HHsearch alignment for GI: 254780545 and conserved domain: PRK13900

>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=96.09  E-value=0.011  Score=38.56  Aligned_cols=79  Identities=22%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--CEECCCH---------HHHHHHHH-----HCCHHHHHHHHH
Q ss_conf             6766420123331100378742588899997424699--7020585---------78864442-----033245999999
Q gi|254780545|r  171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV--PFFTISG---------SDFVELFV-----GVGASRVRDMFE  234 (647)
Q Consensus       171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--~f~~~~~---------s~~~~~~~-----g~g~~~vr~lf~  234 (647)
T Consensus       150 ~~fL~~aV~~r~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v~l~~~~~~~g~~~vt~~~Ll~  229 (332)
T PRK13900        150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRVHLLASKGGQGRAKVTTQDLIE  229 (332)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEEEEEECCCCCCCCEECHHHHHH
T ss_conf             99999998648719998888988999999998358953535663140663566688889999716888866086999999


Q ss_pred             HHHHHCCHHEEHHHH
Q ss_conf             998737801206323
Q gi|254780545|r  235 QAKNNSPCIVFVDEI  249 (647)
Q Consensus       235 ~a~~~~p~iifiDei  249 (647)
T Consensus       230 ~aLR~rPDRIivGEv  244 (332)
T PRK13900        230 ACLRLRPDRIIVGEL  244 (332)
T ss_pred             HHHCCCCCEEEECCC
T ss_conf             975689975844555