HHsearch alignment for GI: 254780545 and conserved domain: TIGR01842

>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.75  E-value=0.023  Score=36.04  Aligned_cols=143  Identities=27%  Similarity=0.486  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------H--HHHHCCCCCC--EEEC
Q ss_conf             5698898528899999999987433567---------------------------------6--6420123331--1003
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQK---------------------------------F--KRLGGRIPHG--VLLV  187 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~---------------------------------~--~~~g~~~p~g--~ll~  187 (647)
T Consensus       283 ~~Wk~~~~Ar~ay~Rl~~ll~~~p~~~~~m~LP~P~G~L~vE~v~~~PP~~~~WsqPivPk~~l~gi~F~~~aGe~laII  362 (556)
T TIGR01842       283 GGWKQFSAARQAYKRLNELLAEYPSRAEAMALPEPEGHLSVENVTIVPPGGKKWSQPIVPKPTLRGISFAIQAGEALAII  362 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCEEEEE
T ss_conf             88888999999999999999857888754578898636888776510786313578977614227862156377458887


Q ss_pred             CCCCHHHHHHHHHHHCCCCCC--EECCCHHHH------------------HHHHHHCC------------------HHH-
Q ss_conf             787425888999974246997--020585788------------------64442033------------------245-
Q gi|254780545|r  188 GPPGTGKTLLARAVAGEANVP--FFTISGSDF------------------VELFVGVG------------------ASR-  228 (647)
Q Consensus       188 GppGtGKTlla~a~a~e~~~~--f~~~~~s~~------------------~~~~~g~g------------------~~~-  228 (647)
T Consensus       363 GPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d~~~iieAAkl  442 (556)
T TIGR01842       363 GPSGSGKSTLARILVGIWPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENADPEKIIEAAKL  442 (556)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             47865258898788721013565336403344023753658801547985050767676402446887887899999976


Q ss_pred             --HHHH--------------------------HHHHHH--HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             --9999--------------------------999987--3780120632356414455789886268898899899853
Q gi|254780545|r  229 --VRDM--------------------------FEQAKN--NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM  278 (647)
Q Consensus       229 --vr~l--------------------------f~~a~~--~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m  278 (647)
T Consensus       443 AGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEPNs-------NL---D~~GE~AL~~Ai~~l  512 (556)
T TIGR01842       443 AGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALYGDPKLVVLDEPNS-------NL---DEEGEQALANAIKAL  512 (556)
T ss_pred             HCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-------CC---CHHHHHHHHHHHHHH
T ss_conf             03035751696885443137777786146899999998717983787328898-------76---617899999999999


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCH
Q ss_conf             03235778299996298100883
Q gi|254780545|r  279 DGFESSEGVILIAATNRPDVLDA  301 (647)
Q Consensus       279 dg~~~~~~v~vi~aTn~~~~lD~  301 (647)
T Consensus       513 ----K~rg~tvv~itHRp~lL~~  531 (556)
T TIGR01842       513 ----KARGITVVVITHRPSLLGL  531 (556)
T ss_pred             ----HHCCCEEEEEECHHHHHHH
T ss_conf             ----8679728998410689999