HHsearch alignment for GI: 254780545 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.85  E-value=0.046  Score=33.92  Aligned_cols=134  Identities=21%  Similarity=0.279  Sum_probs=63.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCC-------CCCCEECCCH-----HHHHH---HHHHCC------HHHHHHHHHHHHHHCCH
Q ss_conf             100378742588899997424-------6997020585-----78864---442033------24599999999873780
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGE-------ANVPFFTISG-----SDFVE---LFVGVG------ASRVRDMFEQAKNNSPC  242 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e-------~~~~f~~~~~-----s~~~~---~~~g~g------~~~vr~lf~~a~~~~p~  242 (647)
T Consensus       351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~--~~~  428 (557)
T PRK12727        351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR--DYK  428 (557)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHC--CCC
T ss_conf             787437776731179999999999739981899972664087999999999983975798289999999999836--999


Q ss_pred             HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC--CCEEEECHHHH
Q ss_conf             1206323564144557898862688988998998530323577829999629810088333165642--31410001347
Q gi|254780545|r  243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPDI  320 (647)
Q Consensus       243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRf--d~~i~~~~P~~  320 (647)
T Consensus       429 lvliDT---aG~-------~~rd~---~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TKlDE~  495 (557)
T PRK12727        429 LVLIDT---AGM-------GQRDR---ALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDET  495 (557)
T ss_pred             EEEEEC---CCC-------CCCCH---HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             899949---998-------84699---99999998751477635999968899899999999853799874899614367


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             889999999854
Q gi|254780545|r  321 VGREHILMVHSR  332 (647)
Q Consensus       321 ~~r~~i~~~~~~  332 (647)
T Consensus       496 ~~~G~~l~~~~~  507 (557)
T PRK12727        496 GRFGSALSVVVD  507 (557)
T ss_pred             CCCCHHHHHHHH
T ss_conf             870399999999