HHsearch alignment for GI: 254780545 and conserved domain: TIGR01818
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=97.82 E-value=4.5e-05 Score=55.69 Aligned_cols=205 Identities=27% Similarity=0.397 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHH----HHHH-
Q ss_conf 8898528899999999987433567664201233311003787425888999974246---9970205857----8864-
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGS----DFVE- 219 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s----~~~~- 219 (647)
T Consensus 135 ~~liG~aPAMQevfR~igRL----------~~~~l~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~ES 204 (471)
T TIGR01818 135 AELIGEAPAMQEVFRAIGRL----------SRSDLSVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIES 204 (471)
T ss_pred CCCCCCCCHHHHHHHHHHHH----------CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHHH
T ss_conf 21236885168999999975----------16960588855757758999998401375557773273023222466554
Q ss_pred -HHHH-----CCHHHHH-HHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCC-C---CC----
Q ss_conf -4420-----3324599-99999987378012063235641445578988626889889989985-303-2---35----
Q gi|254780545|r 220 -LFVG-----VGASRVR-DMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDG-F---ES---- 283 (647)
Q Consensus 220 -~~~g-----~g~~~vr-~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg-~---~~---- 283 (647)
T Consensus 205 ELFGHEkGAFTGA~~~~~GRFEQA---~GGTLFLDEIGDM-------Pl-----~~QT--RLLRVL~~G~f~rVGG~~p~ 267 (471)
T TIGR01818 205 ELFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDM-------PL-----DLQT--RLLRVLADGEFYRVGGRTPI 267 (471)
T ss_pred HHCCCCCCCCCCCCCCCCCCEEEC---CCCCEECCCCCCC-------CH-----HHHH--HHHHHHCCCCEEEECCCEEE
T ss_conf 321456530001025567772534---8882101021678-------77-----6877--79886407865772682024
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHHH----HHHHHHC----CCCCC-CCCCHHHHHH
Q ss_conf 778299996298100883331656423-------141000134788999----9999854----88777-3211024544
Q gi|254780545|r 284 SEGVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGREH----ILMVHSR----NVPLA-PNVILKTIAR 347 (647)
Q Consensus 284 ~~~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~~----i~~~~~~----~~~~~-~~~d~~~la~ 347 (647)
T Consensus 268 k~DVRi~AAThq~--L-e~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhFL~~a~~~l~~~~k~L~~~~~~~ 344 (471)
T TIGR01818 268 KVDVRIVAATHQD--L-EALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAKELDVEPKLLSPEALEA 344 (471)
T ss_pred EEEEEEEECCCHH--H-HHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 5504667336656--8-999655881355555123346216872122668999999999998874286511348899999
Q ss_pred HH-HCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 12-03798--9999999998764553202421045689997
Q gi|254780545|r 348 GT-PGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 348 ~t-~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 345 L~~~~WPGNVR~LEN~cR~---l~~la~~~~v~~~d~~~eL 382 (471)
T TIGR01818 345 LKRYDWPGNVRELENVCRR---LTVLASGDEVLVSDLPAEL 382 (471)
T ss_pred HHHCCCCCCHHHHHHHHHH---HHHHCCCCEEEEEECCHHH
T ss_conf 9725889852457789999---9873467646777757655