HHsearch alignment for GI: 254780545 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.52  E-value=2.6e-13  Score=115.27  Aligned_cols=203  Identities=31%  Similarity=0.479  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC------------
Q ss_conf             69889852889999999998743356766420123331100378742588899997424699702058------------
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS------------  213 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~------------  213 (647)
T Consensus        12 ~F~d~~GQ~~iv~tL~NAi~~-----------~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i   79 (363)
T TIGR02397        12 TFEDVIGQEHIVKTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEI   79 (363)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-----------CCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHH
T ss_conf             611023517999999999971-----------8966234502859976355899999986588-7877877775022776


Q ss_pred             ----HHHHHHHHHHCCHHH-----HHHHHHHHHHHCCHH-----EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             ----578864442033245-----999999998737801-----206323564144557898862688988998998530
Q gi|254780545|r  214 ----GSDFVELFVGVGASR-----VRDMFEQAKNNSPCI-----VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD  279 (647)
Q Consensus       214 ----~s~~~~~~~g~g~~~-----vr~lf~~a~~~~p~i-----ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md  279 (647)
T Consensus        80 ~~g~~~DviEi---DAASN~gVD~IR~l~e~v-~y~P~~~kYKvYIIDEVHMLS--------------~~AFNALLKTLE  141 (363)
T TIGR02397        80 NSGSSLDVIEI---DAASNNGVDDIRELRENV-KYAPSKGKYKVYIIDEVHMLS--------------KSAFNALLKTLE  141 (363)
T ss_pred             HCCCCCCEEEE---CCCCCCCHHHHHHHHHHH-CCCCCCCCCCEEEEECCCCCC--------------HHHHHHHHHHHC
T ss_conf             52898666886---486568788999998730-368755443358873230286--------------568999876522


Q ss_pred             CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             3235778299996298100883331-656423141000134788999999985488777321102454412037989999
Q gi|254780545|r  280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR  358 (647)
Q Consensus       280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~  358 (647)
T Consensus       142 --EPP~hV~FIlATTE~~KiP~TIlSRCQrF~Fk-~i~~~~i~~~L~~I-~~~E~I~~e~~-AL~~IA~~a~G-S~RDAl  215 (363)
T TIGR02397       142 --EPPEHVVFILATTEPHKIPATILSRCQRFDFK-RIPLEDIVERLKKI-LDKEGIKIEDE-ALELIARAADG-SMRDAL  215 (363)
T ss_pred             --CCCCCEEEEEECCCHHHCCCCCEEECEEECCC-CCCHHHHHHHHHHH-HHHHCCCCCHH-HHHHHHHHCCC-CCCHHH
T ss_conf             --79876288873487112055402100031267-89989999999999-98708831778-99999996289-610688


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             999998764553202421045689997
Q gi|254780545|r  359 NLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       359 ~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
T Consensus       216 sllDQ~~~~~~~~-DG~i~~~~v~~~l  241 (363)
T TIGR02397       216 SLLDQAISFGNGS-DGKITYEDVNEML  241 (363)
T ss_pred             HHHHHHHHHCCCC-CCCCCHHHHHHHH
T ss_conf             9999999826887-8865789999983