HHsearch alignment for GI: 254780545 and conserved domain: TIGR00602
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=97.25 E-value=0.00028 Score=49.99 Aligned_cols=58 Identities=24% Similarity=0.431 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 69889852889999999998743356766420123331---100378742588899997424699702
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG---VLLVGPPGTGKTLLARAVAGEANVPFF 210 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g---~ll~GppGtGKTlla~a~a~e~~~~f~ 210 (647)
T Consensus 87 ~~~~lAvH---K~Ki~~v~~wl~a----~~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~~~~ 147 (670)
T TIGR00602 87 TQEELAVH---KKKIEEVEEWLKA----QVLESAKKRGGSILLITGPSGCGKSTTIKILSKELGIKVQ 147 (670)
T ss_pred CHHHHHHH---HHHHHHHHHHHHH----HCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 24577664---7779999999752----0020456677537884175588447899999888644565