HHsearch alignment for GI: 254780545 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.75 E-value=0.023 Score=36.04 Aligned_cols=143 Identities=27% Similarity=0.486 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------H--HHHHCCCCCC--EEEC
Q ss_conf 5698898528899999999987433567---------------------------------6--6420123331--1003
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQK---------------------------------F--KRLGGRIPHG--VLLV 187 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~---------------------------------~--~~~g~~~p~g--~ll~ 187 (647)
T Consensus 283 ~~Wk~~~~Ar~ay~Rl~~ll~~~p~~~~~m~LP~P~G~L~vE~v~~~PP~~~~WsqPivPk~~l~gi~F~~~aGe~laII 362 (556)
T TIGR01842 283 GGWKQFSAARQAYKRLNELLAEYPSRAEAMALPEPEGHLSVENVTIVPPGGKKWSQPIVPKPTLRGISFAIQAGEALAII 362 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCEEEEE
T ss_conf 88888999999999999999857888754578898636888776510786313578977614227862156377458887
Q ss_pred CCCCHHHHHHHHHHHCCCCCC--EECCCHHHH------------------HHHHHHCC------------------HHH-
Q ss_conf 787425888999974246997--020585788------------------64442033------------------245-
Q gi|254780545|r 188 GPPGTGKTLLARAVAGEANVP--FFTISGSDF------------------VELFVGVG------------------ASR- 228 (647)
Q Consensus 188 GppGtGKTlla~a~a~e~~~~--f~~~~~s~~------------------~~~~~g~g------------------~~~- 228 (647)
T Consensus 363 GPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d~~~iieAAkl 442 (556)
T TIGR01842 363 GPSGSGKSTLARILVGIWPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENADPEKIIEAAKL 442 (556)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 47865258898788721013565336403344023753658801547985050767676402446887887899999976
Q ss_pred --HHHH--------------------------HHHHHH--HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --9999--------------------------999987--3780120632356414455789886268898899899853
Q gi|254780545|r 229 --VRDM--------------------------FEQAKN--NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM 278 (647)
Q Consensus 229 --vr~l--------------------------f~~a~~--~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m 278 (647)
T Consensus 443 AGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEPNs-------NL---D~~GE~AL~~Ai~~l 512 (556)
T TIGR01842 443 AGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALYGDPKLVVLDEPNS-------NL---DEEGEQALANAIKAL 512 (556)
T ss_pred HCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-------CC---CHHHHHHHHHHHHHH
T ss_conf 03035751696885443137777786146899999998717983787328898-------76---617899999999999
Q ss_pred CCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 03235778299996298100883
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDA 301 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~ 301 (647)
T Consensus 513 ----K~rg~tvv~itHRp~lL~~ 531 (556)
T TIGR01842 513 ----KARGITVVVITHRPSLLGL 531 (556)
T ss_pred ----HHCCCEEEEEECHHHHHHH
T ss_conf ----8679728998410689999