HHsearch alignment for GI: 254780545 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.91 E-value=0.011 Score=38.45 Aligned_cols=169 Identities=16% Similarity=0.249 Sum_probs=82.7
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCC---------CCCEECCCH-----HHHHHHHH---HC---CHHHHHHHHHHHHHH
Q ss_conf 33311003787425888999974246---------997020585-----78864442---03---324599999999873
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEA---------NVPFFTISG-----SDFVELFV---GV---GASRVRDMFEQAKNN 239 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~---------~~~f~~~~~-----s~~~~~~~---g~---g~~~vr~lf~~a~~~ 239 (647)
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~ 252 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH
T ss_conf 76289998998875787999999999986267677379998078758899999999999788069857889999999972
Q ss_pred -CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCCCCHHHCCCCC--CCCEEEE
Q ss_conf -780120632356414455789886268898899899853032357-782999962981008833316564--2314100
Q gi|254780545|r 240 -SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS-EGVILIAATNRPDVLDAALLRPGR--FDRQITV 315 (647)
Q Consensus 240 -~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn~~~~lD~al~RpgR--fd~~i~~ 315 (647)
T Consensus 253 ~~~D~IlIDT---AGr------s~~d~~---~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~~~~~~~~I-~ 319 (388)
T PRK12723 253 KDFDLVLIDT---IGK------SPKDFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFSPFSYKTVI-F 319 (388)
T ss_pred CCCCEEEEEC---CCC------CCCCHH---HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEE-E
T ss_conf 4999999958---998------856899---99999999974189845999987989999999999984279998499-9
Q ss_pred CHHHHHHH-HHHHHHHH-CCCCCC---------CCC---CHHHHHHHHHCCCHHHHHHHH
Q ss_conf 01347889-99999985-488777---------321---102454412037989999999
Q gi|254780545|r 316 PNPDIVGR-EHILMVHS-RNVPLA---------PNV---ILKTIARGTPGFSGADLRNLV 361 (647)
Q Consensus 316 ~~P~~~~r-~~i~~~~~-~~~~~~---------~~~---d~~~la~~t~g~sgAdi~~~~ 361 (647)
T Consensus 320 TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~~~ 379 (388)
T PRK12723 320 TKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAEFI 379 (388)
T ss_pred EECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 832278986699999999888869993899683020338999999998487145469999