HHsearch alignment for GI: 254780545 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=627.37  Aligned_cols=253  Identities=47%  Similarity=0.775  Sum_probs=246.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf             001124225698898528899999999987-4335676642012333110037874258889999742469970205857
Q gi|254780545|r  137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS  215 (647)
Q Consensus       137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s  215 (647)
T Consensus       111 ~EV~E~P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgS  190 (364)
T TIGR01242       111 MEVEERPNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS  190 (364)
T ss_pred             EEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHH
T ss_conf             77621782334026787899999988873468883167762889898657007579768899998631455126886044


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r  216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
T Consensus       191 ElV~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR  270 (364)
T TIGR01242       191 ELVRKYIGEGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR  270 (364)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             44444413316899999998530698168610133354321146778731578899999975248887676168872076


Q ss_pred             CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10088333165642314100013478899999998548877732110245441203798999999999876455320242
Q gi|254780545|r  296 PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRL  375 (647)
Q Consensus       296 ~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~  375 (647)
T Consensus       271 ~DilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr~~~la~dVdl~~~A~~TeG~sGAdlKAi~tEAG~~AIR~~r~~  350 (364)
T TIGR01242       271 PDILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKLTEGASGADLKAICTEAGMFAIREERDY  350 (364)
T ss_pred             CHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             20204321488861325731697832205665552100001235687999987478866304234346204777744567


Q ss_pred             CCHHHHHHHHHHCC
Q ss_conf             10456899975013
Q gi|254780545|r  376 VTMQEFEDAKDKIL  389 (647)
Q Consensus       376 i~~~dl~~A~~rv~  389 (647)
T Consensus       351 vT~~Df~kAv~Kv~  364 (364)
T TIGR01242       351 VTMDDFLKAVEKVL  364 (364)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             66999999987319