HHsearch alignment for GI: 254780545 and conserved domain: TIGR01242
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=627.37 Aligned_cols=253 Identities=47% Similarity=0.775 Sum_probs=246.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf 001124225698898528899999999987-4335676642012333110037874258889999742469970205857
Q gi|254780545|r 137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS 215 (647)
Q Consensus 137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s 215 (647)
T Consensus 111 ~EV~E~P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgS 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred EEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHH
T ss_conf 77621782334026787899999988873468883167762889898657007579768899998631455126886044
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r 216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
T Consensus 191 ElV~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 44444413316899999998530698168610133354321146778731578899999975248887676168872076
Q ss_pred CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10088333165642314100013478899999998548877732110245441203798999999999876455320242
Q gi|254780545|r 296 PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRL 375 (647)
Q Consensus 296 ~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~ 375 (647)
T Consensus 271 ~DilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr~~~la~dVdl~~~A~~TeG~sGAdlKAi~tEAG~~AIR~~r~~ 350 (364)
T TIGR01242 271 PDILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKLTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred CHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 20204321488861325731697832205665552100001235687999987478866304234346204777744567
Q ss_pred CCHHHHHHHHHHCC
Q ss_conf 10456899975013
Q gi|254780545|r 376 VTMQEFEDAKDKIL 389 (647)
Q Consensus 376 i~~~dl~~A~~rv~ 389 (647)
T Consensus 351 vT~~Df~kAv~Kv~ 364 (364)
T TIGR01242 351 VTMDDFLKAVEKVL 364 (364)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 66999999987319