HHsearch alignment for GI: 254780545 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.52 E-value=2.6e-13 Score=115.27 Aligned_cols=203 Identities=31% Similarity=0.479 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC------------
Q ss_conf 69889852889999999998743356766420123331100378742588899997424699702058------------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS------------ 213 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~------------ 213 (647)
T Consensus 12 ~F~d~~GQ~~iv~tL~NAi~~-----------~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i 79 (363)
T TIGR02397 12 TFEDVIGQEHIVKTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEI 79 (363)
T ss_pred CCCCCCCCHHHHHHHHHHHHH-----------CCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHH
T ss_conf 611023517999999999971-----------8966234502859976355899999986588-7877877775022776
Q ss_pred ----HHHHHHHHHHCCHHH-----HHHHHHHHHHHCCHH-----EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ----578864442033245-----999999998737801-----206323564144557898862688988998998530
Q gi|254780545|r 214 ----GSDFVELFVGVGASR-----VRDMFEQAKNNSPCI-----VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279 (647)
Q Consensus 214 ----~s~~~~~~~g~g~~~-----vr~lf~~a~~~~p~i-----ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md 279 (647)
T Consensus 80 ~~g~~~DviEi---DAASN~gVD~IR~l~e~v-~y~P~~~kYKvYIIDEVHMLS--------------~~AFNALLKTLE 141 (363)
T TIGR02397 80 NSGSSLDVIEI---DAASNNGVDDIRELRENV-KYAPSKGKYKVYIIDEVHMLS--------------KSAFNALLKTLE 141 (363)
T ss_pred HCCCCCCEEEE---CCCCCCCHHHHHHHHHHH-CCCCCCCCCCEEEEECCCCCC--------------HHHHHHHHHHHC
T ss_conf 52898666886---486568788999998730-368755443358873230286--------------568999876522
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 3235778299996298100883331-656423141000134788999999985488777321102454412037989999
Q gi|254780545|r 280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR 358 (647)
Q Consensus 280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~ 358 (647)
T Consensus 142 --EPP~hV~FIlATTE~~KiP~TIlSRCQrF~Fk-~i~~~~i~~~L~~I-~~~E~I~~e~~-AL~~IA~~a~G-S~RDAl 215 (363)
T TIGR02397 142 --EPPEHVVFILATTEPHKIPATILSRCQRFDFK-RIPLEDIVERLKKI-LDKEGIKIEDE-ALELIARAADG-SMRDAL 215 (363)
T ss_pred --CCCCCEEEEEECCCHHHCCCCCEEECEEECCC-CCCHHHHHHHHHHH-HHHHCCCCCHH-HHHHHHHHCCC-CCCHHH
T ss_conf --79876288873487112055402100031267-89989999999999-98708831778-99999996289-610688
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999998764553202421045689997
Q gi|254780545|r 359 NLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 359 ~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 216 sllDQ~~~~~~~~-DG~i~~~~v~~~l 241 (363)
T TIGR02397 216 SLLDQAISFGNGS-DGKITYEDVNEML 241 (363)
T ss_pred HHHHHHHHHCCCC-CCCCCHHHHHHHH
T ss_conf 9999999826887-8865789999983