)
T PRK11388 389 DEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSV-----------ELQSALLQVLKTGVITRLDSRRLI 454 (639)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHCC---CCCEEEECCHHHCCH-----------HHHHHHHHHHHCCCEEECCCCCEE
T ss_conf 467899873877676434668624403---698288467264999-----------999999999865937856999466
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH---HHHHHCC--------CCCCCCCCHHH
Q ss_conf 7782999962981008833316564231-------4100013478899-99---9998548--------87773211024
Q gi|254780545|r 284 SEGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI---LMVHSRN--------VPLAPNVILKT 344 (647)
Q Consensus 284 ~~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i---~~~~~~~--------~~~~~~~d~~~ 344 (647)
T Consensus 455 ~vdvRiiaat~~~l---~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~-a~~~ 530 (639)
T PRK11388 455 PVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-ALAR 530 (639)
T ss_pred EEEEEEEEECCHHH---HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHH
T ss_conf 64279997364508---9998749854999987674410573323253439999999999999971999998999-9999
Q ss_pred HHHHHHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 5441203798--99999999987645532024210456899975
Q gi|254780545|r 345 IARGTPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAKD 386 (647)
Q Consensus 345 la~~t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~ 386 (647)
T Consensus 531 L~~--y~WPGNvrEL~nvl~~a~~~---~~~~~I~~~~Lp~~~~ 569 (639)
T PRK11388 531 LVS--YRWPGNDFELRSVIENLALS---SDNGRIRLSDLPEHLF 569 (639)
T ss_pred HHC--CCCCCHHHHHHHHHHHHHHH---CCCCCCCHHHCCHHHH
T ss_conf 972--89997999999999999983---8998426797808775