HHsearch alignment for GI: 254780545 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=100.00 E-value=0 Score=483.30 Aligned_cols=372 Identities=37% Similarity=0.575 Sum_probs=286.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf 24225698898528899999999987-43356766420123331100378742588899997424699702058578864
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE 219 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~ 219 (647)
T Consensus 199 ~~P~vtyediG~l~e~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeims 278 (980)
T TIGR01243 199 KVPEVTYEDIGGLKEAVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMS 278 (980)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 17742033203358999999998843575647898618899873587558986178999998753055178850603443
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 44203324599999999873780120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r 220 LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299 (647)
Q Consensus 220 ~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l 299 (647)
T Consensus 279 ky~Ge~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~G--eve-~r~v~qlltlmdGlk~rG~v~viGatnrP~a~ 355 (980)
T TIGR01243 279 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG--EVE-KRVVAQLLTLMDGLKGRGKVIVIGATNRPDAL 355 (980)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 313630789999998653058707874121100764100001--688-99999999997400248728998146885002
Q ss_pred CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------
Q ss_conf 833316564231410001347889999999854887773211--------------------------------------
Q gi|254780545|r 300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVI-------------------------------------- 341 (647)
Q Consensus 300 D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d-------------------------------------- 341 (647)
T Consensus 356 dPalrrPGrfdrei~~~~Pd~~~r~eil~~htr~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (980)
T TIGR01243 356 DPALRRPGRFDREIEIGVPDKEGRKEILQIHTRNMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEKIIEKVSKANSEDEI 435 (980)
T ss_pred CHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62242788644335741885456788887641478750110057899999876665566788999999988631026789
Q ss_pred ----------------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-------------------CCCCCHHH
Q ss_conf ----------------------0245441203798999999999876455320-------------------24210456
Q gi|254780545|r 342 ----------------------LKTIARGTPGFSGADLRNLVNEAALMAARRN-------------------RRLVTMQE 380 (647)
Q Consensus 342 ----------------------~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~-------------------~~~i~~~d 380 (647)
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~l~~la~~thG~~Gadlaal~~eaam~~lrr~~~eg~i~~ea~~iP~~vl~~lkvt~~d 515 (980)
T TIGR01243 436 KEILKEDGNVYVEVRNRLIDKLLDKLAEVTHGFVGADLAALAKEAAMAALRRLIREGKINLEAEEIPKEVLEELKVTMKD 515 (980)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975012124678999999999988654236203559999899999999987402774502677579999873222899
Q ss_pred HHHHHHHCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHH-H
Q ss_conf 899975013686556766---------686677899999999999998505877323432201455564056400244-3
Q gi|254780545|r 381 FEDAKDKILMGAERRSTA---------MTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEAD-R 450 (647)
Q Consensus 381 l~~A~~rv~~G~ek~~~~---------~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d-~ 450 (647)
T Consensus 516 f~ealk~~~P~~~re~~~evP~v~W~diGGlee~kq~lrea----veWPlk~~~~f~k~G~~PP---~Gvll~GPPGtGk 588 (980)
T TIGR01243 516 FKEALKMVEPSALREVLVEVPNVKWEDIGGLEEVKQELREA----VEWPLKAPEVFEKLGIRPP---KGVLLFGPPGTGK 588 (980)
T ss_pred HHHHHHHCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHH----HHCCCCHHHHHHHCCCCCC---CCEEEECCCCCCH
T ss_conf 99998510623411000233751100146678999999877----5234440589986078899---7348746898616
Q ss_pred HC-----------------------CCHHHHHHHH--HHHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHH-HHHHHH
Q ss_conf 22-----------------------6899999999--99987898888861368756-----52335589999-999999
Q gi|254780545|r 451 HS-----------------------TTYVWMTSRL--TILMGGRVAEEFTFGEDNVT-----SGAMSDIEYAT-KLARVM 499 (647)
Q Consensus 451 ~~-----------------------~tk~~l~~~i--~v~LgGRaAEei~fG~~~it-----tGAs~DL~~AT-~iA~~m 499 (647)
T Consensus 589 tllakava~es~anfi~v~GPe~lskWvGese~~ir~if~~arq~aP~~~f~-deidaiaP~rG~~~~~~~vtd~~~nql 667 (980)
T TIGR01243 589 TLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFF-DEIDAIAPARGASLDEKGVTDRIVNQL 667 (980)
T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEE-ECHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 8888877401456467740731223440324799999999864128737873-021110541244210010268999999
Q ss_pred HHHC-CCCCCCCCEEECCCCCCCCC
Q ss_conf 8624-88876673340478767434
Q gi|254780545|r 500 VTQF-GFSNLLGKVSYEEGQQEALL 523 (647)
Q Consensus 500 V~~~-GMs~~lG~i~~~~~~~~~~l 523 (647)
T Consensus 668 l~e~dG~~~~~~vvvi~atnrPdi~ 692 (980)
T TIGR01243 668 LTELDGLEELSDVVVIAATNRPDIL 692 (980)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 9864044343665898615887423