HHsearch alignment for GI: 254780545 and conserved domain: TIGR02329
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=96.40 E-value=0.0034 Score=42.15 Aligned_cols=175 Identities=31% Similarity=0.430 Sum_probs=109.4
Q ss_pred CCCCCCCCCCCCCCCC------C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 8877767663210000------1----12422569889852889999999998743356766420123331100378742
Q gi|254780545|r 123 GARGAMGFGKSKAKLL------S----GNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGT 192 (647)
Q Consensus 123 g~~~~msfGKSkAk~~------~----~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGt 192 (647)
T Consensus 284 adGtvftfqesraverldr~~~~~tr~~lrtR~~~~dl~G~s~~Me~VR~~v------~lY----Ars~atVLi~GE~GT 353 (658)
T TIGR02329 284 ADGTVFTFQESRAVERLDRALRSATRNQLRTRYRLDDLLGESAAMEQVRALV------RLY----ARSAATVLIEGESGT 353 (658)
T ss_pred CCCCEEEEHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCHHHHHHHH------HHH----CCCCCEEEEECCCCC
T ss_conf 3550454022478899988621303554320345476538982138999999------852----688650675147772
Q ss_pred HHHHHHHHHHCC-----------CCCCEECCCHHHHHHHHH-----H--CC----HHH--HHHHHHHHHHHCCHHEEHHH
Q ss_conf 588899997424-----------699702058578864442-----0--33----245--99999999873780120632
Q gi|254780545|r 193 GKTLLARAVAGE-----------ANVPFFTISGSDFVELFV-----G--VG----ASR--VRDMFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 193 GKTlla~a~a~e-----------~~~~f~~~~~s~~~~~~~-----g--~g----~~~--vr~lf~~a~~~~p~iifiDe 248 (647)
T Consensus 354 GKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGAi~EsLLEaELFGYeeGAFTGaRrGG~~GL~E~Ah~---GTLFLDE 430 (658)
T TIGR02329 354 GKELVAQAIHREYALRYDQLSGRRDRPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDE 430 (658)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC---CCEEEHH
T ss_conf 2899999975999874666501337884687474656888877642676665016776776122220057---9510010
Q ss_pred HHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHCC--CCCCC----CEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHH
Q ss_conf 3564144557898862688988-9989985303--23577----829999629810088333165642314100013478
Q gi|254780545|r 249 IDAVGRHRGIGLGGGNDEREQT-LNQLLVEMDG--FESSE----GVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIV 321 (647)
Q Consensus 249 ida~~~~r~~~~~~~~~e~~~~-ln~ll~~mdg--~~~~~----~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~ 321 (647)
T Consensus 431 IGEmP-------LP-----LQtRLLRVLeEreV~RvG~~~P~~VDvRvvaAth~~--L~~~v-~~GrFR~-------DLf 488 (658)
T TIGR02329 431 IGEMP-------LP-----LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCA--LETAV-QQGRFRR-------DLF 488 (658)
T ss_pred HCCCC-------CH-----HHHHHHHHHHCCCEEECCCCCCCEEEEEEEECCCHH--HHHHH-HCCCCCH-------HHH
T ss_conf 03578-------61-----467777765122147617875402444343312222--58798-5788242-------289
Q ss_pred HHHHHHHHHHC
Q ss_conf 89999999854
Q gi|254780545|r 322 GREHILMVHSR 332 (647)
Q Consensus 322 ~r~~i~~~~~~ 332 (647)
T Consensus 489 YRL~~Lri~lP 499 (658)
T TIGR02329 489 YRLSILRIDLP 499 (658)
T ss_pred HHHHHHHHCCC
T ss_conf 99999851478