HHsearch alignment for GI: 254780545 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=96.09 E-value=0.011 Score=38.56 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=48.0
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--CEECCCH---------HHHHHHHH-----HCCHHHHHHHHH
Q ss_conf 6766420123331100378742588899997424699--7020585---------78864442-----033245999999
Q gi|254780545|r 171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV--PFFTISG---------SDFVELFV-----GVGASRVRDMFE 234 (647)
Q Consensus 171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--~f~~~~~---------s~~~~~~~-----g~g~~~vr~lf~ 234 (647)
T Consensus 150 ~~fL~~aV~~r~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v~l~~~~~~~g~~~vt~~~Ll~ 229 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRVHLLASKGGQGRAKVTTQDLIE 229 (332)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEEEEEECCCCCCCCEECHHHHHH
T ss_conf 99999998648719998888988999999998358953535663140663566688889999716888866086999999
Q ss_pred HHHHHCCHHEEHHHH
Q ss_conf 998737801206323
Q gi|254780545|r 235 QAKNNSPCIVFVDEI 249 (647)
Q Consensus 235 ~a~~~~p~iifiDei 249 (647)
T Consensus 230 ~aLR~rPDRIivGEv 244 (332)
T PRK13900 230 ACLRLRPDRIIVGEL 244 (332)
T ss_pred HHHCCCCCEEEECCC
T ss_conf 975689975844555