HHsearch alignment for GI: 254780545 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.85 E-value=0.046 Score=33.92 Aligned_cols=134 Identities=21% Similarity=0.279 Sum_probs=63.4
Q ss_pred EEECCCCCHHHHHHHHHHHCC-------CCCCEECCCH-----HHHHH---HHHHCC------HHHHHHHHHHHHHHCCH
Q ss_conf 100378742588899997424-------6997020585-----78864---442033------24599999999873780
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGE-------ANVPFFTISG-----SDFVE---LFVGVG------ASRVRDMFEQAKNNSPC 242 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e-------~~~~f~~~~~-----s~~~~---~~~g~g------~~~vr~lf~~a~~~~p~ 242 (647)
T Consensus 351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~--~~~ 428 (557)
T PRK12727 351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR--DYK 428 (557)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHC--CCC
T ss_conf 787437776731179999999999739981899972664087999999999983975798289999999999836--999
Q ss_pred HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC--CCEEEECHHHH
Q ss_conf 1206323564144557898862688988998998530323577829999629810088333165642--31410001347
Q gi|254780545|r 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPDI 320 (647)
Q Consensus 243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRf--d~~i~~~~P~~ 320 (647)
T Consensus 429 lvliDT---aG~-------~~rd~---~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TKlDE~ 495 (557)
T PRK12727 429 LVLIDT---AGM-------GQRDR---ALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDET 495 (557)
T ss_pred EEEEEC---CCC-------CCCCH---HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 899949---998-------84699---99999998751477635999968899899999999853799874899614367
Q ss_pred HHHHHHHHHHHC
Q ss_conf 889999999854
Q gi|254780545|r 321 VGREHILMVHSR 332 (647)
Q Consensus 321 ~~r~~i~~~~~~ 332 (647)
T Consensus 496 ~~~G~~l~~~~~ 507 (557)
T PRK12727 496 GRFGSALSVVVD 507 (557)
T ss_pred CCCCHHHHHHHH
T ss_conf 870399999999